Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008140.1

Orthogroup ID

OG0004334

Physical Location & Seq

Genomic Coordinates Reverse (-)

52582 .. 53040

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008140.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggttgagcgggtaataaatatgcggaaactggcgccccccaagcacgatgacaaacaatctcctcatgggaaccactctgggaagtcatcgtcatccccagacagttcaggctttggtagatcactctcaaagaaatcccttgatatggctatacgtcacatggatataaggcgaagcattcctggtaatttgcggccgttgatgacaaatattcctgcatcctctatggacagtgtgagattagggcctgcacgaagcagaacggttagtgtttcagattctcctcttgccaccaacagtaatgatagctctgaagtcagtgtaaacaacaatggcctttgtaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.48

Weight (kDa)

10.26

Isoelectric Point (pI)

69.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40070 AT2G40070 AT2G40070
fragaria_vesca	FvH4_7g24310 FvH4_7g24310 FvH4_7g24320 FvH4_7g24320
malus_domestica	MD01G1132400.v1.1 MD07G1220000.v1.1 MD07G1220200.v1.1
prunus_persica	Prupe.2G248600_v2.0.a1 Prupe.2G248600_v2.0.a1
pyrus_communis	pycom01g16900 pycom07g19910
rosa_chinensis	RchiOBHm_Chr1g0369941 RchiOBHm_Chr1g0369981
rosa_laevigata	RLG00000027081 RLG00000027086
rosa_multiflora	Rmu_co8421201.1_g000001 Rmu_co8476543.1_g000001 Rmu_sc0008140.1_g000014 Rmu_sc0008140.1_g000020
rosa_roxburghii	Rroxscaffold_4G00286910 Rroxscaffold_4G00287130
rosa_rugosa	Rorug01G0352900
rosa_samantha	Rh1AG361700 Rh1AG361800 Rh1BG325000 Rh1CG338200 Rh1CG338300 Rh1DG355400
rosa_wichuraiana	Rw1G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	10
AciI	CCGC	3 cut(s)	10, 25, 196
AcoI	YGGCCR	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
AoxI	GGCC	3 cut(s)	197, 248, 337
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	36, 74
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	95, 221
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	54, 276
BseX3I	CGGCCG	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	3 cut(s)	199, 250, 339
BshNI	GGYRCC	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	199, 250, 339
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	3 cut(s)	10, 25, 196
BspANI	GGCC	3 cut(s)	199, 250, 339
BspLI	GGNNCC	2 cut(s)	36, 74
BspT107I	GGYRCC	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	122
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	4 cut(s)	107, 236, 268, 302
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	95, 221
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstZI	CGGCCG	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	199, 250, 339
BtsCI	GGATG	2 cut(s)	95, 221
BtsIMutI	CAGTG	2 cut(s)	241, 328
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	248
CviAII	CATG	2 cut(s)	68, 163
CviJI	RGCY	6 cut(s)	114, 152, 199, 250, 312, 339
CviKI_1	RGCY	6 cut(s)	114, 152, 199, 250, 312, 339
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	197
EagI	CGGCCG	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	197
Eco52I	CGGCCG	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	184
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
FaeI	CATG	2 cut(s)	71, 166
FaiI	YATR	7 cut(s)	23, 69, 149, 155, 164, 170, 230
FatI	CATG	2 cut(s)	67, 162
FauI	CCCGC	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	2 cut(s)	82, 208
Fsp4HI	GCNGC	1 cut(s)	197
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	199, 250, 339
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	71, 166
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	280, 316
Hpy8I	GTNNAC	1 cut(s)	328
HpyCH4III	ACNGT	4 cut(s)	107, 236, 268, 302
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	221, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	71, 166
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	122
LpnPI	CCDG	8 cut(s)	17, 66, 96, 114, 171, 198, 231, 264
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	124
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	1 cut(s)	122
MluCI	AATT	2 cut(s)	190, 346
Mly113I	GGCGCC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	75, 235, 297
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	71, 166
NlaIV	GGNNCC	2 cut(s)	36, 74
NmuCI	GTSAC	1 cut(s)	158
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	198
PluTI	GGCGCC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	36, 74
PspPI	GGNCC	1 cut(s)	248
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	2 cut(s)	160, 314
SfaNI	GCATC	1 cut(s)	230
SfoI	GGCGCC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	190, 346
SsiI	CCGC	3 cut(s)	10, 25, 196
SspDI	GGCGCC	1 cut(s)	34
SspI	AATATT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	4 cut(s)	107, 236, 268, 302
TaiI	ACGT	1 cut(s)	160
TasI	AATT	2 cut(s)	190, 346
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	281
TscAI	CASTG	2 cut(s)	241, 328
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	2 cut(s)	241, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.