Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000206.1

Orthogroup ID

OG0004961

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 16438

Gene Structure 16437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000206.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1379 bp

atggatcgaagtgaaattcttgaagcagaggacaatctcacattgcagacacattcccctctgtcgattgttgccattgctatcaatggcaacagaaaaagcaaatacattgtgaagtgggcgctggagaagtttattcctgaaggaaacctctttttcaagttgatacatgtccgagcaagaataactggaattccaacaccaatggggaatctgattcctatttcagaagtacgagaagatgtagtagctgcatatagaaaggacatggagtggcagacaagtgagctgcttcttccatacaagaaaatgtgtactcttaagaaggtgcaagttgatgttgtagtcattgagtcagataatgtggcaaatgcaatagcagaggaggtttctaagtctgctataagcaatcttgtcataggtgccccatctcgtggcttgtttacaaggaaacaaaagggactgtccccaaaaatctcagcttgcacaccaggattttgtacagtctatgctgtttcaaaaggaaaattgtcatcactacgcccatctgattcccagtctgttggaagcatcagagatgataacagtgacacttcttctatcagcagttcttcgagtaatgcgtccagctcacaaacaggcacagatcgtggatctgttggttcatactctcattttcgttctccttccctaccgatgcagagatttcaagctctttcaagtatgaaccaaaatctcctgaatacaaaagcaaagtcaaatgaaaccattcattctaaacaccagtctctggatcttggggaggagaaggatgctatgactatgaactcttatcctagtaactcagatgctggacgtgcattgagccactcctctagtactttaagctttgtaacagataaccagtcatggacttctgaccaagcatccacctcagatgtagttaaaaattattcatctgagagccaggtaaatatcaacctggagctagaaaaactgagaattgaactcagacatgtcaaaggaatgtatgcgatggctcaaagtgagactattgatgcttctcggaagataagcaatttaagtaatcggcggttggaggaagcagtaaggctcaaggagataagtgctatggaggagaaagccaaaatgctggcagaacaagagaaggagaactatgaagctgctaagatagaagctgactacatgagacagtgtattgaaagtgaagcttctcaaaggagagaagcagaaatgaaagcctttcatgatgccaaggaaaaagaaaagcttgaaaatgtactagttggtcctgtgcagcaataccagaagttcaggtgggaagatattgtttctgcaacttcatctttctctgagga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr U-box Usp

Protein Analysis

459

Amino Acids

51.02

Weight (kDa)

