MD07G1228400.v1.1

cation H( ) antiporter 15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013717
Physical Location & Seq
Reverse (-)
30363595 .. 30366265
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1228400.v1.1.491

Sequence Viewer

Length: 2460 bp
ATGGGCTTAAACATAAATGCATTGGTTGGAGACATCGAACAGGCCATAGACAATGTGACTTTGGTGTGCCAAAATCCCTACGGCAGCATTGCTTCCCGCGGAGTATTCCGCCACGAGAACCCTCTCGCTTCCTCCACATCTCTTCTTCTGGTGCAGTTATCCATCATCACCCTTGTTTCCCAGTTGATCAATCTCTGCTTCAAACCCCTGGGACAGTCCACCCTCGTTTCTCAGATGTTTGGCGGTGTAATATTCGGGCCATCACTTCTGGGGCACAAAAAGCAAATCTCAAACACCATCTTCCCGATAAAAAGCGCTAATGTGTTTGAAACAATTGCAACATTCGGCCTCATGTTCTTCCTTTTTTCAACCGGAGTGAAGCTGAATGCAGGCAGAACGATAAGGCCTGAACGAAGAGCAGTTTCCATTGCACTTTCGATGTTCTTCTTCACCTTGGCACTCCCCTTATGCCTAGCCATGACGATGAGAAAATATGTCGCGATGGACGAGACCCTTAGATCGGCTCTCCCAACTATAACTACATCACAGGTTATATCGAGTTCCCCTGTGGTTGGTTGTTTACTAACCGAGCTCAGGCTAATGAACACGGACCTTGGCCGCCTGGCCCTCTCTGTAACAATGTTTTCCGATGTTATAGGCATCATTATGGTTGGGATGGCCATGGCGATTTTGGGTAACAAGACGAAAACTGCGTTAGTTCCAGTCTTGGAAATAATAACAGCGTTAGCTTTTGTTCTTTCGATTATATACTTGTTCAGGCCAGCAATTCTATGGATGCTCAACCGTATAGAGGAAGGGAAATCTGTCAAGGAGTCGTATACCATTACCATTTTCCTGTTTGTTCTTGTGTGTGGATTTCTCAGTGAGCTCATAAGCCAGCATTACTTGCTGGGACCTCTAGTGCTTGGTTACGTCGTGCCTGCAGGACCGCCTTTGGGATCTGCATTGGTGATGAAGTTGGAAATTTTGGCTACAGGGTTGTTCTACCCAACCTACCTTGCCAATAGCGGGCTGAGGACGAACATCTTCAGGGTTAATCCTCGGTCTACATGGATTATGGGGGTTCTTGTTCTCTTTTCTGCCCTGGTGAAGGTAGGAGCAGTAATGTTACCAGCCACCTATTTTGATGTGCCTACGCATGACGCTTTTGTGCTCGGCATCATCCTTAACGCCAAAGGCATCACTGAACTTGTTATGTACAACATCTGGAAGCAAGGCAAGATTCTGACTGATCAAGAATTCGCGCTGTCCGTGTTCTCGGTGATAGTGATGACAGCAATTGTAACACCTTTGATAAAGTTTTTGTATGATCCTTCAAAGAAATACGCAGCACTGAAAAGAAGTACAATCCAACATTTGAAGCGCGAGTCAGAGCTCCGAATCCTGGCCTGTATCCACAACCAGGACAGTGTTCCCACTCTCATAAACGTCCTGGAAGTAACAAATGCTACAGAAGCGAACCCTGTTGCAGTCATAGGCCTCGTCCTCACCGAGCTTGTGGGGCAAACCAACCCTATTCTCGTGGCGCACCAACCCCGTGACAACTTTGACAACAACACAGCCATGTCCTGCCATATTGTCAAAGCGCTGAGGCAGTACGAGCAGCATAGCCAAGGGCGTGCCTCCCTCCAAGCATTCACTTCCATCTCACAGTATATAACAATGCATGATGACGTTTGCCGCGTTGCAATGGAGAAGAGGGCTAACCTGGTGATCCTGCCGTTTCACAAGCAATGGGCAGTAGATGGCAACATTGGGACGGTGAACCGAGCTCTCCAGTCCATGAACATGAACGTCCTCGAAATGGCGCCTTGCTCTGTTGGAATTCTCGTTGATCGGGGACTGCTAGGAGGGTCGGTATCAGTTCTAACCAACCAGTATACATTCCATGTTGCTGTGATCTTCATTGGTGGTGCAGACGATGCAGAGGCACTAGCCTATGGCGCTCGCATGGCAAGACATCCGAGCGTGGACTTAACAGTTGCCCGGTTCCTCCTCTTTGGTGACGAAAACAGCAAAGACCGGAAGCGGGAAAGTGACCTGGTTGAGGAATACCGGCTAGCTAATGCAGACAATGAGCGGTTTGTTGTGGTGGAAGAGGTGGTAAGAGACGGAGCAAGATTGTCCGCTGTTATCAAATCAATGGTGGACTGTTTTGATTTGATGTTGGTAGGCATGCACCACCAGGACTCCCCGCTTCTTTCGGGGCTCGGTGAGTGGAGTGAGTGCCCGGAGCTCGGAATCATCGGAGATATGCTTGCTTCCCCGGACTTCCAGTGCTCACTTTCTGTGCTAGTGCTGCAGCAGCAGAGAATTGGAGGGAAACCGGTTAATCGGAATCAAGCAGTTGACAGAGAACCGCTAATTCACGAAGCACCCCCTGAGGAAACACTACGAGGATCCTGGACGATTACAGTTAGCGAAAATGGTAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

820

Amino Acids

89.89

Weight (kDa)

6.97

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 57 - 438 1.2e-34 Sodium/hydrogen exchanger, transmembrane
CHX17_2nd PF23256 523 - 627 1.7e-17 Plant cation/H(+) antiporter domain
CHX17_C PF23259 637 - 777 1.7e-16 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013717)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25390
malus_domestica MD01G1160100.v1.1 MD07G1228400.v1.1
prunus_persica Prupe.2G258100_v2.0.a1 Prupe.2G258100_v2.0.a1
pyrus_communis pycom01g17650 pycom07g20680
rosa_chinensis RchiOBHm_Chr1g0371341
rosa_laevigata RLG00000026970
rosa_multiflora Rmu_sc0000809.1_g000038
rosa_roxburghii Rroxscaffold_4G00285780
rosa_rugosa Rorug01G0363200 Rorug01G0363300
rosa_samantha Rh1AG373100 Rh1BG336600 Rh1CG350000 Rh1DG367700
rosa_wichuraiana Rw1G032820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1828
AccBSI CCGCTC 1 cut(s) 2101
AccI GTMKAC 3 cut(s) 839, 1067, 1901
AccII CGCG 5 cut(s) 99, 500, 1265, 1386, 1704
AclWI GGATC 5 cut(s) 967, 1325, 1729, 2415, 2428
AcoI YGGCCR 2 cut(s) 616, 678
AcsI RAATTY 3 cut(s) 984, 1259, 1845
AcuI CTGAAG 1 cut(s) 1033
AcyI GRCGYC 1 cut(s) 1829
AfaI GTAC 3 cut(s) 1220, 1366, 1619
AfeI AGCGCT 2 cut(s) 316, 1608
AgeI ACCGGT 1 cut(s) 2347
AgsI TTSAA 5 cut(s) 202, 329, 369, 1338, 1381
AluBI AGCT 9 cut(s) 382, 592, 749, 889, 1396, 1516, 1793, 2084, 2257
AluI AGCT 9 cut(s) 382, 592, 749, 889, 1396, 1516, 1793, 2084, 2257
Alw21I GWGCWC 7 cut(s) 594, 891, 1176, 1398, 1795, 2259, 2303
Alw26I GTCTC 3 cut(s) 24, 503, 2124
AlwI GGATC 5 cut(s) 967, 1325, 1729, 2415, 2428
Aor51HI AGCGCT 2 cut(s) 316, 1608
