Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004334

Physical Location & Seq

Genomic Coordinates Reverse (-)

29760490 .. 29761490

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1220000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGTCATGGTGCCTTCTTTTTCTTTTTGAGCTTACCCTGATGAAGACGATGATGCCTGGTTTCTCACTCGAGGCCCCGCCAAATTTAAGGACAACACTTCCTGACAGACCACTTTCAGCCACTAGAGGTAGGCCTGGAGCACCCAGTTCTCGATCATCTTCCGTTGAGCCTGGTCCTAATGTAAGACCAAGACGGCAATCATGCTCTCCTTCAAGAGGACGGGCTCCCAATGGCATTAGTCATGCTAGTGGGAGCTCCGTTCCTGCATTCAGTCGTGGACATTCTAAAGTTAATGACAATGTGAGCCCTGTTTTAATGGGAACAAAAATGGTCGAGAGGGTAATAAATATGCGCAAACTGGCACCACCGAAGCAAGAGGACAAACATTCTCCTCATGGTAACCACTCCGGGAAGTCAGCTTCATCCCCAGACAGCTCAGGCTTTGGTAGATCACTTTCAAAGAAATCCCTTGATATGGCTATACGCCACATGGATATAAGGCGATCCATTCCAGGTAATTTAAGACCGTTGATGACAAATATTCCTGCATCCTCCATGTATAGTGTGAGATCGGGGCCTGCACGAAGCAGAACAATTAGTGTTTCAGATTCTCCTCTTGCCACTAGCAGTAATGCTAGCTCCGAAGTTAGCGTAAACAACAATGGCCTTTGTTTAGACGGGAGTGAAGTAGAAGATAATGGCAGTGAGAGAGGTGGTCGATCTCCTGCCAGTGTGCGCGGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

26.54

Weight (kDa)

11.1

Isoelectric Point (pI)