6.51

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25160 AT5G61550 AT5G61550 AT5G61550 AT5G61550
fragaria_vesca	FvH4_7g27030
malus_domestica	MD01G1177900.v1.1 MD07G1249700.v1.1
prunus_persica	Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1
pyrus_communis	pycom01g18870 pycom07g22310
rosa_chinensis	RchiOBHm_Chr1g0373831
rosa_laevigata	RLG00000026802
rosa_multiflora	Rmu_sc0013735.1_g000010 Rmu_ssc0000206.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283970
rosa_rugosa	Rorug01G0379500
rosa_samantha	Rh1AG389100 Rh1BG353300 Rh1CG366600 Rh1DG384300
rosa_wichuraiana	Rw1G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccB7I	CCANNNNNTGG	2 cut(s)	434, 790
AciI	CCGC	1 cut(s)	1093
AclWI	GGATC	3 cut(s)	12, 661, 801
AcsI	RAATTY	2 cut(s)	15, 192
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	5 cut(s)	234, 316, 502, 880, 1302
AfiI	CCNNNNNNNGG	2 cut(s)	434, 790
AflII	CTTAAG	1 cut(s)	320
AflIII	ACRYGT	2 cut(s)	169, 1015
AgsI	TTSAA	8 cut(s)	23, 160, 519, 710, 720, 1007, 1223, 1295
AhlI	ACTAGT	1 cut(s)	1303
AjiI	CACGTC	1 cut(s)	857
AjnI	CCWGG	3 cut(s)	490, 966, 981
Alw26I	GTCTC	3 cut(s)	792, 1043, 1204
AlwI	GGATC	3 cut(s)	12, 661, 801
AlwNI	CAGNNNCTG	2 cut(s)	790, 851
ApeKI	GCWGC	4 cut(s)	251, 289, 1184, 1318
ApoI	RAATTY	2 cut(s)	15, 192
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
Asp700I	GAANNNNTTC	1 cut(s)	768
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	1310
AvaII	GGWCC	1 cut(s)	1310
BaeGI	GKGCMC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	422
BauI	CACGAG	1 cut(s)	432
BbvI	GCAGC	4 cut(s)	238, 276, 1171, 1330
BccI	CCATC	3 cut(s)	436, 553, 1030
BciT130I	CCWGG	3 cut(s)	492, 968, 983
BcoDI	GTCTC	3 cut(s)	792, 1043, 1204
BcuI	ACTAGT	1 cut(s)	1303
BfaI	CTAG	4 cut(s)	837, 876, 989, 1304
BfoI	RGCGCY	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	320
BisI	GCNGC	4 cut(s)	252, 290, 1185, 1319
BlsI	GCNGC	4 cut(s)	253, 291, 1186, 1320
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	3 cut(s)	492, 968, 983
Bme18I	GGWCC	1 cut(s)	1310
BmgBI	CACGTC	1 cut(s)	857
BmgT120I	GGNCC	1 cut(s)	1310
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	3 cut(s)	492, 968, 983
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	7 cut(s)	579, 687, 802, 838, 935, 1048, 1261
BmuI	ACTGGG	1 cut(s)	550
BpmI	CTGGAG	2 cut(s)	146, 1004
BpuEI	CTTGAG	1 cut(s)	1100
BsaJI	CCNNGG	1 cut(s)	1275
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 790
Bse1I	ACTGG	4 cut(s)	193, 556, 784, 904
Bse3DI	GCAATG	2 cut(s)	41, 75
BseBI	CCWGG	3 cut(s)	492, 968, 983
BseDI	CCNNGG	1 cut(s)	1275
BseGI	GGATG	2 cut(s)	817, 926
BseLI	CCNNNNNNNGG	2 cut(s)	434, 790
BseMI	GCAATG	2 cut(s)	41, 75
BseMII	CTCAG	7 cut(s)	492, 858, 948, 951, 989, 1024, 1365
BseNI	ACTGG	4 cut(s)	193, 556, 784, 904
BseRI	GAGGAG	4 cut(s)	398, 818, 862, 1151
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	4 cut(s)	238, 276, 1171, 1330
BsgI	GTGCAG	1 cut(s)	1337
BshNI	GGYRCC	1 cut(s)	422
BslFI	GGGAC	2 cut(s)	451, 474
BslI	CCNNNNNNNGG	2 cut(s)	434, 790
BsmAI	GTCTC	3 cut(s)	792, 1043, 1204
BsmFI	GGGAC	2 cut(s)	451, 474
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	4, 646, 653, 793
BspACI	CCGC	1 cut(s)	1093