ApeKI GCWGC 6 cut(s) 84, 1349, 1624, 2320, 2323, 2326
ApoI RAATTY 3 cut(s) 984, 1259, 1845
AsiGI ACCGGT 1 cut(s) 2347
Asp700I GAANNNNTTC 1 cut(s) 1046
AspLEI GCGC 7 cut(s) 317, 1267, 1386, 1549, 1609, 1831, 1967
AspS9I GGNCC 5 cut(s) 257, 610, 625, 914, 947
AsuC2I CCSGG 3 cut(s) 2008, 2252, 2288
AsuNHI GCTAGC 1 cut(s) 2080
AvaII GGWCC 3 cut(s) 610, 914, 947
AxyI CCTNAGG 1 cut(s) 2403
BaeGI GKGCMC 2 cut(s) 276, 2252
BalI TGGCCA 1 cut(s) 680
BamHI GGATCC 1 cut(s) 2420
BanI GGYRCC 1 cut(s) 1828
BanII GRGCYC 6 cut(s) 594, 891, 1398, 1795, 2232, 2259
BauI CACGAG 2 cut(s) 113, 1541
Bbv12I GWGCWC 7 cut(s) 594, 891, 1176, 1398, 1795, 2259, 2303
BbvCI CCTCAGC 2 cut(s) 1034, 1610
BbvI GCAGC 6 cut(s) 96, 1361, 1636, 2307, 2335, 2338
BccI CCATC 7 cut(s) 170, 268, 305, 496, 670, 1673, 1760
BceAI ACGGC 2 cut(s) 97, 1726
BciVI GTATCC 1 cut(s) 1424
BclI TGATCA 2 cut(s) 186, 1252
BcnI CCSGG 3 cut(s) 2008, 2252, 2288
BcoDI GTCTC 3 cut(s) 24, 503, 2124
BfaI CTAG 6 cut(s) 473, 920, 1868, 1955, 2081, 2315
BfmI CTRYAG 4 cut(s) 942, 993, 1470, 2321
BfoI RGCGCY 4 cut(s) 318, 1610, 1832, 1968
BfuI GTATCC 1 cut(s) 1424
BisI GCNGC 8 cut(s) 85, 619, 1350, 1625, 1702, 2321, 2324, 2327
BlsI GCNGC 8 cut(s) 86, 620, 1351, 1626, 1703, 2322, 2325, 2328
Bme18I GGWCC 3 cut(s) 610, 914, 947
BmgT120I GGNCC 5 cut(s) 257, 610, 625, 914, 947
BmiI GGNNCC 4 cut(s) 915, 1830, 2012, 2422
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 5 cut(s) 669, 786, 1188, 1209, 1933
BmtI GCTAGC 1 cut(s) 2084
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 1781
Bpu10I CCTNAGC 3 cut(s) 593, 1034, 1610
BpuMI CCSGG 3 cut(s) 2008, 2252, 2288
BsaHI GRCGYC 1 cut(s) 1829
BsaI GGTCTC 1 cut(s) 503
BsaWI WCCGGW 3 cut(s) 371, 2043, 2347
BsaXI ACNNNNNCTCC 4 cut(s) 1863, 1893, 2195, 2225
Bse118I RCCGGY 2 cut(s) 2076, 2347
Bse1I ACTGG 5 cut(s) 181, 722, 1798, 1897, 2296
Bse21I CCTNAGG 1 cut(s) 2403
Bse3DI GCAATG 4 cut(s) 87, 426, 1716, 1760
BseGI GGATG 4 cut(s) 681, 801, 1182, 1981
BseMI GCAATG 4 cut(s) 87, 426, 1716, 1760
BseMII CTCAG 6 cut(s) 245, 607, 895, 1025, 1601, 2394
BseNI ACTGG 5 cut(s) 181, 722, 1798, 1897, 2296
BseRI GAGGAG 1 cut(s) 2006
BseSI GKGCMC 2 cut(s) 276, 2252
BseXI GCAGC 6 cut(s) 96, 1361, 1636, 2307, 2335, 2338
