Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004334

Physical Location & Seq

Genomic Coordinates Forward (+)

46995052 .. 47000583

Gene Structure 5532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0352900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2922 bp

ATGGATAACCCAGAAATAACTTTGCAAGAGATAGTTCAGAGTTCAGTGCCAAATTCAGAACCAATTAAAGGAAAATTTGTCGTGAAAGATGGGCACAAAACAAGTAAAAGATGGTCAAGACTAGGGACTTCAAAGAGTGCAGTAGGAAAAATGGTACTCAAGGAAATTCTTGATCCTGAGGGACCAATCCTTGAAAAGTGGAATCTGATATTTGTAATATCATGTCTCTTTGCTGTGTTACTGGATCCTTTGTTCCTCTACACTCCTCTAATCAACCAAGACATGAAGTGCATTGGACTAGACAAAAAGTTGAAGATAGCAGCTGTGGTTTTTCGATCGATCACAGATTTCGTTTATATAGTGAAAATCATTTTTCATGTTTATAAACTAGAGAAAGTAACAGTTATGGCTCTACGGCAGTCATCCATCCTAGTTGACGTTTTAGCTGTTCTCCCTATTCCACAGGTAGTAATTCTCATTTTCTTTAGGGGCTCGAGATCTTTGGAAGCAATTAAGTTTATGAACTTTCTAGTTCTCGTCCAATACGTTCCACGAGTTCTGCGCATCTATCTCGCATGTAAGGAGTACAAAAATTCTCCAAAAGGAAAGTTTGGATTATGGATAAAAGGTGGACTCAATTTCTTTATGTACACTCTTGCTAGTCATATATTTGGAGCCTTTTGGTACTTTTTCTCTATTCAACGAATGTTGACATGCTGGCGATATGCTTGTCGAAGTGAAGATGGATGTAAACGTAGTACTTTTGACTGTCATGATCATCGTAGCAACAGATATATCAGATTGCTAAATGATAAATGTCCTACAAATCCATCGGATTCAACGCTCTTTGATTTTGGCATATTTCTCGATGCTCTTCAATCAAGTATAGTTGGATCAAAAAATTATTCACAGAAGTTGTCGAAATGTTTTTGGTGGGGTCTACGAAATCTGAGTTCTCTCGGTTCAAACCTCCAACCTAGTATCAATACATGGGAGACCCTCTTCGCGACATTTACTTCTATTACTGGCTTGCTACTGTTTTTATACCTAATTGGAAATCTACAGATGTATATGCAGGTGGAATCAGCAAGTAAAGAGCAACTACGATGGAAGACAGAACTTGAAAATATGATGAGAACTGAAAGAAAGATGAGAATTGAACGGAGCAAGGGTCAGGAGGTAGAACAATGGCTAGCCAAAAATGGTCTCCCTATGCGTTTAATGCCCGAGATCATGGAAAAGGTAGTACAAGTGGATTTAGAACAAAACAGGGATGTTGATGTGGAGAATATCCTTTCGATTCTTCCCTTGCAACTTCAAAGGGATATTTTAGTTTATAAGGAGAAGTTGGAAGAGGAAGGTCGAAAGATAGAGTTGTGGTTATCTGAAAATCGCCTCCCAATGGGTTTAAAGTCGGAGATCATGGAAAAGGTGGTGCAACAAAAACGTGAAGAAAATAGGGATGTTCATGTGGATAATTTCCTATCTATTCTACCAGAGGAACGTCGGAGCTATATCGAAAGTTATAAACGAAAATTGCAAGAGAAAGACTTGGAAGTTGGCTCGTGGTTATCTAAAAATGGCATCCCCGTGGATACAAAGTCACAGATCATGGAGAAGGTTCAAGTAGAACTTGAAGAAAACAGGGATGTGGAAGTGAAGAATATCCTCTCCATTCTTCCTTCAGATCTCCAAAGACGTCTTGAATGGTATATGCCTTTGAGTAGGCTGAAGCGGGTGACATTGCTTGAAAGAATGGATGAAAGAGTGTTGAAAGCGATTTGTGAGAATCTTCAGCCTATAGAGTTTCCAGCCAAACTCGTCATTATGCAAGAGGATCAACCAATTGAAGATCTGTTCTTCATTGTAGTCGGATCTGTACGACGGCATTCGAGAAATAGGCCGATGTTCCAGGAATACGAAACTGAATTATGCGGAGAAGAACTTCTGGTTTGGCCATTAACGACCTCCTTTCCTGCCGTATTACCCAGAGCAACCAAGACCGTTATGGTGGGTGAAGGTTTTAGTGCCCTTCTCCTTACGGCCAGTGATATAAAGAGTGTCGGCTCTAAATTCAGGCCACAGTGGGATCTCATTACTTCTTACTGGTTGACTATGCTAAAGAAAGTGCCAAAGCTTCAATATATGGATGAAGAAGTTTTGAAAGAATTCTTACCGCATCTTAACAAGCAGGATCAATTTGCAGCTAGATCCTCCTATGGTATTCAGGAGAATGTACCACTTAAATCCATGTACTTCATCACAGAGGGATCTCTAAAATTTACAAAAAGTGATAACGGTGATGAGGAGTTTTATCTTTCTGCAGGGGAATTCTATGGAGAAGAACTCCTAGATTGGGTATTAGATACGTCCTTTCCTGCCATAACCCCCATTTCCACCCATTCTGCTCTTTGCAGCGATCACAATGAAGCTACCGTGTTGGCTATCACCGCCGAGGACTTAAAGAGTGTAGCTTCTAAATTCAGCTCGCACTTCAGCACCCTTCAAACGGATTCTCAATTTGATCTTTCAACTTTTGTCAACTTGACTAGGCTAAAGAAAGTGCCAAAACTTCAAACTATGGACGAAGAAGTTTTGAAAGCAATCTCTGAGCATCTTATAACCAAGGTGTTTAATTATCTGAAGATCATTGAAGAGGGAAAACCACTTCATATGATGTTATTCATTGTGAAGGGAAATGCATACCTAGAGAAGAAACATAGCACAGATAGAGTGATGCTAAAGCCTGGACAATTCTATGGAGAAGAACTACTAGATTGGCCATCATGGACCTCTTTTCCTACCATGCCCTTATCAATGTTCACTGTCAAAGTACACCATGGAGAAGCTGTTGAATTCCTCGTTCTCATGGCCAACGATCTGGAGAAAGTAGTGTCTAAATTCAGGTCGCATTTCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

973

Amino Acids

112.75

Weight (kDa)

7.54

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	67 - 362	1.6e-09	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40070 AT2G40070 AT2G40070
fragaria_vesca	FvH4_7g24310 FvH4_7g24310 FvH4_7g24320 FvH4_7g24320
malus_domestica	MD01G1132400.v1.1 MD07G1220000.v1.1 MD07G1220200.v1.1
prunus_persica	Prupe.2G248600_v2.0.a1 Prupe.2G248600_v2.0.a1
pyrus_communis	pycom01g16900 pycom07g19910
rosa_chinensis	RchiOBHm_Chr1g0369941 RchiOBHm_Chr1g0369981
rosa_laevigata	RLG00000027081 RLG00000027086
rosa_multiflora	Rmu_co8421201.1_g000001 Rmu_co8476543.1_g000001 Rmu_sc0008140.1_g000014 Rmu_sc0008140.1_g000020
rosa_roxburghii	Rroxscaffold_4G00286910 Rroxscaffold_4G00287130
rosa_rugosa	Rorug01G0352900
rosa_samantha	Rh1AG361700 Rh1AG361800 Rh1BG325000 Rh1CG338200 Rh1CG338300 Rh1DG355400
rosa_wichuraiana	Rw1G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	384, 1338, 1527, 2621
AarI	CACCTGC	1 cut(s)	1066
AatII	GACGTC	1 cut(s)	1702
Acc16I	TGCGCA	1 cut(s)	563
Acc36I	ACCTGC	1 cut(s)	1066
AccI	GTMKAC	1 cut(s)	940
AccII	CGCG	1 cut(s)	1007
AciI	CCGC	4 cut(s)	1735, 1935, 2177, 2451
AcoI	YGGCCR	4 cut(s)	1955, 2043, 2780, 2871