BspCNI	CTCAG	7 cut(s)	491, 857, 947, 952, 990, 1023, 1366
BspHI	TCATGA	1 cut(s)	1267
BspLI	GGNNCC	1 cut(s)	424
BspPI	GGATC	3 cut(s)	12, 661, 801
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	41, 75
BsrGI	TGTACA	1 cut(s)	500
BsrI	ACTGG	4 cut(s)	193, 556, 784, 904
BssECI	CCNNGG	1 cut(s)	1275
BssMI	GATC	4 cut(s)	4, 646, 653, 793
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	1275
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	3 cut(s)	492, 968, 983
Bst4CI	ACNGT	4 cut(s)	465, 505, 587, 1215
BstAFI	CTTAAG	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	484, 1155
BstDEI	CTNAG	9 cut(s)	393, 478, 844, 934, 960, 998, 1010, 1188, 1374
BstF5I	GGATG	2 cut(s)	817, 926
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	4 cut(s)	7, 649, 656, 796
BstMAI	GTCTC	3 cut(s)	792, 1043, 1204
BstMBI	GATC	4 cut(s)	4, 646, 653, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	857
BstNI	CCWGG	3 cut(s)	492, 968, 983
BstNSI	RCATGY	2 cut(s)	173, 1019
BstSCI	CCNGG	3 cut(s)	490, 966, 981
BstSLI	GKGCMC	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	238, 276, 1171, 1330
BstX2I	RGATCY	2 cut(s)	653, 793
BstXI	CCANNNNNNTGG	2 cut(s)	563, 1153
BstYI	RGATCY	2 cut(s)	653, 793
BtgZI	GCGATG	1 cut(s)	1049
BtrI	CACGTC	1 cut(s)	857
BtsCI	GGATG	2 cut(s)	817, 926
BtsIMutI	CAGTG	2 cut(s)	592, 1220
Cac8I	GCNNGC	2 cut(s)	484, 1155
CaiI	CAGNNNCTG	2 cut(s)	790, 851
CciI	TCATGA	1 cut(s)	1267
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	1310
CseI	GACGC	1 cut(s)	612
Csp6I	GTAC	5 cut(s)	233, 315, 501, 879, 1301
CviAII	CATG	6 cut(s)	170, 268, 909, 1016, 1207, 1268
CviQI	GTAC	5 cut(s)	233, 315, 501, 879, 1301
DdeI	CTNAG	9 cut(s)	393, 478, 844, 934, 960, 998, 1010, 1188, 1374
DpnI	GATC	4 cut(s)	6, 648, 655, 795
DpnII	GATC	4 cut(s)	4, 646, 653, 793
Eco130I	CCWWGG	1 cut(s)	1275
Eco47I	GGWCC	1 cut(s)	1310
Eco57I	CTGAAG	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	192
EcoRII	CCWGG	3 cut(s)	490, 966, 981
EcoT14I	CCWWGG	1 cut(s)	1275
ErhI	CCWWGG	1 cut(s)	1275
FaeI	CATG	6 cut(s)	173, 271, 912, 1019, 1210, 1271
FalI	AAGNNNNNCTT	4 cut(s)	1216, 1248, 1275, 1307
FaqI	GGGAC	2 cut(s)	451, 474
FatI	CATG	6 cut(s)	169, 267, 908, 1015, 1206, 1267
Fnu4HI	GCNGC	4 cut(s)	252, 290, 1185, 1319
FokI	GGATG	2 cut(s)	824, 913
Fsp4HI	GCNGC	4 cut(s)	252, 290, 1185, 1319
FspBI	CTAG	4 cut(s)	837, 876, 989, 1304
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	4 cut(s)	252, 290, 1185, 1319
GsuI	CTGGAG	2 cut(s)	146, 1004
HaeII	RGCGCY	1 cut(s)	125
HgaI	GACGC	1 cut(s)	612
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	6 cut(s)	173, 271, 912, 1019, 1210, 1271
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HindIII	AAGCTT	3 cut(s)	886, 1230, 1289
HinfI	GANTC	4 cut(s)	211, 217, 353, 551
Hpy166II	GTNNAC	2 cut(s)	315, 444
Hpy188III	TCNNGA	5 cut(s)	20, 140, 739, 791, 1268
Hpy8I	GTNNAC	2 cut(s)	315, 444
HpyAV	CCTTC	5 cut(s)	137, 319, 696, 802, 1162
HpyCH4III	ACNGT	4 cut(s)	465, 505, 587, 1215
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	9 cut(s)	46, 254, 331, 374, 486, 700, 860, 1318, 1358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	857
HpyF3I	CTNAG	9 cut(s)	393, 478, 844, 934, 960, 998, 1010, 1188, 1374