BseYI CCCAGC 1 cut(s) 910
BsgI GTGCAG 2 cut(s) 173, 1956
Bsh1236I CGCG 5 cut(s) 99, 500, 1265, 1386, 1704
BshNI GGYRCC 1 cut(s) 1828
BshTI ACCGGT 1 cut(s) 2347
BsiHKAI GWGCWC 7 cut(s) 594, 891, 1176, 1398, 1795, 2259, 2303
BsiSI CCGG 7 cut(s) 372, 2008, 2044, 2077, 2252, 2288, 2348
BslFI GGGAC 4 cut(s) 225, 927, 1792, 1875
BsmAI GTCTC 3 cut(s) 24, 503, 2124
BsmBI CGTCTC 1 cut(s) 2124
BsmFI GGGAC 4 cut(s) 225, 927, 1792, 1875
BsmI GAATGC 2 cut(s) 391, 1655
Bso31I GGTCTC 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 1218
Bsp143I GATC 9 cut(s) 186, 518, 959, 1252, 1330, 1734, 1855, 1920, 2420
Bsp19I CCATGG 1 cut(s) 681
Bsp68I TCGCGA 1 cut(s) 500
BspCNI CTCAG 6 cut(s) 244, 606, 894, 1026, 1602, 2395
BspFNI CGCG 5 cut(s) 99, 500, 1265, 1386, 1704
BspLI GGNNCC 4 cut(s) 915, 1830, 2012, 2422
BspMAI CTGCAG 2 cut(s) 946, 2325
BspOI GCTAGC 1 cut(s) 2084
BspPI GGATC 5 cut(s) 967, 1325, 1729, 2415, 2428
BspQI GCTCTTC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 1828
BspTNI GGTCTC 1 cut(s) 503
BsrBI CCGCTC 1 cut(s) 2101
BsrDI GCAATG 4 cut(s) 87, 426, 1716, 1760
BsrFI RCCGGY 2 cut(s) 2076, 2347
BsrGI TGTACA 1 cut(s) 1218
BsrI ACTGG 5 cut(s) 181, 722, 1798, 1897, 2296
BssAI RCCGGY 2 cut(s) 2076, 2347
BssMI GATC 9 cut(s) 186, 518, 959, 1252, 1330, 1734, 1855, 1920, 2420
BssNAI GTATAC 2 cut(s) 840, 1902
BssNI GRCGYC 1 cut(s) 1829
BssSI CACGAG 2 cut(s) 113, 1541
BssT1I CCWWGG 4 cut(s) 453, 613, 681, 1633
Bst1107I GTATAC 2 cut(s) 840, 1902
Bst2BI CACGAG 2 cut(s) 113, 1541
Bst4CI ACNGT 8 cut(s) 216, 806, 1430, 1674, 1783, 2002, 2174, 2437
Bst6I CTCTTC 4 cut(s) 147, 409, 1712, 2112
BstACI GRCGYC 1 cut(s) 1829
BstAPI GCANNNNNTGC 2 cut(s) 907, 1943
BstAUI TGTACA 1 cut(s) 1218
BstDEI CTNAG 7 cut(s) 231, 515, 593, 881, 1034, 1610, 2403
BstDSI CCRYGG 2 cut(s) 97, 681
BstENI CCTNNNNNAGG 2 cut(s) 1109, 2066
BstF5I GGATG 4 cut(s) 681, 801, 1182, 1981
BstFNI CGCG 5 cut(s) 99, 500, 1265, 1386, 1704
BstH2I RGCGCY 4 cut(s) 318, 1610, 1832, 1968
BstHHI GCGC 7 cut(s) 317, 1267, 1386, 1549, 1609, 1831, 1967
BstKTI GATC 9 cut(s) 189, 521, 962, 1255, 1333, 1737, 1858, 1923, 2423
BstMAI GTCTC 3 cut(s) 24, 503, 2124
BstMBI GATC 9 cut(s) 186, 518, 959, 1252, 1330, 1734, 1855, 1920, 2420
