Rorug01G0363200

cation H( ) antiporter 15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013717
Physical Location & Seq
Reverse (-)
47844004 .. 47844657
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0363200.1

Sequence Viewer

Length: 624 bp
ATGGACAGGGTGATCTACCTTCAGTTGTCGGCCGGGCAAAAGCTTTTGTGGTATGCGATCGGAGAACAAGAGGCTCAAAGTGATGAAGAAATTGATAGCATCAGGAAACTGGATCTTCCTCAATTGGATTACCAGCTGGTTAAATTCAGCGTCGCAGTCGTCAATTCCCGCCTCTACCTCATGGGTGGAACCAAAACCAAAATCAAGGGATATTTCCAAACCGAAATGGGTAAGTGCAGCACTCAGAACCTCGACGGTTATCTCTCCTTGGATTTGCTAGCTGCTTCCCCTAATTGGCTCGCATCCGATGGTGGCATGGACTACCCGGCCTACATTCAACACTCGGCGGCCGTCTCCGAACAAGACGGGTCCATTTATATGTTGGGTTGTGTGCAGGGTCGGTTCATGTGCTCTAAACCCGATGATGCTGCCGCCACCTGGGAAAAAGTCCCGGCTTTCTTTGACATTTTGGCCACGGAGGAAGGTCGCCCTTTCTCCTCATTTGCTAGACTACTTGCTCTGACGGAGAACAAGCTTTTCGGCTACTGCGCCACTAACCTGATTTGCTATGATTTGGTGATTCGAGAGTGGAAGCTTATAGACAAAGCTTACAGAGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

207

Amino Acids

23.22

Weight (kDa)