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	6 cut(s)	173, 271, 912, 1019, 1210, 1271
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	4 cut(s)	4, 646, 653, 793
LmnI	GCTCC	1 cut(s)	985
Lsp1109I	GCAGC	4 cut(s)	238, 276, 1171, 1330
LweI	GCATC	7 cut(s)	579, 687, 802, 838, 935, 1048, 1261
MaeI	CTAG	4 cut(s)	837, 876, 989, 1304
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	3 cut(s)	587, 839, 892
MalI	GATC	4 cut(s)	6, 648, 655, 795
MboI	GATC	4 cut(s)	4, 646, 653, 793
MboII	GAAGA	6 cut(s)	251, 287, 588, 603, 1081, 1355
MflI	RGATCY	2 cut(s)	653, 793
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	6 cut(s)	15, 192, 527, 949, 1002, 1078
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	3 cut(s)	221, 544, 1077
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	4 cut(s)	321, 884, 945, 1082
MspCI	CTTAAG	1 cut(s)	320
MspR9I	CCNGG	3 cut(s)	492, 968, 983
MvaI	CCWGG	3 cut(s)	492, 968, 983
MwoI	GCNNNNNNNGC	1 cut(s)	857
NdeII	GATC	4 cut(s)	4, 646, 653, 793
NlaIII	CATG	6 cut(s)	173, 271, 912, 1019, 1210, 1271
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	2 cut(s)	173, 1019
PagI	TCATGA	1 cut(s)	1267
PciI	ACATGT	2 cut(s)	169, 1015
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	3 cut(s)	211, 217, 551
PflMI	CCANNNNNTGG	2 cut(s)	434, 790
PkrI	GCNGC	4 cut(s)	253, 291, 1186, 1320
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PscI	ACATGT	2 cut(s)	169, 1015
Psp6I	CCWGG	3 cut(s)	490, 966, 981
PspGI	CCWGG	3 cut(s)	490, 966, 981
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	1310
PstNI	CAGNNNCTG	2 cut(s)	790, 851
PsuI	RGATCY	2 cut(s)	653, 793
RsaI	GTAC	5 cut(s)	234, 316, 502, 880, 1302
RsaNI	GTAC	5 cut(s)	233, 315, 501, 879, 1301
SaqAI	TTAA	4 cut(s)	321, 884, 945, 1082
SatI	GCNGC	4 cut(s)	252, 290, 1185, 1319
Sau3AI	GATC	4 cut(s)	4, 646, 653, 793
Sau96I	GGNCC	1 cut(s)	1310
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	492, 968, 983
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	7 cut(s)	579, 687, 802, 838, 935, 1048, 1261
SinI	GGWCC	1 cut(s)	1310
SmlI	CTYRAG	2 cut(s)	320, 1115
SmoI	CTYRAG	2 cut(s)	320, 1115
SpeI	ACTAGT	1 cut(s)	1303
Sse9I	AATT	6 cut(s)	15, 192, 527, 949, 1002, 1078
SsiI	CCGC	1 cut(s)	1093
SspMI	CTAG	4 cut(s)	837, 876, 989, 1304
StyD4I	CCNGG	3 cut(s)	490, 966, 981
StyI	CCWWGG	1 cut(s)	1275
TaaI	ACNGT	4 cut(s)	465, 505, 587, 1215
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	3 cut(s)	7, 65, 614
TasI	AATT	6 cut(s)	15, 192, 527, 949, 1002, 1078
TatI	WGTACW	4 cut(s)	314, 500, 878, 1300
TfiI	GAWTC	3 cut(s)	211, 217, 551
Tru1I	TTAA	4 cut(s)	321, 884, 945, 1082
Tru9I	TTAA	4 cut(s)	321, 884, 945, 1082
TscAI	CASTG	2 cut(s)	592, 1220
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	4 cut(s)	251, 289, 1184, 1318
Tsp45I	GTSAC	1 cut(s)	587
TspRI	CASTG	2 cut(s)	592, 1220
Van91I	CCANNNNNTGG	2 cut(s)	434, 790
Vha464I	CTTAAG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	1310
XapI	RAATTY	2 cut(s)	15, 192
XceI	RCATGY	2 cut(s)	173, 1019
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	4 cut(s)	837, 876, 989, 1304
ZrmI	AGTACT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.