BstNSI RCATGY 1 cut(s) 2200
BstSFI CTRYAG 4 cut(s) 942, 993, 1470, 2321
BstSLI GKGCMC 2 cut(s) 276, 2252
BstUI CGCG 5 cut(s) 99, 500, 1265, 1386, 1704
BstV1I GCAGC 6 cut(s) 96, 1361, 1636, 2307, 2335, 2338
BstX2I RGATCY 2 cut(s) 959, 2420
BstYI RGATCY 2 cut(s) 959, 2420
BstZ17I GTATAC 2 cut(s) 840, 1902
Bsu36I CCTNAGG 1 cut(s) 2403
BsuI GTATCC 1 cut(s) 1424
BtgI CCRYGG 2 cut(s) 97, 681
BtgZI GCGATG 1 cut(s) 515
BtsCI GGATG 4 cut(s) 681, 801, 1182, 1981
BtsIMutI CAGTG 5 cut(s) 889, 1203, 1352, 1435, 2303
BtuMI TCGCGA 1 cut(s) 500
CfoI GCGC 7 cut(s) 317, 1267, 1386, 1549, 1609, 1831, 1967
Cfr10I RCCGGY 2 cut(s) 2076, 2347
Cfr13I GGNCC 5 cut(s) 257, 610, 625, 914, 947
Cfr42I CCGCGG 1 cut(s) 100
CseI GACGC 1 cut(s) 1172
CsiI ACCWGGT 2 cut(s) 1728, 2061
Csp6I GTAC 3 cut(s) 1219, 1365, 1618
CspAI ACCGGT 1 cut(s) 2347
CspCI CAANNNNNGTGG 2 cut(s) 1126, 1161
CviQI GTAC 3 cut(s) 1219, 1365, 1618
DdeI CTNAG 7 cut(s) 231, 515, 593, 881, 1034, 1610, 2403
DinI GGCGCC 1 cut(s) 1830
DpnI GATC 9 cut(s) 188, 520, 961, 1254, 1332, 1736, 1857, 1922, 2422
DpnII GATC 9 cut(s) 186, 518, 959, 1252, 1330, 1734, 1855, 1920, 2420
EaeI YGGCCR 2 cut(s) 616, 678
Eam1104I CTCTTC 4 cut(s) 147, 409, 1712, 2112
EarI CTCTTC 4 cut(s) 147, 409, 1712, 2112
EciI GGCGGA 1 cut(s) 98
Ecl136II GAGCTC 5 cut(s) 592, 889, 1396, 1793, 2257
Eco130I CCWWGG 4 cut(s) 453, 613, 681, 1633
Eco147I AGGCCT 2 cut(s) 406, 1500
Eco24I GRGCYC 6 cut(s) 594, 891, 1398, 1795, 2232, 2259
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 3 cut(s) 610, 914, 947
Eco47III AGCGCT 2 cut(s) 316, 1608
Eco53kI GAGCTC 5 cut(s) 592, 889, 1396, 1793, 2257
Eco57I CTGAAG 1 cut(s) 1033
Eco81I CCTNAGG 1 cut(s) 2403
EcoICRI GAGCTC 5 cut(s) 592, 889, 1396, 1793, 2257
EcoNI CCTNNNNNAGG 2 cut(s) 1109, 2066
EcoO109I RGGNCCY 1 cut(s) 914
EcoRI GAATTC 2 cut(s) 1259, 1845
EcoT14I CCWWGG 4 cut(s) 453, 613, 681, 1633
EcoT22I ATGCAT 2 cut(s) 22, 1689
EcoT38I GRGCYC 6 cut(s) 594, 891, 1398, 1795, 2232, 2259
EgeI GGCGCC 1 cut(s) 1830
EheI GGCGCC 1 cut(s) 1830
ErhI CCWWGG 4 cut(s) 453, 613, 681, 1633
Esp3I CGTCTC 1 cut(s) 2124
FaqI GGGAC 4 cut(s) 225, 927, 1792, 1875
FauI CCCGC 4 cut(s) 104, 1022, 2043, 2223
FbaI TGATCA 2 cut(s) 186, 1252
