U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25160 AT5G61550 AT5G61550 AT5G61550 AT5G61550 |
| fragaria_vesca | FvH4_7g27030 |
| malus_domestica | MD01G1177900.v1.1 MD07G1249700.v1.1 |
| prunus_persica | Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 |
| pyrus_communis | pycom01g18870 pycom07g22310 |
| rosa_chinensis | RchiOBHm_Chr1g0373831 |
| rosa_laevigata | RLG00000026802 |
| rosa_multiflora | Rmu_sc0013735.1_g000010 Rmu_ssc0000206.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00283970 |
| rosa_rugosa | Rorug01G0379500 |
| rosa_samantha | Rh1AG389100 Rh1BG353300 Rh1CG366600 Rh1DG384300 |
| rosa_wichuraiana | Rw1G034610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2014 |
| Acc36I | ACCTGC | 1 cut(s) | 1949 |
| AccB1I | GGYRCC | 1 cut(s) | 410 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 422 |
| AccI | GTMKAC | 1 cut(s) | 1491 |
| AccII | CGCG | 2 cut(s) | 531, 639 |
| AccIII | TCCGGA | 1 cut(s) | 127 |
| AciI | CCGC | 5 cut(s) | 639, 691, 1435, 2190, 2212 |
| AclWI | GGATC | 3 cut(s) | 789, 1299, 1727 |
| AcoI | YGGCCR | 3 cut(s) | 164, 1967, 2187 |
| AcsI | RAATTY | 5 cut(s) | 34, 742, 1039, 1930, 2104 |
| AcuI | CTGAAG | 1 cut(s) | 804 |
| AfaI | GTAC | 7 cut(s) | 222, 333, 528, 733, 1316, 1499, 1546 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 422, 778, 1012, 1958 |
| AflII | CTTAAG | 1 cut(s) | 2159 |
| AflIII | ACRYGT | 2 cut(s) | 581, 609 |
| AhlI | ACTAGT | 1 cut(s) | 334 |
| AjiI | CACGTC | 2 cut(s) | 612, 844 |
| AjnI | CCWGG | 1 cut(s) | 894 |
| Alw26I | GTCTC | 3 cut(s) | 956, 1973, 2025 |
| AlwI | GGATC | 3 cut(s) | 789, 1299, 1727 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1769 |
| Ama87I | CYCGRG | 1 cut(s) | 1796 |
| Aor13HI | TCCGGA | 1 cut(s) | 127 |
| AoxI | GGCC | 5 cut(s) | 164, 1708, 1766, 1967, 2187 |
| ApeKI | GCWGC | 5 cut(s) | 239, 688, 1355, 1531, 2010 |
| ApoI | RAATTY | 5 cut(s) | 34, 742, 1039, 1930, 2104 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1927, 1959 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2231 |
| AspLEI | GCGC | 3 cut(s) | 533, 832, 2015 |
| AspS9I | GGNCC | 3 cut(s) | 1223, 1766, 1948 |
| AsuHPI | GGTGA | 4 cut(s) | 33, 166, 852, 1867 |
| AsuII | TTCGAA | 1 cut(s) | 2235 |
| AvaI | CYCGRG | 1 cut(s) | 1796 |
| AvaII | GGWCC | 2 cut(s) | 1223, 1948 |
| BaeGI | GKGCMC | 1 cut(s) | 415 |
| BalI | TGGCCA | 1 cut(s) | 1969 |
| BanI | GGYRCC | 1 cut(s) | 410 |
| BanII | GRGCYC | 1 cut(s) | 112 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 781, 813 |
| BauI | CACGAG | 1 cut(s) | 420 |
| BbsI | GAAGAC | 1 cut(s) | 2336 |
| BbvI | GCAGC | 5 cut(s) | 226, 700, 1367, 1518, 1997 |