4.87

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013717)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25390
malus_domestica MD01G1160100.v1.1 MD07G1228400.v1.1
prunus_persica Prupe.2G258100_v2.0.a1 Prupe.2G258100_v2.0.a1
pyrus_communis pycom01g17650 pycom07g20680
rosa_chinensis RchiOBHm_Chr1g0371341
rosa_laevigata RLG00000026970
rosa_multiflora Rmu_sc0000809.1_g000038
rosa_roxburghii Rroxscaffold_4G00285780
rosa_rugosa Rorug01G0363200 Rorug01G0363300
rosa_samantha Rh1AG373100 Rh1BG336600 Rh1CG350000 Rh1DG367700
rosa_wichuraiana Rw1G032820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 169, 347, 432
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 3 cut(s) 30, 348, 471
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 294, 438
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 6 cut(s) 43, 136, 281, 535, 595, 608
AluI AGCT 6 cut(s) 43, 136, 281, 535, 595, 608
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 1 cut(s) 120
AoxI GGCC 4 cut(s) 30, 327, 348, 471
ApeKI GCWGC 3 cut(s) 237, 281, 428
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 1 cut(s) 369
AsuC2I CCSGG 3 cut(s) 34, 326, 452
AsuHPI GGTGA 2 cut(s) 22, 589
AsuNHI GCTAGC 1 cut(s) 277
AvaII GGWCC 1 cut(s) 369
BalI TGGCCA 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 413
BbvI GCAGC 3 cut(s) 249, 268, 415
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 439
BcnI CCSGG 3 cut(s) 34, 326, 452
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 2 cut(s) 278, 507
BisI GCNGC 5 cut(s) 238, 282, 348, 429, 432
BlsI GCNGC 5 cut(s) 239, 283, 349, 430, 433
Bme1390I CCNGG 4 cut(s) 34, 326, 439, 452
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 2 cut(s) 190, 370
BmrFI CCNGG 4 cut(s) 34, 326, 439, 452
BmsI GCATC 3 cut(s) 108, 311, 415
BmtI GCTAGC 1 cut(s) 281
BpuMI CCSGG 3 cut(s) 34, 326, 452
BsaJI CCNNGG 3 cut(s) 267, 438, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 438
Bse1I ACTGG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 3 cut(s) 267, 438, 474
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 294, 438
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 487
BseX3I CGGCCG 2 cut(s) 30, 348
BseXI GCAGC 3 cut(s) 249, 268, 415
BsgI GTGCAG 2 cut(s) 256, 413
Bsh1285I CGRYCG 3 cut(s) 33, 60, 351
BshFI GGCC 4 cut(s) 32, 329, 350, 473
BsiEI CGRYCG 3 cut(s) 33, 60, 351
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 3 cut(s) 33, 326, 452
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 294, 438
BsmAI GTCTC 1 cut(s) 358
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 4 cut(s) 32, 329, 350, 473
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 3 cut(s) 12, 57, 112
BspACI CCGC 3 cut(s) 169, 347, 432
BspANI GGCC 4 cut(s) 32, 329, 350, 473
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 190, 370
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 267, 438, 474
BssMI GATC 3 cut(s) 12, 57, 112
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 279, 300
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 302
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 3 cut(s) 15, 60, 115
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 3 cut(s) 12, 57, 112
BstMCI CGRYCG 3 cut(s) 33, 60, 351
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 4 cut(s) 32, 324, 437, 450
BstV1I GCAGC 3 cut(s) 249, 268, 415
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BstZI CGGCCG 2 cut(s) 30, 348
BsuRI GGCC 4 cut(s) 32, 329, 350, 473
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 279, 300
CfoI GCGC 1 cut(s) 551
Cfr13I GGNCC 1 cut(s) 369
CseI GACGC 1 cut(s) 139
CviAII CATG 3 cut(s) 181, 316, 406
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 14, 59, 114
DpnII GATC 3 cut(s) 12, 57, 112
EaeI YGGCCR 3 cut(s) 30, 348, 471
EagI CGGCCG 2 cut(s) 30, 348
EclXI CGGCCG 2 cut(s) 30, 348
Eco130I CCWWGG 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 369
Eco52I CGGCCG 2 cut(s) 30, 348
Eco57I CTGAAG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 184, 319, 409
FaiI YATR 8 cut(s) 54, 182, 317, 378, 380, 407, 570, 599
FaqI GGGAC 1 cut(s) 434
FatI CATG 3 cut(s) 180, 315, 405
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 5 cut(s) 238, 282, 348, 429, 432
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 238, 282, 348, 429, 432
FspBI CTAG 2 cut(s) 278, 507
GlaI GCGC 1 cut(s) 550
GluI GCNGC 5 cut(s) 238, 282, 348, 429, 432
HaeIII GGCC 4 cut(s) 32, 329, 350, 473
HapII CCGG 3 cut(s) 33, 326, 452
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 551
Hin1II CATG 3 cut(s) 184, 319, 409
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HindIII AAGCTT 4 cut(s) 41, 533, 593, 606
HinfI GANTC 1 cut(s) 580
HpaII CCGG 3 cut(s) 33, 326, 452
HphI GGTGA 2 cut(s) 22, 589
Hpy188I TCNGA 5 cut(s) 62, 246, 307, 358, 522
Hpy188III TCNNGA 2 cut(s) 103, 584
Hpy99I CGWCG 2 cut(s) 155, 257
HpyAV CCTTC 2 cut(s) 29, 476
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 237, 394
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 3 cut(s) 184, 319, 409
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 3 cut(s) 12, 57, 112
Lsp1109I GCAGC 3 cut(s) 249, 268, 415
LweI GCATC 3 cut(s) 108, 311, 415
MaeI CTAG 2 cut(s) 278, 507
MalI GATC 3 cut(s) 14, 59, 114
MboI GATC 3 cut(s) 12, 57, 112
MboII GAAGA 2 cut(s) 98, 107
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 413
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 5 cut(s) 90, 122, 143, 163, 292
MluNI TGGCCA 1 cut(s) 473
MnlI CCTC 8 cut(s) 64, 129, 182, 188, 260, 472, 508, 608
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 3 cut(s) 33, 326, 452
MspR9I CCNGG 4 cut(s) 34, 326, 439, 452
MunI CAATTG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 439
NciI CCSGG 3 cut(s) 34, 326, 452
NdeII GATC 3 cut(s) 12, 57, 112
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 3 cut(s) 184, 319, 409
NlaIV GGNNCC 2 cut(s) 190, 370
NmeAIII GCCGAG 1 cut(s) 323
PfeI GAWTC 1 cut(s) 580
PkrI GCNGC 5 cut(s) 239, 283, 349, 430, 433
Ple19I CGATCG 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 190, 370
PspPI GGNCC 1 cut(s) 369
PsuI RGATCY 1 cut(s) 112
PvuI CGATCG 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 5 cut(s) 238, 282, 348, 429, 432
Sau3AI GATC 3 cut(s) 12, 57, 112
Sau96I GGNCC 1 cut(s) 369
ScrFI CCNGG 4 cut(s) 34, 326, 439, 452
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 3 cut(s) 108, 311, 415
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 5 cut(s) 90, 122, 143, 163, 292
SsiI CCGC 3 cut(s) 169, 347, 432
SspMI CTAG 2 cut(s) 278, 507
StyD4I CCNGG 4 cut(s) 32, 324, 437, 450
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 252, 583
TasI AATT 5 cut(s) 90, 122, 143, 163, 292
TauI GCSGC 2 cut(s) 350, 434
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 3 cut(s) 237, 281, 428
TspDTI ATGAA 2 cut(s) 99, 394
TspGWI ACGGA 2 cut(s) 491, 539
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 2 cut(s) 278, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.