FblI GTMKAC 3 cut(s) 839, 1067, 1901
Fnu4HI GCNGC 8 cut(s) 85, 619, 1350, 1625, 1702, 2321, 2324, 2327
FokI GGATG 4 cut(s) 688, 808, 1169, 1968
FriOI GRGCYC 6 cut(s) 594, 891, 1398, 1795, 2232, 2259
Fsp4HI GCNGC 8 cut(s) 85, 619, 1350, 1625, 1702, 2321, 2324, 2327
FspBI CTAG 6 cut(s) 473, 920, 1868, 1955, 2081, 2315
GlaI GCGC 7 cut(s) 316, 1266, 1385, 1548, 1608, 1830, 1966
GluI GCNGC 8 cut(s) 85, 619, 1350, 1625, 1702, 2321, 2324, 2327
GsaI CCCAGC 1 cut(s) 914
GsuI CTGGAG 1 cut(s) 1781
HaeII RGCGCY 4 cut(s) 318, 1610, 1832, 1968
HapII CCGG 7 cut(s) 372, 2008, 2044, 2077, 2252, 2288, 2348
HgaI GACGC 1 cut(s) 1172
HhaI GCGC 7 cut(s) 317, 1267, 1386, 1549, 1609, 1831, 1967
Hin1I GRCGYC 1 cut(s) 1829
Hin6I GCGC 7 cut(s) 315, 1265, 1384, 1547, 1607, 1829, 1965
HinP1I GCGC 7 cut(s) 315, 1265, 1384, 1547, 1607, 1829, 1965
HincII GTYRAC 1 cut(s) 2371
HindII GTYRAC 1 cut(s) 2371
HinfI GANTC 7 cut(s) 833, 1243, 1388, 1401, 2210, 2262, 2359
HpaII CCGG 7 cut(s) 372, 2008, 2044, 2077, 2252, 2288, 2348
Hpy166II GTNNAC 9 cut(s) 219, 581, 840, 1068, 1786, 1902, 1993, 2170, 2371
Hpy188I TCNGA 9 cut(s) 234, 649, 1248, 1393, 1400, 1986, 2261, 2270, 2358
Hpy188III TCNNGA 5 cut(s) 304, 499, 1228, 1256, 2390
Hpy8I GTNNAC 9 cut(s) 219, 581, 840, 1068, 1786, 1902, 1993, 2170, 2371
Hpy99I CGWCG 1 cut(s) 938
HpyAV CCTTC 3 cut(s) 809, 1105, 1344
HpyCH4III ACNGT 8 cut(s) 216, 806, 1430, 1674, 1783, 2002, 2174, 2437
HpyCH4IV ACGT 4 cut(s) 933, 1449, 1695, 1815
HpyF3I CTNAG 7 cut(s) 231, 515, 593, 881, 1034, 1610, 2403
HpySE526I ACGT 4 cut(s) 933, 1449, 1695, 1815
Hsp92I GRCGYC 1 cut(s) 1829
HspAI GCGC 7 cut(s) 315, 1265, 1384, 1547, 1607, 1829, 1965
KasI GGCGCC 1 cut(s) 1828
Ksp22I TGATCA 2 cut(s) 186, 1252
KspI CCGCGG 1 cut(s) 100
Kzo9I GATC 9 cut(s) 186, 518, 959, 1252, 1330, 1734, 1855, 1920, 2420
LguI GCTCTTC 1 cut(s) 409
LmnI GCTCC 4 cut(s) 1118, 1401, 2135, 2254
Lsp1109I GCAGC 6 cut(s) 96, 1361, 1636, 2307, 2335, 2338
LweI GCATC 5 cut(s) 669, 786, 1188, 1209, 1933
MabI ACCWGGT 2 cut(s) 1728, 2061
MaeI CTAG 6 cut(s) 473, 920, 1868, 1955, 2081, 2315
MaeII ACGT 4 cut(s) 933, 1449, 1695, 1815
MalI GATC 9 cut(s) 188, 520, 961, 1254, 1332, 1736, 1857, 1922, 2422
