Rh2DG508000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016946
Physical Location & Seq
Reverse (-)
73209038 .. 73209369
332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG508000.1

Sequence Viewer

Length: 300 bp
ATGACTAATCTGTGCCAGAATTCACCGAATCAAGTTACAGAGTGGAGACCGGAGGTTCCAGGCTTCTGGTCGTCGAAGGTCATCGTCCGGATCCACAACCTCAGCTCGCTGAAGCTTCTTGACTACGGCTGCGCTACACTTTGGACTCGCAGGCGTTCGACCACGAGTACAACAGACCTCGTTCTCGCCGTTAACCGAAACAACGGATCTCCCGACCTCAATCCGAGCTCAATCCACTGCAACCGCGATCCAAGATCCGAAGGTTTACCTGCTTATGGAGAACCAGATGTTTCGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.0

Weight (kDa)

7.76

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccII CGCG 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 1 cut(s) 244
AclWI GGATC 5 cut(s) 85, 98, 214, 242, 249
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 275
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 105, 115, 228
AluI AGCT 3 cut(s) 105, 115, 228
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 5 cut(s) 85, 98, 214, 242, 249
Aor13HI TCCGGA 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 15
BamHI GGATCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 230
BauI CACGAG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 230
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 142, 173
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 60
BmiI GGNNCC 2 cut(s) 57, 92
BmrFI CCNGG 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 40
BsaWI WCCGGW 2 cut(s) 49, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 275
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 2 cut(s) 50, 88
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 4 cut(s) 90, 206, 247, 254
BspACI CCGC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 87
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 57, 92
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 5 cut(s) 85, 98, 214, 242, 249
BspTNI GGTCTC 1 cut(s) 40
BssMI GATC 4 cut(s) 90, 206, 247, 254
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 107, 152
BstDEI CTNAG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 4 cut(s) 93, 209, 250, 257
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 4 cut(s) 90, 206, 247, 254
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 116
BstX2I RGATCY 3 cut(s) 90, 206, 254
BstXI CCANNNNNNTGG 1 cut(s) 66
BstYI RGATCY 3 cut(s) 90, 206, 254
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 107, 152
CfoI GCGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 168
CviJI RGCY 5 cut(s) 63, 105, 115, 129, 228
CviKI_1 RGCY 5 cut(s) 63, 105, 115, 129, 228
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 101
DpnI GATC 4 cut(s) 92, 208, 249, 256
DpnII GATC 4 cut(s) 90, 206, 247, 254
Ecl136II GAGCTC 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 230
FaiI YATR 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 130
GlaI GCGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 130
HapII CCGG 2 cut(s) 50, 88
HhaI GCGC 1 cut(s) 134
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 2 cut(s) 28, 145
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 2 cut(s) 50, 88
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 2 cut(s) 193, 266
Hpy188I TCNGA 2 cut(s) 225, 259
Hpy188III TCNNGA 3 cut(s) 88, 119, 212
Hpy8I GTNNAC 2 cut(s) 193, 266
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 70, 254
HpyCH4V TGCA 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 101
HspAI GCGC 1 cut(s) 132
Kpn2I TCCGGA 1 cut(s) 87
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 4 cut(s) 90, 206, 247, 254
LpnPI CCDG 8 cut(s) 29, 45, 52, 63, 72, 101, 136, 282
Lsp1109I GCAGC 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 34
MalI GATC 4 cut(s) 92, 208, 249, 256
MboI GATC 4 cut(s) 90, 206, 247, 254
MflI RGATCY 3 cut(s) 90, 206, 254
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 4 cut(s) 46, 110, 188, 227
MroI TCCGGA 1 cut(s) 87
MseI TTAA 1 cut(s) 192
MspI CCGG 2 cut(s) 50, 88
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 246
NdeII GATC 4 cut(s) 90, 206, 247, 254
NlaIV GGNNCC 2 cut(s) 57, 92
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 210
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 57, 92
PsuI RGATCY 3 cut(s) 90, 206, 254
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SacI GAGCTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 4 cut(s) 90, 206, 247, 254
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 230
Sse9I AATT 1 cut(s) 19
SsiI CCGC 1 cut(s) 244
SstI GAGCTC 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 58
TaqI TCGA 2 cut(s) 74, 158
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 242
TseI GCWGC 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 242
XapI RAATTY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.