Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8476543.1

Orthogroup ID

OG0004334

Physical Location & Seq

Genomic Coordinates Forward (+)

190 .. 2128

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8476543.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgaatcggagttttagggctcaggagtcgcaaatgcaggcgatgatgaagcagaggcagcagctcagggcctcaatgaggaaggagaaggaagaagagctggctttgtttctagagatgaagaagagggagaaggaaaggaacgatcttcttctcaatagttctgaagagttcgatgcgccattaggggctaaacccggaacttctcccatttttaatatatcctcatcaacgccggcgcctgcacgcaagactggagctgatgattttctcaattctgagaatgataagaatgactatgattggcttttaactccgcctgggactcctcttttcccttcattggaaatggaatcacataagaccatgatgagtcagcttggaaccccaaaggcacgtccgactgcactcaaatctagactagcaaacccccagccagagcctgctgctaggagcaacttagtacctaaacaatcagcttcttcccctggtttgaattcttcaagttcaggtatccggaggccctcatcatctgggggtccaggatcaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.26

Weight (kDa)

9.73

Isoelectric Point (pI)

76.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40070 AT2G40070 AT2G40070
fragaria_vesca	FvH4_7g24310 FvH4_7g24310 FvH4_7g24320 FvH4_7g24320
malus_domestica	MD01G1132400.v1.1 MD07G1220000.v1.1 MD07G1220200.v1.1
prunus_persica	Prupe.2G248600_v2.0.a1 Prupe.2G248600_v2.0.a1
pyrus_communis	pycom01g16900 pycom07g19910
rosa_chinensis	RchiOBHm_Chr1g0369941 RchiOBHm_Chr1g0369981
rosa_laevigata	RLG00000027081 RLG00000027086
rosa_multiflora	Rmu_co8421201.1_g000001 Rmu_co8476543.1_g000001 Rmu_sc0008140.1_g000014 Rmu_sc0008140.1_g000020
rosa_roxburghii	Rroxscaffold_4G00286910 Rroxscaffold_4G00287130
rosa_rugosa	Rorug01G0352900
rosa_samantha	Rh1AG361700 Rh1AG361800 Rh1BG325000 Rh1CG338200 Rh1CG338300 Rh1DG355400
rosa_wichuraiana	Rw1G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	516
AciI	CCGC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	78, 343
AgsI	TTSAA	2 cut(s)	496, 504
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	3 cut(s)	319, 487, 541
AluBI	AGCT	5 cut(s)	64, 100, 260, 379, 479
AluI	AGCT	5 cut(s)	64, 100, 260, 379, 479
AlwNI	CAGNNNCTG	1 cut(s)	443
Aor13HI	TCCGGA	1 cut(s)	516
AoxI	GGCC	2 cut(s)	69, 521
ApeKI	GCWGC	3 cut(s)	58, 61, 446
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	2 cut(s)	181, 241
AspS9I	GGNCC	3 cut(s)	69, 522, 539
AsuC2I	CCSGG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	22
BbvI	GCAGC	3 cut(s)	70, 73, 433
BciT130I	CCWGG	3 cut(s)	321, 489, 543
BciVI	GTATCC	1 cut(s)	524
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	4 cut(s)	113, 417, 422, 450
BfoI	RGCGCY	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	524
BisI	GCNGC	3 cut(s)	59, 62, 447
BlsI	GCNGC	3 cut(s)	60, 63, 448
Bme1390I	CCNGG	4 cut(s)	198, 321, 489, 543
Bme18I	GGWCC	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	69, 522, 539
BmiI	GGNNCC	3 cut(s)	240, 385, 540
BmrFI	CCNGG	4 cut(s)	198, 321, 489, 543
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	2 cut(s)	21, 65
BpuMI	CCSGG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	320, 487
BsaWI	WCCGGW	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 343
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	259
BseAI	TCCGGA	1 cut(s)	516
BseBI	CCWGG	3 cut(s)	321, 489, 543
BseDI	CCNNGG	2 cut(s)	320, 487
BseLI	CCNNNNNNNGG	2 cut(s)	78, 343
BseMII	CTCAG	3 cut(s)	35, 79, 270
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	70, 73, 433
BseYI	CCCAGC	1 cut(s)	432
BsgI	GTGCAG	2 cut(s)	228, 390
BshFI	GGCC	2 cut(s)	71, 523
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	3 cut(s)	198, 236, 517
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	78, 343
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	71, 523
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp13I	TCCGGA	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	145, 545
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	2 cut(s)	71, 523
BspCNI	CTCAG	3 cut(s)	34, 78, 271
BspEI	TCCGGA	1 cut(s)	516
BspLI	GGNNCC	3 cut(s)	240, 385, 540
BspQI	GCTCTTC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	320, 487
BssMI	GATC	2 cut(s)	145, 545
BssNI	GRCGYC	1 cut(s)	239
Bst2UI	CCWGG	3 cut(s)	321, 489, 543
Bst6I	CTCTTC	3 cut(s)	90, 119, 162
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	6 cut(s)	39, 102, 237, 243, 247, 444
BstDEI	CTNAG	4 cut(s)	21, 65, 279, 460
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	181, 241
BstKTI	GATC	2 cut(s)	148, 548
BstMBI	GATC	2 cut(s)	145, 545
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	3 cut(s)	321, 489, 543
BstSCI	CCNGG	4 cut(s)	196, 319, 487, 541
BstV1I	GCAGC	3 cut(s)	70, 73, 433