73.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40070 AT2G40070 AT2G40070
fragaria_vesca	FvH4_7g24310 FvH4_7g24310 FvH4_7g24320 FvH4_7g24320
malus_domestica	MD01G1132400.v1.1 MD07G1220000.v1.1 MD07G1220200.v1.1
prunus_persica	Prupe.2G248600_v2.0.a1 Prupe.2G248600_v2.0.a1
pyrus_communis	pycom01g16900 pycom07g19910
rosa_chinensis	RchiOBHm_Chr1g0369941 RchiOBHm_Chr1g0369981
rosa_laevigata	RLG00000027081 RLG00000027086
rosa_multiflora	Rmu_co8421201.1_g000001 Rmu_co8476543.1_g000001 Rmu_sc0008140.1_g000014 Rmu_sc0008140.1_g000020
rosa_roxburghii	Rroxscaffold_4G00286910 Rroxscaffold_4G00287130
rosa_rugosa	Rorug01G0352900
rosa_samantha	Rh1AG361700 Rh1AG361800 Rh1BG325000 Rh1CG338200 Rh1CG338300 Rh1DG355400
rosa_wichuraiana	Rw1G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	356
AccB1I	GGYRCC	2 cut(s)	12, 364
AccII	CGCG	1 cut(s)	741
AciI	CCGC	2 cut(s)	80, 741
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	218, 478
AgsI	TTSAA	2 cut(s)	216, 462
AjnI	CCWGG	4 cut(s)	58, 136, 172, 514
AluBI	AGCT	5 cut(s)	34, 258, 422, 438, 642
AluI	AGCT	5 cut(s)	34, 258, 422, 438, 642
Alw21I	GWGCWC	2 cut(s)	145, 260
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	4 cut(s)	75, 134, 578, 667
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	357, 741
AspS9I	GGNCC	3 cut(s)	76, 176, 578
AsuC2I	CCSGG	1 cut(s)	412
AsuNHI	GCTAGC	1 cut(s)	638
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	176
BanI	GGYRCC	2 cut(s)	12, 364
BanII	GRGCYC	3 cut(s)	229, 260, 311
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	145, 260
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	4 cut(s)	60, 138, 174, 516
BcnI	CCSGG	1 cut(s)	412
BfaI	CTAG	4 cut(s)	126, 249, 627, 639
Bme1390I	CCNGG	5 cut(s)	60, 138, 174, 412, 516
Bme18I	GGWCC	1 cut(s)	176
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	76, 176, 578
BmiI	GGNNCC	5 cut(s)	14, 78, 228, 366, 579
BmrFI	CCNGG	5 cut(s)	60, 138, 174, 412, 516
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	45, 560
BmtI	GCTAGC	1 cut(s)	642
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 478
Bse1I	ACTGG	3 cut(s)	147, 366, 732
BseBI	CCWGG	4 cut(s)	60, 138, 174, 516
BseGI	GGATG	2 cut(s)	425, 551
BseLI	CCNNNNNNNGG	2 cut(s)	218, 478
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	147, 366, 732
BseRI	GAGGAG	2 cut(s)	384, 606
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	4 cut(s)	77, 136, 580, 669
BshNI	GGYRCC	2 cut(s)	12, 364
BsiHKAI	GWGCWC	2 cut(s)	145, 260
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	218, 478
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	4 cut(s)	77, 136, 580, 669
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	4 cut(s)	145, 229, 260, 311
Bsp143I	GATC	5 cut(s)	155, 452, 506, 572, 722
BspACI	CCGC	2 cut(s)	80, 741
BspANI	GGCC	4 cut(s)	77, 136, 580, 669
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	5 cut(s)	14, 78, 228, 366, 579
BspOI	GCTAGC	1 cut(s)	642
BspPI	GGATC	1 cut(s)	501
BspT107I	GGYRCC	2 cut(s)	12, 364
BsrI	ACTGG	3 cut(s)	147, 366, 732
BssMI	GATC	5 cut(s)	155, 452, 506, 572, 722
Bst2UI	CCWGG	4 cut(s)	60, 138, 174, 516
Bst4CI	ACNGT	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	582, 640
BstDEI	CTNAG	1 cut(s)	439
BstEII	GGTNACC	1 cut(s)	401
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	425, 551
BstFNI	CGCG	1 cut(s)	741
BstHHI	GCGC	2 cut(s)	357, 741
BstKTI	GATC	5 cut(s)	158, 455, 509, 575, 725
BstMBI	GATC	5 cut(s)	155, 452, 506, 572, 722
BstNI	CCWGG	4 cut(s)	60, 138, 174, 516
BstPI	GGTNACC	1 cut(s)	401
BstSCI	CCNGG	5 cut(s)	58, 136, 172, 410, 514
BstUI	CGCG	1 cut(s)	741
BstV2I	GAAGAC	1 cut(s)	53
BsuRI	GGCC	4 cut(s)	77, 136, 580, 669
BtsCI	GGATG	2 cut(s)	425, 551
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	2 cut(s)	712, 739
Cac8I	GCNNGC	2 cut(s)	582, 640
CfoI	GCGC	2 cut(s)	357, 741
Cfr13I	GGNCC	3 cut(s)	76, 176, 578
CviAII	CATG	6 cut(s)	9, 204, 245, 398, 493, 559
DdeI	CTNAG	1 cut(s)	439
