Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004334

Physical Location & Seq

Genomic Coordinates Reverse (-)

61242679 .. 61243159

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG338300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAATCGGAGTTTTAGGGCTCAGGAGTCGCAAATGCAGGCGATGATGAAGCAGAGGCAGCAGCTCAGGGCCTCAATGAGGAAGGAGAAGGAAGAAGAGCTGGCTTTGTTTCTAGAGATGAAGAAGAGGGAGAAGGAAAGGAACGATCTTCTTCTCAACAGTTCTGAAGAGTTTGATGCGCCATTAGGGGCTAAACCCGGAACTTCTCCCATTTTTAATATATCCTCATCAACGCCGGCACCTGCACGCAAGACTGGAGCTGATGATTTCCTCAATTCCGAGAATGATAAGAATGACTATGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.8

Weight (kDa)

5.55

Isoelectric Point (pI)

62.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40070 AT2G40070 AT2G40070
fragaria_vesca	FvH4_7g24310 FvH4_7g24310 FvH4_7g24320 FvH4_7g24320
malus_domestica	MD01G1132400.v1.1 MD07G1220000.v1.1 MD07G1220200.v1.1
prunus_persica	Prupe.2G248600_v2.0.a1 Prupe.2G248600_v2.0.a1
pyrus_communis	pycom01g16900 pycom07g19910
rosa_chinensis	RchiOBHm_Chr1g0369941 RchiOBHm_Chr1g0369981
rosa_laevigata	RLG00000027081 RLG00000027086
rosa_multiflora	Rmu_co8421201.1_g000001 Rmu_co8476543.1_g000001 Rmu_sc0008140.1_g000014 Rmu_sc0008140.1_g000020
rosa_roxburghii	Rroxscaffold_4G00286910 Rroxscaffold_4G00287130
rosa_rugosa	Rorug01G0352900
rosa_samantha	Rh1AG361700 Rh1AG361800 Rh1BG325000 Rh1CG338200 Rh1CG338300 Rh1DG355400
rosa_wichuraiana	Rw1G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	78
AluBI	AGCT	3 cut(s)	64, 100, 260
AluI	AGCT	3 cut(s)	64, 100, 260
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	58, 61
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	70, 73
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	59, 62
BlsI	GCNGC	2 cut(s)	60, 63
Bme1390I	CCNGG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	2 cut(s)	21, 65
BpuMI	CCSGG	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	35, 79
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	70, 73
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	198, 236
BslI	CCNNNNNNNGG	1 cut(s)	78
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	34, 78
BspLI	GGNNCC	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	235
BssMI	GATC	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	3 cut(s)	90, 119, 162
BstC8I	GCNNGC	4 cut(s)	39, 102, 237, 247
BstDEI	CTNAG	2 cut(s)	21, 65
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	70, 73
BsuRI	GGCC	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	56
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	4 cut(s)	39, 102, 237, 247
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	69
CviJI	RGCY	7 cut(s)	20, 64, 71, 100, 104, 191, 260
CviKI_1	RGCY	7 cut(s)	20, 64, 71, 100, 104, 191, 260
DdeI	CTNAG	2 cut(s)	21, 65
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	3 cut(s)	90, 119, 162
EarI	CTCTTC	3 cut(s)	90, 119, 162
Eco24I	GRGCYC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	22
FaiI	YATR	2 cut(s)	221, 300
Fnu4HI	GCNGC	2 cut(s)	59, 62
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	59, 62
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	59, 62
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	2 cut(s)	198, 236
HhaI	GCGC	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	2 cut(s)	4, 26
HpaII	CCGG	2 cut(s)	198, 236
Hpy188I	TCNGA	3 cut(s)	9, 166, 280
Hpy188III	TCNNGA	2 cut(s)	23, 113
HpyAV	CCTTC	3 cut(s)	76, 82, 127
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	37, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	21, 65
HspAI	GCGC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	8 cut(s)	8, 23, 52, 86, 211, 240, 249, 255
Lsp1109I	GCAGC	2 cut(s)	70, 73
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	113
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	7 cut(s)	104, 107, 133, 136, 140, 143, 179
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	6 cut(s)	48, 72, 82, 120, 235, 281
MroNI	GCCGGC	1 cut(s)	235
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	198, 236
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	145
NgoMIV	GCCGGC	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	240
PaqCI	CACCTGC	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	60, 63
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	59, 62
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	4 cut(s)	66, 102, 244, 262
SfaNI	GCATC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	274
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	161
TasI	AATT	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	2 cut(s)	58, 61
TspDTI	ATGAA	3 cut(s)	17, 62, 134
XagI	CCTNNNNNAGG	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	112
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.