| BccI | CCATC | 6 cut(s) | 424, 764, 1446, 1650, 2164, 2189 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2203, 2237 |
| BciT130I | CCWGG | 1 cut(s) | 896 |
| BclI | TGATCA | 2 cut(s) | 1474, 1675 |
| BcoDI | GTCTC | 3 cut(s) | 956, 1973, 2025 |
| BcuI | ACTAGT | 1 cut(s) | 334 |
| BfaI | CTAG | 6 cut(s) | 309, 335, 615, 765, 978, 1487 |
| BfmI | CTRYAG | 3 cut(s) | 1353, 1377, 1532 |
| BfoI | RGCGCY | 1 cut(s) | 833 |
| BfrI | CTTAAG | 1 cut(s) | 2159 |
| BfuAI | ACCTGC | 1 cut(s) | 1949 |
| BglII | AGATCT | 1 cut(s) | 1419 |
| BisI | GCNGC | 7 cut(s) | 240, 640, 689, 1356, 1532, 2011, 2190 |
| BlsI | GCNGC | 7 cut(s) | 241, 641, 690, 1357, 1533, 2012, 2191 |
| Bme1390I | CCNGG | 1 cut(s) | 896 |
| Bme18I | GGWCC | 2 cut(s) | 1223, 1948 |
| BmeT110I | CYCGRG | 1 cut(s) | 1796 |
| BmgBI | CACGTC | 2 cut(s) | 612, 844 |
| BmgT120I | GGNCC | 3 cut(s) | 1223, 1766, 1948 |
| BmiI | GGNNCC | 3 cut(s) | 412, 1574, 1950 |
| BmrFI | CCNGG | 1 cut(s) | 896 |
| BmsI | GCATC | 7 cut(s) | 306, 529, 542, 758, 961, 1158, 1174 |
| BpiI | GAAGAC | 1 cut(s) | 2336 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1580, 1612 |
| BpmI | CTGGAG | 2 cut(s) | 42, 917 |
| Bpu14I | TTCGAA | 1 cut(s) | 2235 |
| BpuEI | CTTGAG | 5 cut(s) | 1013, 1280, 1436, 1444, 2090 |
| BsaBI | GATNNNNATC | 1 cut(s) | 772 |
| BsaJI | CCNNGG | 3 cut(s) | 1188, 1287, 1559 |
| BsaWI | WCCGGW | 4 cut(s) | 127, 176, 862, 1005 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 15, 45, 437, 467, 1511, 1541 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 422, 778, 1012, 1958 |
| Bse118I | RCCGGY | 1 cut(s) | 1657 |
| Bse1I | ACTGG | 3 cut(s) | 25, 808, 1746 |
| Bse3DI | GCAATG | 3 cut(s) | 63, 954, 2270 |
| Bse8I | GATNNNNATC | 1 cut(s) | 772 |
| BseAI | TCCGGA | 1 cut(s) | 127 |
| BseBI | CCWGG | 1 cut(s) | 896 |
| BseDI | CCNNGG | 3 cut(s) | 1188, 1287, 1559 |
| BseJI | GATNNNNATC | 1 cut(s) | 772 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 422, 778, 1012, 1958 |
| BseMI | GCAATG | 3 cut(s) | 63, 954, 2270 |
| BseMII | CTCAG | 6 cut(s) | 66, 480, 534, 791, 852, 937 |
| BseNI | ACTGG | 3 cut(s) | 25, 808, 1746 |
| BseRI | GAGGAG | 4 cut(s) | 36, 445, 1064, 2103 |
| BseSI | GKGCMC | 1 cut(s) | 415 |
| BseXI | GCAGC | 5 cut(s) | 226, 700, 1367, 1518, 1997 |
| BsgI | GTGCAG | 1 cut(s) | 457 |
| Bsh1236I | CGCG | 2 cut(s) | 531, 639 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2223 |
| BshFI | GGCC | 5 cut(s) | 166, 1710, 1768, 1969, 2189 |
| BshNI | GGYRCC | 1 cut(s) | 410 |
| BsiEI | CGRYCG | 1 cut(s) | 2223 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1796 |