AcuI	CTGAAG	5 cut(s)	1668, 1751, 1778, 2479, 2663
AcyI	GRCGYC	1 cut(s)	1699
AfiI	CCNNNNNNNGG	4 cut(s)	68, 1402, 2356, 2509
AjnI	CCWGG	2 cut(s)	1911, 2746
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
Alw26I	GTCTC	3 cut(s)	230, 989, 1211
Ama87I	CYCGRG	2 cut(s)	493, 1226
AoxI	GGCC	6 cut(s)	1901, 1955, 2043, 2078, 2780, 2871
ApeKI	GCWGC	3 cut(s)	320, 2204, 2415
Asp700I	GAANNNNTTC	2 cut(s)	1944, 2168
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	182, 2790
AsuHPI	GGTGA	4 cut(s)	1750, 2027, 2312, 2440
AsuNHI	GCTAGC	1 cut(s)	1192
AvaI	CYCGRG	2 cut(s)	493, 1226
AvaII	GGWCC	2 cut(s)	182, 2790
AxyI	CCTNAGG	1 cut(s)	177
BaeGI	GKGCMC	2 cut(s)	96, 2032
BalI	TGGCCA	3 cut(s)	1957, 2782, 2873
BamHI	GGATCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	494
BauI	CACGAG	2 cut(s)	552, 1564
BbsI	GAAGAC	1 cut(s)	1118
BbvI	GCAGC	3 cut(s)	332, 2216, 2427
BccI	CCATC	7 cut(s)	83, 105, 434, 737, 838, 1101, 2791
BceAI	ACGGC	4 cut(s)	431, 1901, 1964, 2058
BcgI	CGANNNNNNTGC	4 cut(s)	553, 587, 847, 881
BciT130I	CCWGG	2 cut(s)	1913, 2748
BciVI	GTATCC	1 cut(s)	1588
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	3 cut(s)	230, 989, 1211
BfmI	CTRYAG	3 cut(s)	1061, 1800, 2322
BfuAI	ACCTGC	1 cut(s)	1066
BfuI	GTATCC	1 cut(s)	1588
BglII	AGATCT	3 cut(s)	497, 1687, 1852
BisI	GCNGC	3 cut(s)	321, 2205, 2416
BlsI	GCNGC	3 cut(s)	322, 2206, 2417
BmcAI	AGTACT	1 cut(s)	760
Bme1390I	CCNGG	2 cut(s)	1913, 2748
Bme18I	GGWCC	2 cut(s)	182, 2790
BmeT110I	CYCGRG	2 cut(s)	493, 1226
BmgT120I	GGNCC	2 cut(s)	182, 2790
BmiI	GGNNCC	3 cut(s)	183, 246, 676
BmrFI	CCNGG	2 cut(s)	1913, 2748
BmsI	GCATC	6 cut(s)	573, 859, 1593, 2188, 2623, 2727
BmtI	GCTAGC	1 cut(s)	1196
BpiI	GAAGAC	1 cut(s)	1118
BplI	GAGNNNNNCTC	2 cut(s)	2331, 2363
BpmI	CTGGAG	1 cut(s)	2903
BpuEI	CTTGAG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	1699
BsaI	GGTCTC	2 cut(s)	989, 1211
BsaJI	CCNNGG	4 cut(s)	1590, 2454, 2625, 2839
BsaXI	ACNNNNNCTCC	4 cut(s)	1156, 1186, 2835, 2865
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 1402, 2356, 2509
Bse1I	ACTGG	4 cut(s)	246, 1030, 2046, 2111
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	1742
BseBI	CCWGG	2 cut(s)	1913, 2748
BseCI	ATCGAT	1 cut(s)	338
BseDI	CCNNGG	4 cut(s)	1590, 2454, 2625, 2839
