Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004334

Physical Location & Seq

Genomic Coordinates Reverse (-)

59664920 .. 59666706

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAATCGGAGTTTTAGGGCTCAGGAGTCGCAAATGCAGGCGATGATGAAGCAGAGGCAGCAGCTCAGGGCCTCAATGAGGAAGGAGAAGGAAGAAGAGCTGGCTTTGTTTCTAGAGATGAAGAAGAGGGAGAAGGAAAGGAACGATCTTCTTCTCAATAGTTCTGAAGAGTTCGATGCGCCATTAGGGGCTAAACCCGGAACTTCTCCCATTTTTAATATATCCTCATCAACGCCGGCGCCTGCACGCAAGACTGGAGCTGATGATTTTCTCAATTCTGAGAATGATAAGAATGACTATGATTGTTGTGCTCGAGATTCAATTATTGTTGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.78

Weight (kDa)

6.33

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40070 AT2G40070 AT2G40070
fragaria_vesca	FvH4_7g24310 FvH4_7g24310 FvH4_7g24320 FvH4_7g24320
malus_domestica	MD01G1132400.v1.1 MD07G1220000.v1.1 MD07G1220200.v1.1
prunus_persica	Prupe.2G248600_v2.0.a1 Prupe.2G248600_v2.0.a1
pyrus_communis	pycom01g16900 pycom07g19910
rosa_chinensis	RchiOBHm_Chr1g0369941 RchiOBHm_Chr1g0369981
rosa_laevigata	RLG00000027081 RLG00000027086
rosa_multiflora	Rmu_co8421201.1_g000001 Rmu_co8476543.1_g000001 Rmu_sc0008140.1_g000014 Rmu_sc0008140.1_g000020
rosa_roxburghii	Rroxscaffold_4G00286910 Rroxscaffold_4G00287130
rosa_rugosa	Rorug01G0352900
rosa_samantha	Rh1AG361700 Rh1AG361800 Rh1BG325000 Rh1CG338200 Rh1CG338300 Rh1DG355400
rosa_wichuraiana	Rw1G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	321
AluBI	AGCT	3 cut(s)	64, 100, 260
AluI	AGCT	3 cut(s)	64, 100, 260
Alw21I	GWGCWC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	58, 61
AspLEI	GCGC	2 cut(s)	181, 241
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	70, 73
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	2 cut(s)	59, 62
BlsI	GCNGC	2 cut(s)	60, 63
Bme1390I	CCNGG	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	2 cut(s)	21, 65
BpuMI	CCSGG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	3 cut(s)	35, 79, 270
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	70, 73
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	2 cut(s)	198, 236
BslI	CCNNNNNNNGG	1 cut(s)	78
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	2 cut(s)	22, 313
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	3 cut(s)	34, 78, 271
BspLI	GGNNCC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	235
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	239
Bst6I	CTCTTC	3 cut(s)	90, 119, 162
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	5 cut(s)	39, 102, 237, 243, 247
BstDEI	CTNAG	4 cut(s)	21, 65, 279, 333
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	181, 241
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	70, 73
BsuRI	GGCC	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	56
Cac8I	GCNNGC	5 cut(s)	39, 102, 237, 243, 247
CfoI	GCGC	2 cut(s)	181, 241
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	69
CviJI	RGCY	7 cut(s)	20, 64, 71, 100, 104, 191, 260
CviKI_1	RGCY	7 cut(s)	20, 64, 71, 100, 104, 191, 260
DdeI	CTNAG	4 cut(s)	21, 65, 279, 333
DinI	GGCGCC	1 cut(s)	240
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	3 cut(s)	90, 119, 162
EarI	CTCTTC	3 cut(s)	90, 119, 162
Eco24I	GRGCYC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	22
EgeI	GGCGCC	1 cut(s)	240
EheI	GGCGCC	1 cut(s)	240
FaiI	YATR	2 cut(s)	221, 300
Fnu4HI	GCNGC	2 cut(s)	59, 62
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	59, 62
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	2 cut(s)	180, 240
GluI	GCNGC	2 cut(s)	59, 62
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	2 cut(s)	198, 236
HhaI	GCGC	2 cut(s)	181, 241
Hin1I	GRCGYC	1 cut(s)	239
Hin6I	GCGC	2 cut(s)	179, 239
HinP1I	GCGC	2 cut(s)	179, 239
HinfI	GANTC	3 cut(s)	4, 26, 317
HpaII	CCGG	2 cut(s)	198, 236
Hpy188I	TCNGA	3 cut(s)	9, 166, 280
Hpy188III	TCNNGA	3 cut(s)	23, 113, 314
HpyAV	CCTTC	3 cut(s)	76, 82, 127
HpyCH4V	TGCA	2 cut(s)	37, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	4 cut(s)	21, 65, 279, 333
Hsp92I	GRCGYC	1 cut(s)	239
HspAI	GCGC	2 cut(s)	179, 239
KasI	GGCGCC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	8 cut(s)	8, 23, 52, 86, 211, 240, 249, 255
Lsp1109I	GCAGC	2 cut(s)	70, 73
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	113
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	7 cut(s)	104, 107, 133, 136, 140, 143, 179
MhlI	GDGCHC	2 cut(s)	22, 313
MluCI	AATT	2 cut(s)	274, 321
Mly113I	GGCGCC	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	5 cut(s)	48, 72, 82, 120, 235
MreI	CGCCGGCG	1 cut(s)	235
MroNI	GCCGGC	1 cut(s)	235
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	198, 236
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	237
NarI	GGCGCC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	145
NgoMIV	GCCGGC	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	4, 317
PkrI	GCNGC	2 cut(s)	60, 63
PleI	GAGTC	1 cut(s)	34
PluTI	GGCGCC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	59, 62
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	22, 313
SetI	ASST	3 cut(s)	66, 102, 262
SfaNI	GCATC	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	312
SgrAI	CRCCGGYG	1 cut(s)	235
SlaI	CTCGAG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	2 cut(s)	274, 321
SspDI	GGCGCC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	196
TaqI	TCGA	2 cut(s)	174, 313
TasI	AATT	2 cut(s)	274, 321
TfiI	GAWTC	2 cut(s)	4, 317
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	2 cut(s)	58, 61
TspDTI	ATGAA	3 cut(s)	17, 62, 134
XagI	CCTNNNNNAGG	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	312
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.