| BsiSI | CCGG | 6 cut(s) | 128, 163, 177, 863, 1006, 1658 |
| BsiWI | CGTACG | 1 cut(s) | 1314 |
| BslFI | GGGAC | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 422, 778, 1012, 1958 |
| BsmAI | GTCTC | 3 cut(s) | 956, 1973, 2025 |
| BsmFI | GGGAC | 1 cut(s) | 92 |
| BsnI | GGCC | 5 cut(s) | 166, 1710, 1768, 1969, 2189 |
| BsoBI | CYCGRG | 1 cut(s) | 1796 |
| Bsp119I | TTCGAA | 1 cut(s) | 2235 |
| Bsp1286I | GDGCHC | 2 cut(s) | 112, 415 |
| Bsp13I | TCCGGA | 1 cut(s) | 127 |
| BspACI | CCGC | 5 cut(s) | 639, 691, 1435, 2190, 2212 |
| BspANI | GGCC | 5 cut(s) | 166, 1710, 1768, 1969, 2189 |
| BspCNI | CTCAG | 6 cut(s) | 65, 479, 535, 790, 851, 936 |
| BspEI | TCCGGA | 1 cut(s) | 127 |
| BspFNI | CGCG | 2 cut(s) | 531, 639 |
| BspLI | GGNNCC | 3 cut(s) | 412, 1574, 1950 |
| BspMAI | CTGCAG | 2 cut(s) | 1357, 1536 |
| BspMI | ACCTGC | 1 cut(s) | 1949 |
| BspPI | GGATC | 3 cut(s) | 789, 1299, 1727 |
| BspT104I | TTCGAA | 1 cut(s) | 2235 |
| BspT107I | GGYRCC | 1 cut(s) | 410 |
| BspTI | CTTAAG | 1 cut(s) | 2159 |
| BsrDI | GCAATG | 3 cut(s) | 63, 954, 2270 |
| BsrFI | RCCGGY | 1 cut(s) | 1657 |
| BsrI | ACTGG | 3 cut(s) | 25, 808, 1746 |
| BssAI | RCCGGY | 1 cut(s) | 1657 |
| BssECI | CCNNGG | 3 cut(s) | 1188, 1287, 1559 |
| BssSI | CACGAG | 1 cut(s) | 420 |
| BssT1I | CCWWGG | 2 cut(s) | 1188, 1559 |
| Bst2BI | CACGAG | 1 cut(s) | 420 |
| Bst2UI | CCWGG | 1 cut(s) | 896 |
| Bst4CI | ACNGT | 6 cut(s) | 493, 575, 1324, 1481, 1511, 1544 |
| Bst6I | CTCTTC | 4 cut(s) | 366, 1971, 2232, 2310 |
| BstAFI | CTTAAG | 1 cut(s) | 2159 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 539, 1177 |
| BstBI | TTCGAA | 1 cut(s) | 2235 |
| BstC8I | GCNNGC | 5 cut(s) | 267, 271, 472, 882, 1173 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1956 |
| BstFNI | CGCG | 2 cut(s) | 531, 639 |
| BstH2I | RGCGCY | 1 cut(s) | 833 |
| BstHHI | GCGC | 3 cut(s) | 533, 832, 2015 |
| BstMAI | GTCTC | 3 cut(s) | 956, 1973, 2025 |
| BstMCI | CGRYCG | 1 cut(s) | 2223 |
| BstNI | CCWGG | 1 cut(s) | 896 |
| BstNSI | RCATGY | 3 cut(s) | 585, 932, 1470 |
| BstSCI | CCNGG | 1 cut(s) | 894 |
| BstSFI | CTRYAG | 3 cut(s) | 1353, 1377, 1532 |
| BstSLI | GKGCMC | 1 cut(s) | 415 |
| BstUI | CGCG | 2 cut(s) | 531, 639 |
| BstV1I | GCAGC | 5 cut(s) | 226, 700, 1367, 1518, 1997 |
| BstV2I | GAAGAC | 1 cut(s) | 2336 |
| BstX2I | RGATCY | 4 cut(s) | 781, 1291, 1419, 1732 |
| BstYI | RGATCY | 4 cut(s) | 781, 1291, 1419, 1732 |
| BsuRI | GGCC | 5 cut(s) | 166, 1710, 1768, 1969, 2189 |
| BtgZI | GCGATG | 1 cut(s) | 861 |
| BtrI | CACGTC | 2 cut(s) | 612, 844 |
| BtsI | GCAGTG | 1 cut(s) | 1365 |