MbiI CCGCTC 1 cut(s) 2101
MboI GATC 9 cut(s) 186, 518, 959, 1252, 1330, 1734, 1855, 1920, 2420
MfeI CAATTG 2 cut(s) 333, 1299
MflI RGATCY 2 cut(s) 959, 2420
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 8 cut(s) 333, 786, 984, 1259, 1299, 1845, 2334, 2385
MluNI TGGCCA 1 cut(s) 680
Mly113I GGCGCC 1 cut(s) 1829
MlyI GAGTC 3 cut(s) 842, 1397, 2204
MmeI TCCRAC 4 cut(s) 7, 960, 1396, 1822
Mox20I TGGCCA 1 cut(s) 680
Mph1103I ATGCAT 2 cut(s) 22, 1689
MroXI GAANNNNTTC 1 cut(s) 1046
MscI TGGCCA 1 cut(s) 680
MseI TTAA 5 cut(s) 8, 1056, 1188, 1997, 2352
MslI CAYNNNNRTG 4 cut(s) 482, 665, 1583, 1808
Msp20I TGGCCA 1 cut(s) 680
MspA1I CMGCKG 2 cut(s) 99, 2150
MspI CCGG 7 cut(s) 372, 2008, 2044, 2077, 2252, 2288, 2348
MunI CAATTG 2 cut(s) 333, 1299
Mva1269I GAATGC 2 cut(s) 391, 1655
MvnI CGCG 5 cut(s) 99, 500, 1265, 1386, 1704
NarI GGCGCC 1 cut(s) 1829
NciI CCSGG 3 cut(s) 2008, 2252, 2288
NcoI CCATGG 1 cut(s) 681
NdeII GATC 9 cut(s) 186, 518, 959, 1252, 1330, 1734, 1855, 1920, 2420
NheI GCTAGC 1 cut(s) 2080
NlaIV GGNNCC 4 cut(s) 915, 1830, 2012, 2422
NmeAIII GCCGAG 1 cut(s) 1155
NmuCI GTSAC 4 cut(s) 55, 1559, 2024, 2057
NruI TCGCGA 1 cut(s) 500
NsiI ATGCAT 2 cut(s) 22, 1689
NspI RCATGY 1 cut(s) 2200
PaeI GCATGC 1 cut(s) 2200
PasI CCCWGGG 1 cut(s) 208
PceI AGGCCT 2 cut(s) 406, 1500
PciSI GCTCTTC 1 cut(s) 409
PcsI WCGNNNNNNNCGW 5 cut(s) 504, 710, 1269, 1509, 1701
PctI GAATGC 2 cut(s) 391, 1655
PdmI GAANNNNTTC 1 cut(s) 1046
PfeI GAWTC 4 cut(s) 1243, 1401, 2262, 2359
PfoI TCCNGGA 2 cut(s) 1452, 2423
PinAI ACCGGT 1 cut(s) 2347
PkrI GCNGC 8 cut(s) 86, 620, 1351, 1626, 1703, 2322, 2325, 2328
PleI GAGTC 3 cut(s) 841, 1396, 2204
PluTI GGCGCC 1 cut(s) 1832
PpsI GAGTC 3 cut(s) 841, 1396, 2204
PpuMI RGGWCCY 1 cut(s) 914
Psp124BI GAGCTC 5 cut(s) 594, 891, 1398, 1795, 2259
Psp5II RGGWCCY 1 cut(s) 914
PspFI CCCAGC 1 cut(s) 910
PspN4I GGNNCC 4 cut(s) 915, 1830, 2012, 2422
PspPI GGNCC 5 cut(s) 257, 610, 625, 914, 947
PspPPI RGGWCCY 1 cut(s) 914
PstI CTGCAG 2 cut(s) 946, 2325
PsuI RGATCY 2 cut(s) 959, 2420
RruI TCGCGA 1 cut(s) 500
RsaI GTAC 3 cut(s) 1220, 1366, 1619
RsaNI GTAC 3 cut(s) 1219, 1365, 1618
RseI CAYNNNNRTG 4 cut(s) 482, 665, 1583, 1808
SacI GAGCTC 5 cut(s) 594, 891, 1398, 1795, 2259
