RLG00000001410

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016946
Physical Location & Seq
Forward (+)
15265570 .. 15267791
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001410

Sequence Viewer

Length: 426 bp
ATGGCACCCCTCGTTTGGGTGGGATTGCACCATGCCCAGTGGCGTATGACGTCGAGTTCCCTTCCTCTGAGATTAGGCAGCGCGACCTCTTGGTTGAGGAGGAAGACTATATGTAAGGACGGAGAAAACCCAGGCCATGGTGGTCGCCACCTCACAACTCCTGCAGCCCTGAACCCAACTGATTTCTACCCCATTTTTGTATTTGTTCCATCAAAGGTGGACCTCCCCGGACTGAAGAAGGAAGAAGTGAAGGTTGAGCTAGAGGAAGGGAATGTTCTTCAGAGGAGAGAGAAGCAGGGAGCAAGAGGAGAAGAACGACAAGTGGCACAGGGTAGAGAGGAGCAGCGGCAAGTTCTTGAGGAGGTTCAGGCTGCCAGTACGCCACCGCCTCCGCCCCACCAGAGCCCTGAGTTCACCGTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20 LRR_6

Protein Analysis

142

Amino Acids

15.79

Weight (kDa)

8.85

Isoelectric Point (pI)

61.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 137
AccII CGCG 1 cut(s) 83
AciI CCGC 3 cut(s) 346, 386, 392
AcuI CTGAAG 2 cut(s) 254, 263
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 3 cut(s) 15, 16, 137
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 4 cut(s) 78, 164, 343, 371
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 406
AvaII GGWCC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 4 cut(s) 90, 176, 355, 358
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 5 cut(s) 79, 165, 344, 347, 372
BlsI GCNGC 5 cut(s) 80, 166, 345, 348, 373
Bme1390I CCNGG 2 cut(s) 132, 228
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 132, 228
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 130, 136, 226
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 16, 137
Bse1I ACTGG 2 cut(s) 37, 375
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 130, 136, 226
BseLI CCNNNNNNNGG 3 cut(s) 15, 16, 137
BseMII CTCAG 2 cut(s) 59, 399
BseNI ACTGG 2 cut(s) 37, 375
BseRI GAGGAG 5 cut(s) 112, 298, 321, 353, 374
BseXI GCAGC 4 cut(s) 90, 176, 355, 358
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 3 cut(s) 15, 16, 137
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 407
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 3 cut(s) 346, 386, 392
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 60, 400
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 37, 375
BssECI CCNNGG 3 cut(s) 130, 136, 226
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 418
BstACI GRCGYC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 68, 408
BstDSI CCRYGG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 130, 226
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 4 cut(s) 90, 176, 355, 358
BstV2I GAAGAC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 378
CviAII CATG 2 cut(s) 32, 137
CviJI RGCY 5 cut(s) 135, 167, 259, 371, 405
CviKI_1 RGCY 5 cut(s) 135, 167, 259, 371, 405
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 68, 408
EciI GGCGGA 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 254, 263
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 35, 140
FaiI YATR 5 cut(s) 33, 47, 110, 112, 138
FatI CATG 2 cut(s) 31, 136
Fnu4HI GCNGC 5 cut(s) 79, 165, 344, 347, 372
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 5 cut(s) 79, 165, 344, 347, 372
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 82
GluI GCNGC 5 cut(s) 79, 165, 344, 347, 372
HaeIII GGCC 1 cut(s) 135
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 35, 140
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 2 cut(s) 220, 414
Hpy188I TCNGA 2 cut(s) 69, 282
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 2 cut(s) 220, 414
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 71, 232, 244, 260
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 28, 164
HpyF3I CTNAG 2 cut(s) 68, 408
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 35, 140
HspAI GCGC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 299, 340
Lsp1109I GCAGC 4 cut(s) 90, 176, 355, 358
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 50
MboII GAAGA 5 cut(s) 115, 247, 254, 269, 323
MhlI GDGCHC 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 132, 228
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 83
NciI CCSGG 1 cut(s) 228
NcoI CCATGG 1 cut(s) 136
NlaIII CATG 2 cut(s) 35, 140
NlaIV GGNNCC 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 5 cut(s) 80, 166, 345, 348, 373
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 220
PstI CTGCAG 1 cut(s) 166
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SatI GCNGC 5 cut(s) 79, 165, 344, 347, 372
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 132, 228
SduI GDGCHC 1 cut(s) 407
SetI ASST 8 cut(s) 53, 89, 153, 219, 225, 255, 261, 366
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SsiI CCGC 3 cut(s) 346, 386, 392
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 130, 226
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 53
TauI GCSGC 1 cut(s) 349
TscAI CASTG 1 cut(s) 44
TseI GCWGC 4 cut(s) 78, 164, 343, 371
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 44
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 220
XspI CTAG 1 cut(s) 260
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.