Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019205.1

Orthogroup ID

OG0016946

Physical Location & Seq

Genomic Coordinates Forward (+)

9462 .. 11350

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019205.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgccagaattcacagaatcaaattacagagtaagagaacggagaccggaggttccaggcttttggccgtcgaacatcatcatccggatccacgaccttagctcactgaatgttctcagctgcggcgatgtgacgctttggactcgcttgccagtggttgtcggaattggatggggggacagagaatgtcgtgccggtggtcgccggaatcggatgggggagagagagagtcgtgctggtggtcgccggaatcggaggcggagaccaaagacagaccagaaacgaaatcttgcagcggctatcacgctcgcgttgattacaatcattgcatctgataattggattggtgaggacggagaaaacctaggccacgatggtcaccacctcacaactcctgcagccttgaacccagctgatttctatcccatttttgtatttgttccatcaaaggtggacctccccagatttaagaatgaagaagtgaaggttgagctagaggaagggaatgtccttcatatcaatggagagagaagcagtgagcaagaggagaagaacgacaagtggcacagcgtagagaggagcagtggcaagttcttgaggaggttcaggctgccagtacgtcgtcgtctccacctcaccagagcctcgagttcatcgtcaagtcactgtaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

224

Amino Acids

25.67

Weight (kDa)

10.06

Isoelectric Point (pI)

76.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016946)