SacII CCGCGG 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 409
SaqAI TTAA 5 cut(s) 8, 1056, 1188, 1997, 2352
SatI GCNGC 8 cut(s) 85, 619, 1350, 1625, 1702, 2321, 2324, 2327
Sau3AI GATC 9 cut(s) 186, 518, 959, 1252, 1330, 1734, 1855, 1920, 2420
Sau96I GGNCC 5 cut(s) 257, 610, 625, 914, 947
SbfI CCTGCAGG 1 cut(s) 946
SchI GAGTC 3 cut(s) 842, 1397, 2204
SdaI CCTGCAGG 1 cut(s) 946
SexAI ACCWGGT 2 cut(s) 1728, 2061
SfaNI GCATC 5 cut(s) 669, 786, 1188, 1209, 1933
SfcI CTRYAG 4 cut(s) 942, 993, 1470, 2321
SfoI GGCGCC 1 cut(s) 1830
Sfr303I CCGCGG 1 cut(s) 100
SgrBI CCGCGG 1 cut(s) 100
SinI GGWCC 3 cut(s) 610, 914, 947
SmiMI CAYNNNNRTG 4 cut(s) 482, 665, 1583, 1808
SphI GCATGC 1 cut(s) 2200
Sse8387I CCTGCAGG 1 cut(s) 946
Sse9I AATT 8 cut(s) 333, 786, 984, 1259, 1299, 1845, 2334, 2385
SseBI AGGCCT 2 cut(s) 406, 1500
SspDI GGCGCC 1 cut(s) 1828
SspI AATATT 1 cut(s) 252
SspMI CTAG 6 cut(s) 473, 920, 1868, 1955, 2081, 2315
SstI GAGCTC 5 cut(s) 594, 891, 1398, 1795, 2259
StuI AGGCCT 2 cut(s) 406, 1500
StyI CCWWGG 4 cut(s) 453, 613, 681, 1633
TaaI ACNGT 8 cut(s) 216, 806, 1430, 1674, 1783, 2002, 2174, 2437
TaiI ACGT 4 cut(s) 936, 1452, 1698, 1818
TaqI TCGA 5 cut(s) 36, 437, 557, 761, 1821
TaqII GACCGA 1 cut(s) 1053
TasI AATT 8 cut(s) 333, 786, 984, 1259, 1299, 1845, 2334, 2385
TatI WGTACW 2 cut(s) 1218, 1364
TauI GCSGC 2 cut(s) 621, 1704
TfiI GAWTC 4 cut(s) 1243, 1401, 2262, 2359
Tru1I TTAA 5 cut(s) 8, 1056, 1188, 1997, 2352
Tru9I TTAA 5 cut(s) 8, 1056, 1188, 1997, 2352
TscAI CASTG 5 cut(s) 889, 1210, 1359, 1435, 2303
TseFI GTSAC 4 cut(s) 55, 1559, 2024, 2057
TseI GCWGC 6 cut(s) 84, 1349, 1624, 2320, 2323, 2326
Tsp45I GTSAC 4 cut(s) 55, 1559, 2024, 2057
TspDTI ATGAA 5 cut(s) 617, 989, 1820, 1826, 1915
TspGWI ACGGA 3 cut(s) 623, 1261, 2148
TspRI CASTG 5 cut(s) 889, 1210, 1359, 1435, 2303
VpaK11BI GGWCC 3 cut(s) 610, 914, 947
XagI CCTNNNNNAGG 2 cut(s) 1109, 2066
XapI RAATTY 3 cut(s) 984, 1259, 1845
XceI RCATGY 1 cut(s) 2200
XcmI CCANNNNNNNNNTGG 2 cut(s) 688, 789
XmiI GTMKAC 3 cut(s) 839, 1067, 1901
XmnI GAANNNNTTC 1 cut(s) 1046
XspI CTAG 6 cut(s) 473, 920, 1868, 1955, 2081, 2315
Zsp2I ATGCAT 2 cut(s) 22, 1689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.