U-box domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25160 AT5G61550 AT5G61550 AT5G61550 AT5G61550 |
| fragaria_vesca | FvH4_7g27030 |
| malus_domestica | MD01G1177900.v1.1 MD07G1249700.v1.1 |
| prunus_persica | Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 |
| pyrus_communis | pycom01g18870 pycom07g22310 |
| rosa_chinensis | RchiOBHm_Chr1g0373831 |
| rosa_laevigata | RLG00000026802 |
| rosa_multiflora | Rmu_sc0013735.1_g000010 Rmu_ssc0000206.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00283970 |
| rosa_rugosa | Rorug01G0379500 |
| rosa_samantha | Rh1AG389100 Rh1BG353300 Rh1CG366600 Rh1DG384300 |
| rosa_wichuraiana | Rw1G034610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1017 |
| Acc36I | ACCTGC | 1 cut(s) | 1579 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 391, 1248 |
| AccII | CGCG | 1 cut(s) | 1880 |
| AciI | CCGC | 3 cut(s) | 694, 1878, 1880 |
| AclWI | GGATC | 4 cut(s) | 262, 402, 987, 1631 |
| AcoI | YGGCCR | 1 cut(s) | 1655 |
| AfaI | GTAC | 2 cut(s) | 481, 903 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 391, 1248, 1646 |
| AflIII | ACRYGT | 1 cut(s) | 616 |
| AhlI | ACTAGT | 1 cut(s) | 904 |
| AjiI | CACGTC | 1 cut(s) | 458 |
| AjnI | CCWGG | 2 cut(s) | 567, 582 |
| Alw26I | GTCTC | 5 cut(s) | 393, 644, 805, 1442, 1785 |
| AlwI | GGATC | 4 cut(s) | 262, 402, 987, 1631 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 391, 452, 1457, 1558 |
| Ama87I | CYCGRG | 1 cut(s) | 1484 |
| AoxI | GGCC | 3 cut(s) | 1396, 1454, 1655 |
| ApeKI | GCWGC | 4 cut(s) | 301, 785, 919, 1043 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 341, 373 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 2 cut(s) | 911, 1454 |
| AsuHPI | GGTGA | 3 cut(s) | 1067, 1400, 1555 |
| AvaI | CYCGRG | 1 cut(s) | 1484 |
| AvaII | GGWCC | 1 cut(s) | 911 |
| BalI | TGGCCA | 1 cut(s) | 1657 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1041, 1073 |
| BbvCI | CCTCAGC | 1 cut(s) | 1285 |
| BbvI | GCAGC | 4 cut(s) | 313, 772, 931, 1055 |
| BccI | CCATC | 4 cut(s) | 154, 1038, 1338, 1877 |
| BciT130I | CCWGG | 2 cut(s) | 569, 584 |
| BclI | TGATCA | 2 cut(s) | 1162, 1363 |
| BcoDI | GTCTC | 5 cut(s) | 393, 644, 805, 1442, 1785 |
| BcuI | ACTAGT | 1 cut(s) | 904 |
| BfaI | CTAG | 7 cut(s) | 438, 477, 590, 905, 1175, 1292, 2022 |
| BfmI | CTRYAG | 1 cut(s) | 1041 |
| BfuAI | ACCTGC | 1 cut(s) | 1579 |
| BisI | GCNGC | 5 cut(s) | 302, 786, 920, 1044, 1878 |
| BlsI | GCNGC | 5 cut(s) | 303, 787, 921, 1045, 1879 |
| BmcAI | AGTACT | 1 cut(s) | 481 |
| Bme1390I | CCNGG | 2 cut(s) | 569, 584 |
| Bme18I | GGWCC | 1 cut(s) | 911 |
| BmeT110I | CYCGRG | 1 cut(s) | 1484 |
| BmgBI | CACGTC | 1 cut(s) | 458 |
| BmgT120I | GGNCC | 2 cut(s) | 911, 1454 |
| BmiI | GGNNCC | 1 cut(s) | 1749 |
| BmrFI | CCNGG | 2 cut(s) | 569, 584 |