BseGI	GGATG	9 cut(s)	422, 426, 752, 1279, 1468, 1584, 1654, 1765, 2155
BseLI	CCNNNNNNNGG	4 cut(s)	68, 1402, 2356, 2509
BseMI	GCAATG	1 cut(s)	1742
BseMII	CTCAG	3 cut(s)	168, 941, 2601
BseNI	ACTGG	4 cut(s)	246, 1030, 2046, 2111
BseRI	GAGGAG	2 cut(s)	255, 2321
BseSI	GKGCMC	2 cut(s)	96, 2032
BseXI	GCAGC	3 cut(s)	332, 2216, 2427
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	1007
Bsh1285I	CGRYCG	1 cut(s)	338
BshFI	GGCC	6 cut(s)	1903, 1957, 2045, 2080, 2782, 2873
BshVI	ATCGAT	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	338
BsiHKCI	CYCGRG	2 cut(s)	493, 1226
BslFI	GGGAC	2 cut(s)	139, 195
BslI	CCNNNNNNNGG	4 cut(s)	68, 1402, 2356, 2509
BsmAI	GTCTC	3 cut(s)	230, 989, 1211
BsmFI	GGGAC	2 cut(s)	139, 195
BsmI	GAATGC	1 cut(s)	1888
BsnI	GGCC	6 cut(s)	1903, 1957, 2045, 2080, 2782, 2873
Bso31I	GGTCTC	2 cut(s)	989, 1211
BsoBI	CYCGRG	2 cut(s)	493, 1226
Bsp1286I	GDGCHC	3 cut(s)	96, 494, 2032
Bsp1407I	TGTACA	1 cut(s)	648
Bsp19I	CCATGG	1 cut(s)	2839
Bsp68I	TCGCGA	1 cut(s)	1007
BspACI	CCGC	4 cut(s)	1735, 1935, 2177, 2451
BspANI	GGCC	6 cut(s)	1903, 1957, 2045, 2080, 2782, 2873
BspCNI	CTCAG	3 cut(s)	169, 942, 2602
BspDI	ATCGAT	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	1007
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	3 cut(s)	183, 246, 676
BspMAI	CTGCAG	1 cut(s)	2326
BspMI	ACCTGC	1 cut(s)	1066
BspOI	GCTAGC	1 cut(s)	1196
BspQI	GCTCTTC	1 cut(s)	879
BspTNI	GGTCTC	2 cut(s)	989, 1211
BsrDI	GCAATG	1 cut(s)	1742
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	4 cut(s)	246, 1030, 2046, 2111
BssECI	CCNNGG	4 cut(s)	1590, 2454, 2625, 2839
BssNI	GRCGYC	1 cut(s)	1699
BssSI	CACGAG	2 cut(s)	552, 1564
BssT1I	CCWWGG	2 cut(s)	2625, 2839
Bst2BI	CACGAG	2 cut(s)	552, 1564
Bst2UI	CCWGG	2 cut(s)	1913, 2748
Bst4CI	ACNGT	8 cut(s)	403, 770, 1038, 2005, 2085, 2300, 2437, 2827
Bst6I	CTCTTC	4 cut(s)	879, 1007, 1347, 2649
BstACI	GRCGYC	1 cut(s)	1699
BstAUI	TGTACA	1 cut(s)	648
BstC8I	GCNNGC	4 cut(s)	719, 1031, 1194, 2489
BstDEI	CTNAG	3 cut(s)	177, 950, 2610
BstDSI	CCRYGG	2 cut(s)	1590, 2839
BstF5I	GGATG	9 cut(s)	422, 426, 752, 1279, 1468, 1584, 1654, 1765, 2155
BstFNI	CGCG	1 cut(s)	1007
BstHHI	GCGC	1 cut(s)	564
BstMAI	GTCTC	3 cut(s)	230, 989, 1211
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	2 cut(s)	1222, 2450