| BtsIMutI | CAGTG | 3 cut(s) | 79, 580, 1365 |
| BveI | ACCTGC | 1 cut(s) | 1949 |
| Cac8I | GCNNGC | 5 cut(s) | 267, 271, 472, 882, 1173 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1769 |
| CfoI | GCGC | 3 cut(s) | 533, 832, 2015 |
| Cfr10I | RCCGGY | 1 cut(s) | 1657 |
| Cfr13I | GGNCC | 3 cut(s) | 1223, 1766, 1948 |
| CseI | GACGC | 2 cut(s) | 547, 2034 |
| Csp6I | GTAC | 7 cut(s) | 221, 332, 527, 732, 1315, 1498, 1545 |
| CviQI | GTAC | 7 cut(s) | 221, 332, 527, 732, 1315, 1498, 1545 |
| DraI | TTTAAA | 2 cut(s) | 433, 996 |
| EaeI | YGGCCR | 3 cut(s) | 164, 1967, 2187 |
| Eam1104I | CTCTTC | 4 cut(s) | 366, 1971, 2232, 2310 |
| EarI | CTCTTC | 4 cut(s) | 366, 1971, 2232, 2310 |
| EciI | GGCGGA | 1 cut(s) | 1424 |
| Eco130I | CCWWGG | 2 cut(s) | 1188, 1559 |
| Eco24I | GRGCYC | 1 cut(s) | 112 |
| Eco47I | GGWCC | 2 cut(s) | 1223, 1948 |
| Eco57I | CTGAAG | 1 cut(s) | 804 |
| Eco88I | CYCGRG | 1 cut(s) | 1796 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1956 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1223, 1766 |
| EcoRII | CCWGG | 1 cut(s) | 894 |
| EcoT14I | CCWWGG | 2 cut(s) | 1188, 1559 |
| EcoT22I | ATGCAT | 1 cut(s) | 1182 |
| EcoT38I | GRGCYC | 1 cut(s) | 112 |
| ErhI | CCWWGG | 2 cut(s) | 1188, 1559 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1188, 1220, 1322, 1354 |
| FaqI | GGGAC | 1 cut(s) | 92 |
| FbaI | TGATCA | 2 cut(s) | 1474, 1675 |
| FblI | GTMKAC | 1 cut(s) | 1491 |
| Fnu4HI | GCNGC | 7 cut(s) | 240, 640, 689, 1356, 1532, 2011, 2190 |
| FriOI | GRGCYC | 1 cut(s) | 112 |
| Fsp4HI | GCNGC | 7 cut(s) | 240, 640, 689, 1356, 1532, 2011, 2190 |
| FspBI | CTAG | 6 cut(s) | 309, 335, 615, 765, 978, 1487 |
| FspI | TGCGCA | 1 cut(s) | 2014 |
| GlaI | GCGC | 3 cut(s) | 532, 831, 2014 |
| GluI | GCNGC | 7 cut(s) | 240, 640, 689, 1356, 1532, 2011, 2190 |
| GsuI | CTGGAG | 2 cut(s) | 42, 917 |
| HaeII | RGCGCY | 1 cut(s) | 833 |
| HaeIII | GGCC | 5 cut(s) | 166, 1710, 1768, 1969, 2189 |
| HapII | CCGG | 6 cut(s) | 128, 163, 177, 863, 1006, 1658 |
| HgaI | GACGC | 2 cut(s) | 547, 2034 |
| HhaI | GCGC | 3 cut(s) | 533, 832, 2015 |
| Hin6I | GCGC | 3 cut(s) | 531, 830, 2013 |
| HinP1I | GCGC | 3 cut(s) | 531, 830, 2013 |
| HindIII | AAGCTT | 2 cut(s) | 278, 790 |
| HinfI | GANTC | 6 cut(s) | 154, 205, 341, 450, 545, 1094 |
| HpaII | CCGG | 6 cut(s) | 128, 163, 177, 863, 1006, 1658 |
| HphI | GGTGA | 4 cut(s) | 33, 166, 852, 1867 |
| Hpy166II | GTNNAC | 3 cut(s) | 620, 1492, 1547 |
| Hpy188III | TCNNGA | 9 cut(s) | 113, 128, 765, 779, 1297, 1423, 1472, 1646, 2224 |
| Hpy8I | GTNNAC | 3 cut(s) | 620, 1492, 1547 |
| Hpy99I | CGWCG | 2 cut(s) | 1706, 2028 |
