Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004334

Physical Location & Seq

Genomic Coordinates Reverse (-)

59567719 .. 59568261

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59417

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGAACAAAAATGGTTGAGCGGGTAATAAATATGCGGAAACTGGCGCCCCCCAAGCACGATGACAAACAATCTCCTCATGGGAACCACTCTGGGAAGTCATCGTCATCCCCAGACAGTTCAGGCTTTGGTAGATCACTCTCAAAGAAATCCCTTGATATGGCTATACATCACATGGATATAAGGCGAAGCATTCCTGGTAATTTGCGGCCGTTGATGACAAATATTCCTGCATCCTCTATGGACAGTGTGAGATTAGGGCCTGCACGAAGCAGAACGGTTAGTGTTTCAGATTCTCCTCTTGCCACCAACAGTAATGATAGCTCTGAAGTCAGTGTAAACAACAATGGCCTTTGTTTAGATGCGAGTGGAGTAGAAGATGATATTGGCAGTGAGAGAGGTGGTCGATCTCCTGCCAGTGTGCATGGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.27

Weight (kDa)

9.64

Isoelectric Point (pI)

69.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40070 AT2G40070 AT2G40070
fragaria_vesca	FvH4_7g24310 FvH4_7g24310 FvH4_7g24320 FvH4_7g24320
malus_domestica	MD01G1132400.v1.1 MD07G1220000.v1.1 MD07G1220200.v1.1
prunus_persica	Prupe.2G248600_v2.0.a1 Prupe.2G248600_v2.0.a1
pyrus_communis	pycom01g16900 pycom07g19910
rosa_chinensis	RchiOBHm_Chr1g0369941 RchiOBHm_Chr1g0369981
rosa_laevigata	RLG00000027081 RLG00000027086
rosa_multiflora	Rmu_co8421201.1_g000001 Rmu_co8476543.1_g000001 Rmu_sc0008140.1_g000014 Rmu_sc0008140.1_g000020
rosa_roxburghii	Rroxscaffold_4G00286910 Rroxscaffold_4G00287130
rosa_rugosa	Rorug01G0352900
rosa_samantha	Rh1AG361700 Rh1AG361800 Rh1BG325000 Rh1CG338200 Rh1CG338300 Rh1DG355400
rosa_wichuraiana	Rw1G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	3 cut(s)	22, 37, 208
AcoI	YGGCCR	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	1 cut(s)	324
AluI	AGCT	1 cut(s)	324
AoxI	GGCC	3 cut(s)	209, 260, 349
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	50
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	48, 86
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	242, 352
BsaHI	GRCGYC	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	48, 417
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	107, 233
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	2 cut(s)	48, 417
BseRI	GAGGAG	2 cut(s)	66, 288
BseX3I	CGGCCG	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	211, 262, 351
BshNI	GGYRCC	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	211, 262, 351
Bsp143I	GATC	2 cut(s)	134, 407
BspACI	CCGC	3 cut(s)	22, 37, 208
BspANI	GGCC	3 cut(s)	211, 262, 351
BspLI	GGNNCC	2 cut(s)	48, 86
BspT107I	GGYRCC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	48, 417
BssMI	GATC	2 cut(s)	134, 407
BssNI	GRCGYC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	4 cut(s)	119, 248, 280, 314
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	107, 233
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	137, 410
BstMBI	GATC	2 cut(s)	134, 407
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstZI	CGGCCG	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	211, 262, 351
BtsCI	GGATG	2 cut(s)	107, 233
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	4 cut(s)	253, 340, 397, 424
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	260
CviAII	CATG	3 cut(s)	80, 175, 425
CviJI	RGCY	6 cut(s)	126, 164, 211, 262, 324, 351
CviKI_1	RGCY	6 cut(s)	126, 164, 211, 262, 324, 351
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	2 cut(s)	136, 409
DpnII	GATC	2 cut(s)	134, 407
EaeI	YGGCCR	1 cut(s)	209
EagI	CGGCCG	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	196
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
FaeI	CATG	3 cut(s)	83, 178, 428
FaiI	YATR	8 cut(s)	35, 81, 161, 167, 176, 182, 242, 426
FatI	CATG	3 cut(s)	79, 174, 424
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	2 cut(s)	94, 220
Fsp4HI	GCNGC	1 cut(s)	209
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	211, 262, 351
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	83, 178, 428
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	292, 328
Hpy8I	GTNNAC	1 cut(s)	340
HpyCH4III	ACNGT	4 cut(s)	119, 248, 280, 314
HpyCH4V	TGCA	3 cut(s)	233, 266, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	83, 178, 428
HspAI	GCGC	1 cut(s)	47
KasI	GGCGCC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	134, 407
LweI	GCATC	2 cut(s)	242, 352
MalI	GATC	2 cut(s)	136, 409
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	2 cut(s)	134, 407
MboII	GAAGA	1 cut(s)	389
MluCI	AATT	1 cut(s)	202
Mly113I	GGCGCC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	87, 247, 309, 392
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	55
NarI	GGCGCC	1 cut(s)	47
NdeII	GATC	2 cut(s)	134, 407
NlaIII	CATG	3 cut(s)	83, 178, 428
NlaIV	GGNNCC	2 cut(s)	48, 86
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	210
PluTI	GGCGCC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	48, 86
PspPI	GGNCC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	2 cut(s)	134, 407
Sau96I	GGNCC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	3 cut(s)	326, 403, 434
SfaNI	GCATC	2 cut(s)	242, 352
SfoI	GGCGCC	1 cut(s)	48
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	3 cut(s)	22, 37, 208
SspDI	GGCGCC	1 cut(s)	46
SspI	AATATT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	4 cut(s)	119, 248, 280, 314
TaqI	TCGA	1 cut(s)	406
TasI	AATT	1 cut(s)	202
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	4 cut(s)	253, 340, 397, 424
TspRI	CASTG	4 cut(s)	253, 340, 397, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.