DpnI	GATC	5 cut(s)	157, 454, 508, 574, 724
DpnII	GATC	5 cut(s)	155, 452, 506, 572, 722
Ecl136II	GAGCTC	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	136
Eco24I	GRGCYC	3 cut(s)	229, 260, 311
Eco47I	GGWCC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	258
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoO109I	RGGNCCY	2 cut(s)	76, 578
EcoO65I	GGTNACC	1 cut(s)	401
EcoRII	CCWGG	4 cut(s)	58, 136, 172, 514
EcoT38I	GRGCYC	3 cut(s)	229, 260, 311
FaeI	CATG	6 cut(s)	12, 207, 248, 401, 496, 562
FatI	CATG	6 cut(s)	8, 203, 244, 397, 492, 558
FauI	CCCGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	412, 538
FriOI	GRGCYC	3 cut(s)	229, 260, 311
FspBI	CTAG	4 cut(s)	126, 249, 627, 639
FspI	TGCGCA	1 cut(s)	356
GlaI	GCGC	2 cut(s)	356, 740
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	77, 136, 580, 669
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	2 cut(s)	357, 741
Hin1II	CATG	6 cut(s)	12, 207, 248, 401, 496, 562
Hin6I	GCGC	2 cut(s)	355, 739
HinP1I	GCGC	2 cut(s)	355, 739
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	1 cut(s)	411
Hpy166II	GTNNAC	2 cut(s)	281, 658
Hpy188I	TCNGA	2 cut(s)	610, 646
Hpy188III	TCNNGA	4 cut(s)	104, 153, 216, 337
Hpy8I	GTNNAC	2 cut(s)	281, 658
HpyAV	CCTTC	2 cut(s)	26, 222
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	269, 551, 584
HpyF3I	CTNAG	1 cut(s)	439
Hsp92II	CATG	6 cut(s)	12, 207, 248, 401, 496, 562
HspAI	GCGC	2 cut(s)	355, 739
Kzo9I	GATC	5 cut(s)	155, 452, 506, 572, 722
LmnI	GCTCC	5 cut(s)	140, 232, 255, 263, 647
LweI	GCATC	2 cut(s)	45, 560
MaeI	CTAG	4 cut(s)	126, 249, 627, 639
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	5 cut(s)	157, 454, 508, 574, 724
MboI	GATC	5 cut(s)	155, 452, 506, 572, 722
MboII	GAAGA	3 cut(s)	58, 153, 707
MhlI	GDGCHC	4 cut(s)	145, 229, 260, 311
MluCI	AATT	3 cut(s)	85, 520, 597
MnlI	CCTC	9 cut(s)	67, 122, 212, 333, 373, 405, 565, 627, 707
MseI	TTAA	4 cut(s)	89, 294, 317, 524
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	5 cut(s)	60, 138, 174, 412, 516
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	4 cut(s)	60, 138, 174, 516
MvnI	CGCG	1 cut(s)	741
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	5 cut(s)	155, 452, 506, 572, 722
NheI	GCTAGC	1 cut(s)	638
NlaIII	CATG	6 cut(s)	12, 207, 248, 401, 496, 562
NlaIV	GGNNCC	5 cut(s)	14, 78, 228, 366, 579
NsbI	TGCGCA	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	136
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	611
PfoI	TCCNGGA	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	260
Psp6I	CCWGG	4 cut(s)	58, 136, 172, 514
PspEI	GGTNACC	1 cut(s)	401
PspGI	CCWGG	4 cut(s)	58, 136, 172, 514
PspN4I	GGNNCC	5 cut(s)	14, 78, 228, 366, 579
PspPI	GGNCC	3 cut(s)	76, 176, 578
PspXI	VCTCGAGB	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	260
SaqAI	TTAA	4 cut(s)	89, 294, 317, 524
Sau3AI	GATC	5 cut(s)	155, 452, 506, 572, 722
Sau96I	GGNCC	3 cut(s)	76, 176, 578
ScrFI	CCNGG	5 cut(s)	60, 138, 174, 412, 516
SduI	GDGCHC	4 cut(s)	145, 229, 260, 311
SetI	ASST	9 cut(s)	36, 133, 260, 424, 440, 520, 644, 718, 749
SfaNI	GCATC	2 cut(s)	45, 560
Sfr274I	CTCGAG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	3 cut(s)	85, 520, 597
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	80, 741
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	4 cut(s)	126, 249, 627, 639
SstI	GAGCTC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	5 cut(s)	58, 136, 172, 410, 514
TaaI	ACNGT	1 cut(s)	531
TaqI	TCGA	4 cut(s)	72, 154, 336, 721
TasI	AATT	3 cut(s)	85, 520, 597
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	4 cut(s)	89, 294, 317, 524
Tru9I	TTAA	4 cut(s)	89, 294, 317, 524
TscAI	CASTG	2 cut(s)	712, 739
TspDTI	ATGAA	2 cut(s)	59, 414
TspGWI	ACGGA	2 cut(s)	154, 250
TspRI	CASTG	2 cut(s)	712, 739
VpaK11BI	GGWCC	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	4 cut(s)	126, 249, 627, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.