| HpyAV | CCTTC | 7 cut(s) | 20, 684, 734, 1099, 1379, 1466, 1746 |
| HpyCH4III | ACNGT | 6 cut(s) | 493, 575, 1324, 1481, 1511, 1544 |
| HpyCH4IV | ACGT | 5 cut(s) | 231, 351, 611, 843, 1704 |
| HpySE526I | ACGT | 5 cut(s) | 231, 351, 611, 843, 1704 |
| HspAI | GCGC | 3 cut(s) | 531, 830, 2013 |
| Kpn2I | TCCGGA | 1 cut(s) | 127 |
| Ksp22I | TGATCA | 2 cut(s) | 1474, 1675 |
| LmnI | GCTCC | 3 cut(s) | 1310, 1411, 2116 |
| Lsp1109I | GCAGC | 5 cut(s) | 226, 700, 1367, 1518, 1997 |
| LweI | GCATC | 7 cut(s) | 306, 529, 542, 758, 961, 1158, 1174 |
| MaeI | CTAG | 6 cut(s) | 309, 335, 615, 765, 978, 1487 |
| MaeII | ACGT | 5 cut(s) | 231, 351, 611, 843, 1704 |
| MaeIII | GTNAC | 6 cut(s) | 575, 605, 796, 847, 1264, 2198 |
| MflI | RGATCY | 4 cut(s) | 781, 1291, 1419, 1732 |
| MhlI | GDGCHC | 2 cut(s) | 112, 415 |
| MlsI | TGGCCA | 1 cut(s) | 1969 |
| MluNI | TGGCCA | 1 cut(s) | 1969 |
| MlyI | GAGTC | 2 cut(s) | 444, 554 |
| MmeI | TCCRAC | 3 cut(s) | 182, 209, 990 |
| Mox20I | TGGCCA | 1 cut(s) | 1969 |
| Mph1103I | ATGCAT | 1 cut(s) | 1182 |
| MroI | TCCGGA | 1 cut(s) | 127 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2231 |
| MscI | TGGCCA | 1 cut(s) | 1969 |
| MseI | TTAA | 5 cut(s) | 432, 995, 1725, 1920, 2160 |
| Msp20I | TGGCCA | 1 cut(s) | 1969 |
| MspA1I | CMGCKG | 2 cut(s) | 691, 1916 |
| MspCI | CTTAAG | 1 cut(s) | 2159 |
| MspI | CCGG | 6 cut(s) | 128, 163, 177, 863, 1006, 1658 |
| MspR9I | CCNGG | 1 cut(s) | 896 |
| MvaI | CCWGG | 1 cut(s) | 896 |
| MvnI | CGCG | 2 cut(s) | 531, 639 |
| NlaIV | GGNNCC | 3 cut(s) | 412, 1574, 1950 |
| NmuCI | GTSAC | 1 cut(s) | 575 |
| NsbI | TGCGCA | 1 cut(s) | 2014 |
| NsiI | ATGCAT | 1 cut(s) | 1182 |
| NspI | RCATGY | 3 cut(s) | 585, 932, 1470 |
| NspV | TTCGAA | 1 cut(s) | 2235 |
| PciI | ACATGT | 1 cut(s) | 581 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 608 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2231 |
| PfeI | GAWTC | 4 cut(s) | 154, 205, 341, 1094 |
| Pfl23II | CGTACG | 1 cut(s) | 1314 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 422 |
| PkrI | GCNGC | 7 cut(s) | 241, 641, 690, 1357, 1533, 2012, 2191 |
| Ple19I | CGATCG | 1 cut(s) | 2223 |
| PleI | GAGTC | 2 cut(s) | 444, 553 |
| PpsI | GAGTC | 2 cut(s) | 444, 553 |
| PpuMI | RGGWCCY | 1 cut(s) | 1223 |
| PscI | ACATGT | 1 cut(s) | 581 |
| Psp5II | RGGWCCY | 1 cut(s) | 1223 |
| Psp6I | CCWGG | 1 cut(s) | 894 |
| PspGI | CCWGG | 1 cut(s) | 894 |
| PspLI | CGTACG | 1 cut(s) | 1314 |
| PspN4I | GGNNCC | 3 cut(s) | 412, 1574, 1950 |
| PspPI | GGNCC | 3 cut(s) | 1223, 1766, 1948 |
| PspPPI | RGGWCCY | 1 cut(s) | 1223 |