BstNI	CCWGG	2 cut(s)	1913, 2748
BstNSI	RCATGY	2 cut(s)	579, 717
BstSCI	CCNGG	2 cut(s)	1911, 2746
BstSFI	CTRYAG	3 cut(s)	1061, 1800, 2322
BstSLI	GKGCMC	2 cut(s)	96, 2032
BstUI	CGCG	1 cut(s)	1007
BstV1I	GCAGC	3 cut(s)	332, 2216, 2427
BstV2I	GAAGAC	1 cut(s)	1118
BstX2I	RGATCY	8 cut(s)	244, 497, 1687, 1852, 1874, 2089, 2210, 2270
BstXI	CCANNNNNNTGG	1 cut(s)	2881
BstYI	RGATCY	8 cut(s)	244, 497, 1687, 1852, 1874, 2089, 2210, 2270
Bsu15I	ATCGAT	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	1588
BsuRI	GGCC	6 cut(s)	1903, 1957, 2045, 2080, 2782, 2873
BsuTUI	ATCGAT	1 cut(s)	338
BtgI	CCRYGG	2 cut(s)	1590, 2839
BtsCI	GGATG	9 cut(s)	422, 426, 752, 1279, 1468, 1584, 1654, 1765, 2155
BtsIMutI	CAGTG	4 cut(s)	51, 2053, 2090, 2823
BtuMI	TCGCGA	1 cut(s)	1007
BveI	ACCTGC	1 cut(s)	1066
Cac8I	GCNNGC	4 cut(s)	719, 1031, 1194, 2489
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	182, 2790
ClaI	ATCGAT	1 cut(s)	338
DdeI	CTNAG	3 cut(s)	177, 950, 2610
DraI	TTTAAA	1 cut(s)	1410
EaeI	YGGCCR	4 cut(s)	1955, 2043, 2780, 2871
Eam1104I	CTCTTC	4 cut(s)	879, 1007, 1347, 2649
EarI	CTCTTC	4 cut(s)	879, 1007, 1347, 2649
Eco130I	CCWWGG	2 cut(s)	2625, 2839
Eco24I	GRGCYC	1 cut(s)	494
Eco31I	GGTCTC	2 cut(s)	989, 1211
Eco47I	GGWCC	2 cut(s)	182, 2790
Eco57I	CTGAAG	5 cut(s)	1668, 1751, 1778, 2479, 2663
Eco81I	CCTNAGG	1 cut(s)	177
Eco88I	CYCGRG	2 cut(s)	493, 1226
EcoRI	GAATTC	3 cut(s)	2168, 2330, 2855
EcoRII	CCWGG	2 cut(s)	1911, 2746
EcoT14I	CCWWGG	2 cut(s)	2625, 2839
EcoT22I	ATGCAT	1 cut(s)	2704
EcoT38I	GRGCYC	1 cut(s)	494
ErhI	CCWWGG	2 cut(s)	2625, 2839
FalI	AAGNNNNNCTT	2 cut(s)	1617, 1649
FaqI	GGGAC	2 cut(s)	139, 195
FauI	CCCGC	1 cut(s)	1728
FauNDI	CATATG	1 cut(s)	2673
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	940
Fnu4HI	GCNGC	3 cut(s)	321, 2205, 2416
FokI	GGATG	9 cut(s)	409, 413, 759, 1286, 1475, 1571, 1661, 1772, 2162
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	3 cut(s)	321, 2205, 2416
FspI	TGCGCA	1 cut(s)	563
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	3 cut(s)	321, 2205, 2416
GsuI	CTGGAG	1 cut(s)	2903
HaeIII	GGCC	6 cut(s)	1903, 1957, 2045, 2080, 2782, 2873
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	1699
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	4 cut(s)	436, 711, 2112, 2542
