Rh7BG380200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016946
Physical Location & Seq
Forward (+)
41065295 .. 41067630
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG380200.1

Sequence Viewer

Length: 321 bp
ATGACTGGCAGTGAGAGCAGGGATGGTGATGCTGTTTCCAACACTGTGAGAGCAACGTTGGTCGTCGTGCGTATTGCGGCAGTGGCAGAAGTTGAAAAGGTCAGAGACAAAAATACTCGCCGAGATCGGAGGTTTCAGGAGTTAAACATCATCGTTCGGATCCACGACCTCAGCTTGCTGAGGCTTCTCGGCTGCGGGGGCGCTATGCTTTGGACTCGCTCGCGTTCAATTGTGCTTGCCTTGGAGGATGGAACCGTGGAGGGAGGGAGTTGGAGGGAGTCGTCGAGGAGCCTGAGACGGAGATGTGGTCGATGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

11.13

Isoelectric Point (pI)

70.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 223
AciI CCGC 2 cut(s) 77, 195
AclI AACGTT 1 cut(s) 56
AclWI GGATC 2 cut(s) 154, 167
AgsI TTSAA 2 cut(s) 95, 228
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 99, 289
AlwI GGATC 2 cut(s) 154, 167
ApeKI GCWGC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 38
BamHI GGATCC 1 cut(s) 159
BbvCI CCTCAGC 2 cut(s) 170, 179
BbvI GCAGC 1 cut(s) 179
BccI CCATC 3 cut(s) 17, 242, 306
BcoDI GTCTC 2 cut(s) 99, 289
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 2 cut(s) 78, 193
BlsI GCNGC 2 cut(s) 79, 194
BmiI GGNNCC 3 cut(s) 161, 253, 290
BmsI GCATC 1 cut(s) 19
Bpu10I CCTNAGC 2 cut(s) 170, 179
BsaJI CCNNGG 2 cut(s) 240, 255
BsaXI ACNNNNNCTCC 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 10
BseDI CCNNGG 2 cut(s) 240, 255
BseGI GGATG 2 cut(s) 28, 253
BseMII CTCAG 3 cut(s) 170, 184, 284
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 223
BsmAI GTCTC 2 cut(s) 99, 289
BsmBI CGTCTC 1 cut(s) 289
Bsp143I GATC 2 cut(s) 124, 159
BspACI CCGC 2 cut(s) 77, 195
BspCNI CTCAG 3 cut(s) 171, 183, 285
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 161, 253, 290
BspPI GGATC 2 cut(s) 154, 167
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 240, 255
BssMI GATC 2 cut(s) 124, 159
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 46, 256
BstC8I GCNNGC 3 cut(s) 176, 221, 237
BstDEI CTNAG 3 cut(s) 170, 179, 293
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 2 cut(s) 28, 253
BstFNI CGCG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 127, 162
BstMAI GTCTC 2 cut(s) 99, 289
BstMBI GATC 2 cut(s) 124, 159
BstMWI GCNNNNNNNGC 3 cut(s) 15, 83, 198
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 28, 253
BtsI GCAGTG 2 cut(s) 16, 87
BtsIMutI CAGTG 3 cut(s) 16, 42, 87
Cac8I GCNNGC 3 cut(s) 176, 221, 237
CfoI GCGC 1 cut(s) 203
CviJI RGCY 4 cut(s) 174, 184, 192, 291
CviKI_1 RGCY 4 cut(s) 174, 184, 192, 291
DdeI CTNAG 3 cut(s) 170, 179, 293
DpnI GATC 2 cut(s) 126, 161
DpnII GATC 2 cut(s) 124, 159
Eco130I CCWWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 289
FaiI YATR 1 cut(s) 206
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 78, 193
FokI GGATG 2 cut(s) 35, 260
Fsp4HI GCNGC 2 cut(s) 78, 193
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 78, 193
HaeII RGCGCY 1 cut(s) 204
HhaI GCGC 1 cut(s) 203
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 2 cut(s) 214, 278
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 3 cut(s) 104, 129, 159
Hpy188III TCNNGA 1 cut(s) 137
Hpy99I CGWCG 2 cut(s) 68, 286
HpyCH4III ACNGT 2 cut(s) 46, 256
HpyCH4IV ACGT 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 83, 198
HpyF3I CTNAG 3 cut(s) 170, 179, 293
HpySE526I ACGT 1 cut(s) 56
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 124, 159
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 3 cut(s) 4, 122, 305
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 19
MaeII ACGT 1 cut(s) 56
MalI GATC 2 cut(s) 126, 161
MboI GATC 2 cut(s) 124, 159
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 159
MluCI AATT 2 cut(s) 228, 316
MlyI GAGTC 2 cut(s) 208, 287
MmeI TCCRAC 2 cut(s) 63, 251
MnlI CCTC 8 cut(s) 123, 174, 179, 238, 253, 257, 267, 279
MseI TTAA 1 cut(s) 143
MunI CAATTG 1 cut(s) 228
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 15, 83, 198
NdeII GATC 2 cut(s) 124, 159
NlaIV GGNNCC 3 cut(s) 161, 253, 290
NmeAIII GCCGAG 2 cut(s) 146, 168
PkrI GCNGC 2 cut(s) 79, 194
PleI GAGTC 2 cut(s) 208, 286
PpsI GAGTC 2 cut(s) 208, 286
Psp1406I AACGTT 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 161, 253, 290
PsuI RGATCY 1 cut(s) 159
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 78, 193
Sau3AI GATC 2 cut(s) 124, 159
SchI GAGTC 2 cut(s) 208, 287
SetI ASST 5 cut(s) 59, 102, 134, 171, 176
SfaNI GCATC 1 cut(s) 19
Sse9I AATT 2 cut(s) 228, 316
SsiI CCGC 2 cut(s) 77, 195
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 46, 256
TaiI ACGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 284, 310
TasI AATT 2 cut(s) 228, 316
TauI GCSGC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 3 cut(s) 16, 49, 87
TseI GCWGC 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 3 cut(s) 16, 49, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.