Species	Orthologous Gene IDs
malus_domestica	MD07G1210500.v1.1
rosa_laevigata	RLG00000001410 RLG00000001599
rosa_multiflora	Rmu_sc0000882.1_g000040 Rmu_sc0004250.1_g000032 Rmu_sc0006065.1_g000008 Rmu_sc0019205.1_g000001
rosa_samantha	Rh1BG211900 Rh2DG508000 Rh3BG313300 Rh4DG314600 Rh5AG191700 Rh5BG113800 Rh7BG380200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	311
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	3 cut(s)	123, 259, 296
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	618
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	102, 120, 413, 493
AluI	AGCT	4 cut(s)	102, 120, 413, 493
Alw26I	GTCTC	3 cut(s)	37, 256, 632
AlwI	GGATC	2 cut(s)	82, 95
Ama87I	CYCGRG	1 cut(s)	646
Aor13HI	TCCGGA	1 cut(s)	84
AoxI	GGCC	2 cut(s)	65, 367
ApeKI	GCWGC	4 cut(s)	120, 293, 398, 610
ApoI	RAATTY	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	359, 371, 628
AvaI	CYCGRG	1 cut(s)	646
AvaII	GGWCC	1 cut(s)	454
AvrII	CCTAGG	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	107, 305, 410, 597
BccI	CCATC	4 cut(s)	165, 208, 368, 451
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	3 cut(s)	37, 256, 632
BfaI	CTAG	2 cut(s)	365, 494
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	6 cut(s)	121, 124, 294, 297, 399, 611
BlnI	CCTAGG	1 cut(s)	364
BlsI	GCNGC	6 cut(s)	122, 125, 295, 298, 400, 612
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	2 cut(s)	54, 89
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	616
BsaBI	GATNNNNATC	2 cut(s)	320, 420
BsaI	GGTCTC	2 cut(s)	37, 256
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	2 cut(s)	46, 84
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	152, 614
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	2 cut(s)	320, 420
BseAI	TCCGGA	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	3 cut(s)	81, 176, 219
BseJI	GATNNNNATC	2 cut(s)	320, 420
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	152, 614
BseRI	GAGGAG	3 cut(s)	560, 592, 613
BseXI	GCAGC	4 cut(s)	107, 305, 410, 597
BseYI	CCCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	67, 369
BsiHKCI	CYCGRG	1 cut(s)	646
BsiSI	CCGG	5 cut(s)	47, 85, 195, 205, 247
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	3 cut(s)	37, 256, 632
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	67, 369
Bso31I	GGTCTC	2 cut(s)	37, 256
BsoBI	CYCGRG	1 cut(s)	646
Bsp13I	TCCGGA	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	3 cut(s)	123, 259, 296
BspANI	GGCC	2 cut(s)	67, 369
BspCNI	CTCAG	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	54, 89
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	2 cut(s)	82, 95
BspTNI	GGTCTC	2 cut(s)	37, 256
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	152, 614
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	149, 309
BstDEI	CTNAG	2 cut(s)	98, 116
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	81, 176, 219
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	3 cut(s)	37, 256, 632
BstMBI	GATC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	4 cut(s)	107, 305, 410, 597
BstX2I	RGATCY	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	67, 369
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	81, 176, 219
BtsI	GCAGTG	2 cut(s)	541, 589
BtsIMutI	CAGTG	5 cut(s)	104, 159, 541, 589, 664
Cac8I	GCNNGC	2 cut(s)	149, 309
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	617
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	2 cut(s)	98, 116
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	364
Eco31I	GGTCTC	2 cut(s)	37, 256
Eco47I	GGWCC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	646
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	632
FaiI	YATR	1 cut(s)	516
FaqI	GGGAC	1 cut(s)	191
Fnu4HI	GCNGC	6 cut(s)	121, 124, 294, 297, 399, 611
FokI	GGATG	3 cut(s)	68, 183, 226
Fsp4HI	GCNGC	6 cut(s)	121, 124, 294, 297, 399, 611
FspBI	CTAG	2 cut(s)	365, 494
GluI	GCNGC	6 cut(s)	121, 124, 294, 297, 399, 611
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	67, 369
HapII	CCGG	5 cut(s)	47, 85, 195, 205, 247
HgaI	GACGC	1 cut(s)	142
HinfI	GANTC	5 cut(s)	17, 142, 208, 229, 250
HpaII	CCGG	5 cut(s)	47, 85, 195, 205, 247
HphI	GGTGA	3 cut(s)	359, 371, 628
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	4 cut(s)	164, 213, 255, 334
Hpy188III	TCNNGA	2 cut(s)	85, 595
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	3 cut(s)	73, 624, 627
HpyAV	CCTTC	3 cut(s)	478, 494, 521
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	3 cut(s)	293, 329, 398
HpyF3I	CTNAG	2 cut(s)	98, 116
HpySE526I	ACGT	1 cut(s)	619
Kpn2I	TCCGGA	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	579
Lsp1109I	GCAGC	4 cut(s)	107, 305, 410, 597
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	2 cut(s)	365, 494
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	3 cut(s)	130, 377, 662
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	2 cut(s)	488, 562
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	4 cut(s)	8, 22, 165, 337
MlyI	GAGTC	2 cut(s)	136, 238
MmeI	TCCRAC	1 cut(s)	142
MroI	TCCGGA	1 cut(s)	84
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	3 cut(s)	120, 296, 413
MspI	CCGG	5 cut(s)	47, 85, 195, 205, 247
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	311
NdeII	GATC	1 cut(s)	87
NlaIV	GGNNCC	2 cut(s)	54, 89
NmuCI	GTSAC	3 cut(s)	130, 377, 662
PaeR7I	CTCGAG	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	17, 208, 250
PkrI	GCNGC	6 cut(s)	122, 125, 295, 298, 400, 612
PleI	GAGTC	2 cut(s)	136, 237
PpsI	GAGTC	2 cut(s)	136, 237
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	54, 89
PspPI	GGNCC	1 cut(s)	454
PspXI	VCTCGAGB	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	87
PvuII	CAGCTG	2 cut(s)	120, 413
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	6 cut(s)	121, 124, 294, 297, 399, 611
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	2 cut(s)	136, 238
ScrFI	CCNGG	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	338
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	646
SinI	GGWCC	1 cut(s)	454
SlaI	CTCGAG	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	595, 646
SmoI	CTYRAG	2 cut(s)	595, 646
Sse9I	AATT	4 cut(s)	8, 22, 165, 337
SsiI	CCGC	3 cut(s)	123, 259, 296
SspMI	CTAG	2 cut(s)	365, 494
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	2 cut(s)	71, 647
TasI	AATT	4 cut(s)	8, 22, 165, 337
TauI	GCSGC	2 cut(s)	126, 299
TfiI	GAWTC	3 cut(s)	17, 208, 250
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	5 cut(s)	111, 159, 541, 589, 671
TseFI	GTSAC	3 cut(s)	130, 377, 662
TseI	GCWGC	4 cut(s)	120, 293, 398, 610
Tsp45I	GTSAC	3 cut(s)	130, 377, 662
TspDTI	ATGAA	3 cut(s)	489, 503, 642
TspGWI	ACGGA	2 cut(s)	55, 369
TspRI	CASTG	5 cut(s)	111, 159, 541, 589, 671
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	646
XmaJI	CCTAGG	1 cut(s)	364
XspI	CTAG	2 cut(s)	365, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.