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	71, 523
BtgZI	GCGATG	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	398
Cac8I	GCNNGC	6 cut(s)	39, 102, 237, 243, 247, 444
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	2 cut(s)	181, 241
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	3 cut(s)	69, 522, 539
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	1 cut(s)	367
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	4 cut(s)	21, 65, 279, 460
DinI	GGCGCC	1 cut(s)	240
DpnI	GATC	2 cut(s)	147, 547
DpnII	GATC	2 cut(s)	145, 545
Eam1104I	CTCTTC	3 cut(s)	90, 119, 162
EarI	CTCTTC	3 cut(s)	90, 119, 162
EciI	GGCGGA	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoO109I	RGGNCCY	2 cut(s)	69, 522
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	319, 487, 541
EcoT38I	GRGCYC	1 cut(s)	22
EgeI	GGCGCC	1 cut(s)	240
EheI	GGCGCC	1 cut(s)	240
FaeI	CATG	1 cut(s)	370
FaiI	YATR	4 cut(s)	221, 300, 360, 368
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	59, 62, 447
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	59, 62, 447
FspBI	CTAG	4 cut(s)	113, 417, 422, 450
GlaI	GCGC	2 cut(s)	180, 240
GluI	GCNGC	3 cut(s)	59, 62, 447
GsaI	CCCAGC	1 cut(s)	436
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	71, 523
HapII	CCGG	3 cut(s)	198, 236, 517
HhaI	GCGC	2 cut(s)	181, 241
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	2 cut(s)	179, 239
HinP1I	GCGC	2 cut(s)	179, 239
HinfI	GANTC	5 cut(s)	4, 26, 325, 353, 373
HpaII	CCGG	3 cut(s)	198, 236, 517
Hpy188I	TCNGA	4 cut(s)	9, 166, 280, 402
Hpy188III	TCNNGA	5 cut(s)	23, 113, 417, 517, 549
HpyAV	CCTTC	4 cut(s)	76, 82, 127, 348
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	3 cut(s)	37, 245, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	4 cut(s)	21, 65, 279, 460
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	2 cut(s)	179, 239
KasI	GGCGCC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	516
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	145, 545
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	257, 453
Lsp1109I	GCAGC	3 cut(s)	70, 73, 433
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	4 cut(s)	113, 417, 422, 450
MaeII	ACGT	1 cut(s)	397
MalI	GATC	2 cut(s)	147, 547
MboI	GATC	2 cut(s)	145, 545
MboII	GAAGA	9 cut(s)	104, 107, 133, 136, 140, 143, 179, 474, 492
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	274, 496
Mly113I	GGCGCC	1 cut(s)	239
MlyI	GAGTC	3 cut(s)	35, 319, 382
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	8 cut(s)	48, 72, 82, 120, 235, 339, 513, 535
MreI	CGCCGGCG	1 cut(s)	235
MroI	TCCGGA	1 cut(s)	516
MroNI	GCCGGC	1 cut(s)	235
MseI	TTAA	2 cut(s)	216, 311
MspI	CCGG	3 cut(s)	198, 236, 517
MspR9I	CCNGG	4 cut(s)	198, 321, 489, 543
MvaI	CCWGG	3 cut(s)	321, 489, 543
MwoI	GCNNNNNNNGC	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	237
NarI	GGCGCC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	145, 545
NgoMIV	GCCGGC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	3 cut(s)	240, 385, 540
PciSI	GCTCTTC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	4, 353
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	3 cut(s)	60, 63, 448
PleI	GAGTC	3 cut(s)	34, 319, 381
PluTI	GGCGCC	1 cut(s)	242
PpsI	GAGTC	3 cut(s)	34, 319, 381
Psp6I	CCWGG	3 cut(s)	319, 487, 541
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	3 cut(s)	319, 487, 541
PspN4I	GGNNCC	3 cut(s)	240, 385, 540
PspPI	GGNCC	3 cut(s)	69, 522, 539
PstNI	CAGNNNCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	216, 311
SatI	GCNGC	3 cut(s)	59, 62, 447
Sau3AI	GATC	2 cut(s)	145, 545
Sau96I	GGNCC	3 cut(s)	69, 522, 539
SchI	GAGTC	3 cut(s)	35, 319, 382
ScrFI	CCNGG	4 cut(s)	198, 321, 489, 543
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	8 cut(s)	66, 102, 262, 381, 400, 469, 481, 514
SfaNI	GCATC	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	240
SgrAI	CRCCGGYG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	539
Sse9I	AATT	2 cut(s)	274, 496
SsiI	CCGC	1 cut(s)	317
SspDI	GGCGCC	1 cut(s)	238
SspMI	CTAG	4 cut(s)	113, 417, 422, 450
StyD4I	CCNGG	4 cut(s)	196, 319, 487, 541
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	274, 496
TfiI	GAWTC	2 cut(s)	4, 353
Tru1I	TTAA	2 cut(s)	216, 311
Tru9I	TTAA	2 cut(s)	216, 311
TseI	GCWGC	3 cut(s)	58, 61, 446
TspDTI	ATGAA	4 cut(s)	17, 62, 134, 330
VpaK11BI	GGWCC	1 cut(s)	539
XagI	CCTNNNNNAGG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	496
XbaI	TCTAGA	2 cut(s)	112, 416
XspI	CTAG	4 cut(s)	113, 417, 422, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.