| PstI | CTGCAG | 2 cut(s) | 1357, 1536 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1769 |
| PsuI | RGATCY | 4 cut(s) | 781, 1291, 1419, 1732 |
| PvuI | CGATCG | 1 cut(s) | 2223 |
| PvuII | CAGCTG | 1 cut(s) | 1916 |
| RsaI | GTAC | 7 cut(s) | 222, 333, 528, 733, 1316, 1499, 1546 |
| RsaNI | GTAC | 7 cut(s) | 221, 332, 527, 732, 1315, 1498, 1545 |
| SaqAI | TTAA | 5 cut(s) | 432, 995, 1725, 1920, 2160 |
| SatI | GCNGC | 7 cut(s) | 240, 640, 689, 1356, 1532, 2011, 2190 |
| Sau96I | GGNCC | 3 cut(s) | 1223, 1766, 1948 |
| SchI | GAGTC | 2 cut(s) | 444, 554 |
| ScrFI | CCNGG | 1 cut(s) | 896 |
| SduI | GDGCHC | 2 cut(s) | 112, 415 |
| SfaNI | GCATC | 7 cut(s) | 306, 529, 542, 758, 961, 1158, 1174 |
| SfcI | CTRYAG | 3 cut(s) | 1353, 1377, 1532 |
| SfuI | TTCGAA | 1 cut(s) | 2235 |
| SinI | GGWCC | 2 cut(s) | 1223, 1948 |
| SmiI | ATTTAAAT | 1 cut(s) | 996 |
| SmlI | CTYRAG | 6 cut(s) | 1028, 1295, 1415, 1423, 2069, 2159 |
| SmoI | CTYRAG | 6 cut(s) | 1028, 1295, 1415, 1423, 2069, 2159 |
| SpeI | ACTAGT | 1 cut(s) | 334 |
| SsiI | CCGC | 5 cut(s) | 639, 691, 1435, 2190, 2212 |
| SspMI | CTAG | 6 cut(s) | 309, 335, 615, 765, 978, 1487 |
| StyD4I | CCNGG | 1 cut(s) | 894 |
| StyI | CCWWGG | 2 cut(s) | 1188, 1559 |
| SwaI | ATTTAAAT | 1 cut(s) | 996 |
| TaaI | ACNGT | 6 cut(s) | 493, 575, 1324, 1481, 1511, 1544 |
| TaiI | ACGT | 5 cut(s) | 234, 354, 614, 846, 1707 |
| TaqI | TCGA | 4 cut(s) | 602, 2023, 2223, 2235 |
| TatI | WGTACW | 2 cut(s) | 731, 1497 |
| TauI | GCSGC | 2 cut(s) | 642, 2192 |
| TfiI | GAWTC | 4 cut(s) | 154, 205, 341, 1094 |
| Tru1I | TTAA | 5 cut(s) | 432, 995, 1725, 1920, 2160 |
| Tru9I | TTAA | 5 cut(s) | 432, 995, 1725, 1920, 2160 |
| TscAI | CASTG | 3 cut(s) | 79, 580, 1365 |
| TseFI | GTSAC | 1 cut(s) | 575 |
| TseI | GCWGC | 5 cut(s) | 239, 688, 1355, 1531, 2010 |
| Tsp45I | GTSAC | 1 cut(s) | 575 |
| TspDTI | ATGAA | 6 cut(s) | 146, 582, 1107, 1239, 1331, 2134 |
| TspGWI | ACGGA | 4 cut(s) | 462, 656, 1332, 1952 |
| TspRI | CASTG | 3 cut(s) | 79, 580, 1365 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 422 |
| Vha464I | CTTAAG | 1 cut(s) | 2159 |
| VpaK11BI | GGWCC | 2 cut(s) | 1223, 1948 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1956 |
| XapI | RAATTY | 5 cut(s) | 34, 742, 1039, 1930, 2104 |
| XbaI | TCTAGA | 1 cut(s) | 764 |
| XceI | RCATGY | 3 cut(s) | 585, 932, 1470 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 841, 1557 |
| XmiI | GTMKAC | 1 cut(s) | 1491 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2231 |
| XspI | CTAG | 6 cut(s) | 309, 335, 615, 765, 978, 1487 |
| Zsp2I | ATGCAT | 1 cut(s) | 1182 |