Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421201.1

Orthogroup ID

OG0004334

Physical Location & Seq

Genomic Coordinates Reverse (-)

903 .. 1403

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421201.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ctggcgccccccaagcacgatgacaaacaatctcctcatgggaaccactctgggaagtcatcgtcatccccggacagttcaggctttggtagatcactatcaaagaaatcccttgatatggctatacgtcacatggatataaggcgaagcattcctggtaatttgcggccgttgatgacaaatattcctgcatcctctatgtacagtgtgagatcagggcctgcacgaagcagaacggttagtgtttcagattctcctcttgccaccagcagtaatgctagctctgaagtcagtgtaaacaacaatggcctttgtttagatgtgagtggagtagaagatgatattggcagtgagagaggtggtcgatctcctgccagtgtgcatggtaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.6

Weight (kDa)

9.73

Isoelectric Point (pI)

81.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40070 AT2G40070 AT2G40070
fragaria_vesca	FvH4_7g24310 FvH4_7g24310 FvH4_7g24320 FvH4_7g24320
malus_domestica	MD01G1132400.v1.1 MD07G1220000.v1.1 MD07G1220200.v1.1
prunus_persica	Prupe.2G248600_v2.0.a1 Prupe.2G248600_v2.0.a1
pyrus_communis	pycom01g16900 pycom07g19910
rosa_chinensis	RchiOBHm_Chr1g0369941 RchiOBHm_Chr1g0369981
rosa_laevigata	RLG00000027081 RLG00000027086
rosa_multiflora	Rmu_co8421201.1_g000001 Rmu_co8476543.1_g000001 Rmu_sc0008140.1_g000014 Rmu_sc0008140.1_g000020
rosa_roxburghii	Rroxscaffold_4G00286910 Rroxscaffold_4G00287130
rosa_rugosa	Rorug01G0352900
rosa_samantha	Rh1AG361700 Rh1AG361800 Rh1BG325000 Rh1CG338200 Rh1CG338300 Rh1DG355400
rosa_wichuraiana	Rw1G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	1 cut(s)	282
AluI	AGCT	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	3 cut(s)	167, 218, 307
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	71
AsuNHI	GCTAGC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	71
BfaI	CTAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	71, 156
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	6, 44
BmrFI	CCNGG	2 cut(s)	71, 156
BmsI	GCATC	1 cut(s)	200
BmtI	GCTAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	65, 191
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	2 cut(s)	24, 246
BseX3I	CGGCCG	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	3 cut(s)	169, 220, 309
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	169, 220, 309
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	92, 212, 365
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	3 cut(s)	169, 220, 309
BspLI	GGNNCC	2 cut(s)	6, 44
BspOI	GCTAGC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	92, 212, 365
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	77, 206, 238
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	222, 280
BstF5I	GGATG	2 cut(s)	65, 191
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	95, 215, 368
BstMBI	GATC	3 cut(s)	92, 212, 365
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	69, 154
BstZI	CGGCCG	1 cut(s)	167
BsuRI	GGCC	3 cut(s)	169, 220, 309
BtsCI	GGATG	2 cut(s)	65, 191
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	4 cut(s)	211, 298, 355, 382
Cac8I	GCNNGC	2 cut(s)	222, 280
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	38, 133, 383
CviJI	RGCY	6 cut(s)	84, 122, 169, 220, 282, 309
CviKI_1	RGCY	6 cut(s)	84, 122, 169, 220, 282, 309
CviQI	GTAC	1 cut(s)	202
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	94, 214, 367
DpnII	GATC	3 cut(s)	92, 212, 365
EaeI	YGGCCR	1 cut(s)	167
EagI	CGGCCG	1 cut(s)	167
EclXI	CGGCCG	1 cut(s)	167
Eco52I	CGGCCG	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	154
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	3 cut(s)	41, 136, 386
FaiI	YATR	7 cut(s)	39, 119, 125, 134, 140, 200, 384
FatI	CATG	3 cut(s)	37, 132, 382
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	52, 178
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	169, 220, 309
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	41, 136, 386
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	250, 286
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4III	ACNGT	3 cut(s)	77, 206, 238
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	3 cut(s)	191, 224, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	127
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	41, 136, 386
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	92, 212, 365
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	3 cut(s)	94, 214, 367
MboI	GATC	3 cut(s)	92, 212, 365
MboII	GAAGA	1 cut(s)	347
MluCI	AATT	1 cut(s)	160
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	4 cut(s)	45, 205, 267, 350
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	71, 156
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	13
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	3 cut(s)	92, 212, 365
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	41, 136, 386
NlaIV	GGNNCC	2 cut(s)	6, 44
NmuCI	GTSAC	1 cut(s)	128
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	168
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	6, 44
PspPI	GGNCC	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	3 cut(s)	92, 212, 365
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	71, 156
SetI	ASST	4 cut(s)	130, 284, 361, 392
SfaNI	GCATC	1 cut(s)	200
SfoI	GGCGCC	1 cut(s)	6
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	166
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	69, 154
TaaI	ACNGT	3 cut(s)	77, 206, 238
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	364
TasI	AATT	1 cut(s)	160
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	251
TscAI	CASTG	4 cut(s)	211, 298, 355, 382
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspRI	CASTG	4 cut(s)	211, 298, 355, 382
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.