| BmrI | ACTGGG | 2 cut(s) | 151, 1509 |
| BmsI | GCATC | 7 cut(s) | 180, 288, 403, 439, 536, 649, 862 |
| BmuI | ACTGGG | 2 cut(s) | 151, 1509 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 24, 56 |
| BpmI | CTGGAG | 2 cut(s) | 605, 1778 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1285 |
| BpuEI | CTTGAG | 4 cut(s) | 5, 701, 1132, 1832 |
| BsaJI | CCNNGG | 4 cut(s) | 876, 1147, 1247, 1878 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2003, 2033 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 391, 1248, 1646 |
| Bse1I | ACTGG | 6 cut(s) | 157, 385, 505, 1434, 1504, 1761 |
| Bse3DI | GCAATG | 1 cut(s) | 642 |
| BseBI | CCWGG | 2 cut(s) | 569, 584 |
| BseDI | CCNNGG | 4 cut(s) | 876, 1147, 1247, 1878 |
| BseGI | GGATG | 7 cut(s) | 418, 527, 1126, 1213, 1633, 1858, 1888 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 391, 1248, 1646 |
| BseMI | GCAATG | 1 cut(s) | 642 |
| BseMII | CTCAG | 8 cut(s) | 459, 549, 552, 590, 625, 966, 1299, 1809 |
| BseNI | ACTGG | 6 cut(s) | 157, 385, 505, 1434, 1504, 1761 |
| BseRI | GAGGAG | 5 cut(s) | 40, 419, 463, 752, 1133 |
| BseXI | GCAGC | 4 cut(s) | 313, 772, 931, 1055 |
| BseYI | CCCAGC | 1 cut(s) | 1646 |
| BsgI | GTGCAG | 2 cut(s) | 938, 1722 |
| Bsh1236I | CGCG | 1 cut(s) | 1880 |
| BshFI | GGCC | 3 cut(s) | 1398, 1456, 1657 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1484 |
| BslFI | GGGAC | 2 cut(s) | 1477, 1733 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 391, 1248, 1646 |
| BsmAI | GTCTC | 5 cut(s) | 393, 644, 805, 1442, 1785 |
| BsmFI | GGGAC | 2 cut(s) | 1477, 1733 |
| BsnI | GGCC | 3 cut(s) | 1398, 1456, 1657 |
| BsoBI | CYCGRG | 1 cut(s) | 1484 |
| Bsp143I | GATC | 9 cut(s) | 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897 |
| BspACI | CCGC | 3 cut(s) | 694, 1878, 1880 |
| BspANI | GGCC | 3 cut(s) | 1398, 1456, 1657 |
| BspCNI | CTCAG | 8 cut(s) | 458, 548, 553, 591, 624, 967, 1298, 1808 |
| BspFNI | CGCG | 1 cut(s) | 1880 |
| BspHI | TCATGA | 2 cut(s) | 868, 1609 |
| BspLI | GGNNCC | 1 cut(s) | 1749 |
| BspMAI | CTGCAG | 1 cut(s) | 1045 |
| BspMI | ACCTGC | 1 cut(s) | 1579 |
| BspPI | GGATC | 4 cut(s) | 262, 402, 987, 1631 |
| BsrDI | GCAATG | 1 cut(s) | 642 |
| BsrI | ACTGG | 6 cut(s) | 157, 385, 505, 1434, 1504, 1761 |
| BssECI | CCNNGG | 4 cut(s) | 876, 1147, 1247, 1878 |
| BssMI | GATC | 9 cut(s) | 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897 |
| BssT1I | CCWWGG | 3 cut(s) | 876, 1147, 1247 |
| Bst2UI | CCWGG | 2 cut(s) | 569, 584 |
| Bst4CI | ACNGT | 5 cut(s) | 188, 816, 1012, 1807, 2031 |
| Bst6I | CTCTTC | 4 cut(s) | 21, 1659, 1920, 1998 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1093, 1571 |
| BstC8I | GCNNGC | 2 cut(s) | 756, 1156 |
| BstDSI | CCRYGG | 1 cut(s) | 1878 |
| BstF5I | GGATG | 7 cut(s) | 418, 527, 1126, 1213, 1633, 1858, 1888 |