HindII	GTYRAC	4 cut(s)	436, 711, 2112, 2542
HindIII	AAGCTT	1 cut(s)	2135
HinfI	GANTC	7 cut(s)	202, 633, 836, 1082, 1300, 1789, 2513
HphI	GGTGA	4 cut(s)	1750, 2027, 2312, 2440
Hpy99I	CGWCG	2 cut(s)	1509, 1887
HpyAV	CCTTC	7 cut(s)	1352, 1612, 1692, 2012, 2042, 2513, 2686
HpyCH4III	ACNGT	8 cut(s)	403, 770, 1038, 2005, 2085, 2300, 2437, 2827
HpyCH4IV	ACGT	7 cut(s)	438, 546, 754, 1447, 1504, 1699, 2369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1222, 2450
HpyF3I	CTNAG	3 cut(s)	177, 950, 2610
HpySE526I	ACGT	7 cut(s)	438, 546, 754, 1447, 1504, 1699, 2369
Hsp92I	GRCGYC	1 cut(s)	1699
HspAI	GCGC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	775
LguI	GCTCTTC	1 cut(s)	879
LmnI	GCTCC	3 cut(s)	674, 1164, 1509
Lsp1109I	GCAGC	3 cut(s)	332, 2216, 2427
LweI	GCATC	6 cut(s)	573, 859, 1593, 2188, 2623, 2727
MaeII	ACGT	7 cut(s)	438, 546, 754, 1447, 1504, 1699, 2369
MaeIII	GTNAC	4 cut(s)	237, 397, 1602, 1738
MfeI	CAATTG	1 cut(s)	1845
MflI	RGATCY	8 cut(s)	244, 497, 1687, 1852, 1874, 2089, 2210, 2270
MhlI	GDGCHC	3 cut(s)	96, 494, 2032
MlsI	TGGCCA	3 cut(s)	1957, 2782, 2873
MluNI	TGGCCA	3 cut(s)	1957, 2782, 2873
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	6 cut(s)	871, 997, 1329, 1395, 1487, 1852
Mox20I	TGGCCA	3 cut(s)	1957, 2782, 2873
Mph1103I	ATGCAT	1 cut(s)	2704
MroXI	GAANNNNTTC	2 cut(s)	1944, 2168
MscI	TGGCCA	3 cut(s)	1957, 2782, 2873
MseI	TTAA	9 cut(s)	66, 513, 1220, 1409, 1961, 2184, 2244, 2462, 2634
MslI	CAYNNNNRTG	1 cut(s)	1589
Msp20I	TGGCCA	3 cut(s)	1957, 2782, 2873
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	1913, 2748
MunI	CAATTG	1 cut(s)	1845
Mva1269I	GAATGC	1 cut(s)	1888
MvaI	CCWGG	2 cut(s)	1913, 2748
MvnI	CGCG	1 cut(s)	1007
MwoI	GCNNNNNNNGC	2 cut(s)	1222, 2450
NcoI	CCATGG	1 cut(s)	2839
NdeI	CATATG	1 cut(s)	2673
NheI	GCTAGC	1 cut(s)	1192
NlaIV	GGNNCC	3 cut(s)	183, 246, 676
NmeAIII	GCCGAG	1 cut(s)	2479
NmuCI	GTSAC	2 cut(s)	1602, 1738
NruI	TCGCGA	1 cut(s)	1007
NsbI	TGCGCA	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	2704
NspI	RCATGY	2 cut(s)	579, 717
PaeR7I	CTCGAG	1 cut(s)	493
PagI	TCATGA	1 cut(s)	772
PaqCI	CACCTGC	1 cut(s)	1066
PciSI	GCTCTTC	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PctI	GAATGC	1 cut(s)	1888
PdmI	GAANNNNTTC	2 cut(s)	1944, 2168
PfeI	GAWTC	6 cut(s)	202, 836, 1082, 1300, 1789, 2513
PfoI	TCCNGGA	1 cut(s)	1911
PkrI	GCNGC	3 cut(s)	322, 2206, 2417
Ple19I	CGATCG	1 cut(s)	338
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
PsiI	TTATAA	4 cut(s)	384, 1338, 1527, 2621
Psp6I	CCWGG	2 cut(s)	1911, 2746
PspGI	CCWGG	2 cut(s)	1911, 2746
PspN4I	GGNNCC	3 cut(s)	183, 246, 676
PspPI	GGNCC	2 cut(s)	182, 2790
PstI	CTGCAG	1 cut(s)	2326
PsuI	RGATCY	8 cut(s)	244, 497, 1687, 1852, 1874, 2089, 2210, 2270
PvuI	CGATCG	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	1007
RseI	CAYNNNNRTG	1 cut(s)	1589
SapI	GCTCTTC	1 cut(s)	879
SaqAI	TTAA	9 cut(s)	66, 513, 1220, 1409, 1961, 2184, 2244, 2462, 2634
SatI	GCNGC	3 cut(s)	321, 2205, 2416
Sau96I	GGNCC	2 cut(s)	182, 2790
ScaI	AGTACT	1 cut(s)	760
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	2 cut(s)	1913, 2748
SduI	GDGCHC	3 cut(s)	96, 494, 2032
SfaNI	GCATC	6 cut(s)	573, 859, 1593, 2188, 2623, 2727
SfcI	CTRYAG	3 cut(s)	1061, 1800, 2322
Sfr274I	CTCGAG	1 cut(s)	493
SinI	GGWCC	2 cut(s)	182, 2790
SlaI	CTCGAG	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	1589
SmlI	CTYRAG	2 cut(s)	158, 493
SmoI	CTYRAG	2 cut(s)	158, 493
SsiI	CCGC	4 cut(s)	1735, 1935, 2177, 2451
StyD4I	CCNGG	2 cut(s)	1911, 2746
StyI	CCWWGG	2 cut(s)	2625, 2839
TaaI	ACNGT	8 cut(s)	403, 770, 1038, 2005, 2085, 2300, 2437, 2827
TaiI	ACGT	7 cut(s)	441, 549, 757, 1450, 1507, 1702, 2372
TatI	WGTACW	6 cut(s)	585, 648, 758, 1246, 2253, 2833
TfiI	GAWTC	6 cut(s)	202, 836, 1082, 1300, 1789, 2513
Tru1I	TTAA	9 cut(s)	66, 513, 1220, 1409, 1961, 2184, 2244, 2462, 2634
Tru9I	TTAA	9 cut(s)	66, 513, 1220, 1409, 1961, 2184, 2244, 2462, 2634
TscAI	CASTG	4 cut(s)	51, 2053, 2090, 2830
TseFI	GTSAC	2 cut(s)	1602, 1738
TseI	GCWGC	3 cut(s)	320, 2204, 2415
Tsp45I	GTSAC	2 cut(s)	1602, 1738
TspGWI	ACGGA	2 cut(s)	1177, 2525
TspRI	CASTG	4 cut(s)	51, 2053, 2090, 2830
VpaK11BI	GGWCC	2 cut(s)	182, 2790
XceI	RCATGY	2 cut(s)	579, 717
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2005
XhoI	CTCGAG	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	940
XmnI	GAANNNNTTC	2 cut(s)	1944, 2168
ZraI	GACGTC	1 cut(s)	1700
ZrmI	AGTACT	1 cut(s)	760
Zsp2I	ATGCAT	1 cut(s)	2704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.