| BstFNI | CGCG | 1 cut(s) | 1880 |
| BstKTI | GATC | 9 cut(s) | 250, 257, 397, 982, 1165, 1339, 1366, 1639, 1900 |
| BstMAI | GTCTC | 5 cut(s) | 393, 644, 805, 1442, 1785 |
| BstMBI | GATC | 9 cut(s) | 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 458, 1093, 1571, 1784, 1969 |
| BstNI | CCWGG | 2 cut(s) | 569, 584 |
| BstNSI | RCATGY | 2 cut(s) | 620, 1158 |
| BstSCI | CCNGG | 2 cut(s) | 567, 582 |
| BstSFI | CTRYAG | 1 cut(s) | 1041 |
| BstUI | CGCG | 1 cut(s) | 1880 |
| BstV1I | GCAGC | 4 cut(s) | 313, 772, 931, 1055 |
| BstX2I | RGATCY | 4 cut(s) | 254, 394, 979, 1636 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 164, 754 |
| BstYI | RGATCY | 4 cut(s) | 254, 394, 979, 1636 |
| BsuRI | GGCC | 3 cut(s) | 1398, 1456, 1657 |
| BtgI | CCRYGG | 1 cut(s) | 1878 |
| BtrI | CACGTC | 1 cut(s) | 458 |
| BtsCI | GGATG | 7 cut(s) | 418, 527, 1126, 1213, 1633, 1858, 1888 |
| BtsIMutI | CAGTG | 4 cut(s) | 193, 821, 1754, 1817 |
| BveI | ACCTGC | 1 cut(s) | 1579 |
| Cac8I | GCNNGC | 2 cut(s) | 756, 1156 |
| CaiI | CAGNNNCTG | 4 cut(s) | 391, 452, 1457, 1558 |
| CciI | TCATGA | 2 cut(s) | 868, 1609 |
| Cfr13I | GGNCC | 2 cut(s) | 911, 1454 |
| Cfr42I | CCGCGG | 1 cut(s) | 1881 |
| CseI | GACGC | 1 cut(s) | 213 |
| Csp6I | GTAC | 2 cut(s) | 480, 902 |
| CviAII | CATG | 8 cut(s) | 85, 510, 617, 808, 869, 1155, 1189, 1610 |
| CviQI | GTAC | 2 cut(s) | 480, 902 |
| DpnI | GATC | 9 cut(s) | 249, 256, 396, 981, 1164, 1338, 1365, 1638, 1899 |
| DpnII | GATC | 9 cut(s) | 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897 |
| EaeI | YGGCCR | 1 cut(s) | 1655 |
| Eam1104I | CTCTTC | 4 cut(s) | 21, 1659, 1920, 1998 |
| EarI | CTCTTC | 4 cut(s) | 21, 1659, 1920, 1998 |
| Eco130I | CCWWGG | 3 cut(s) | 876, 1147, 1247 |
| Eco47I | GGWCC | 1 cut(s) | 911 |
| Eco88I | CYCGRG | 1 cut(s) | 1484 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1454 |
| EcoRII | CCWGG | 2 cut(s) | 567, 582 |
| EcoT14I | CCWWGG | 3 cut(s) | 876, 1147, 1247 |
| ErhI | CCWWGG | 3 cut(s) | 876, 1147, 1247 |
| FaeI | CATG | 8 cut(s) | 88, 513, 620, 811, 872, 1158, 1192, 1613 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 817, 849, 876, 908, 1010, 1042, 1076, 1108 |
| FaqI | GGGAC | 2 cut(s) | 1477, 1733 |
| FatI | CATG | 8 cut(s) | 84, 509, 616, 807, 868, 1154, 1188, 1609 |
| FauNDI | CATATG | 1 cut(s) | 1003 |
| FbaI | TGATCA | 2 cut(s) | 1162, 1363 |
| Fnu4HI | GCNGC | 5 cut(s) | 302, 786, 920, 1044, 1878 |
| FokI | GGATG | 7 cut(s) | 425, 514, 1113, 1220, 1640, 1865, 1895 |
| Fsp4HI | GCNGC | 5 cut(s) | 302, 786, 920, 1044, 1878 |
| FspBI | CTAG | 7 cut(s) | 438, 477, 590, 905, 1175, 1292, 2022 |
| GluI | GCNGC | 5 cut(s) | 302, 786, 920, 1044, 1878 |
| GsaI | CCCAGC | 1 cut(s) | 1650 |
| GsuI | CTGGAG | 2 cut(s) | 605, 1778 |
| HaeIII | GGCC | 3 cut(s) | 1398, 1456, 1657 |
| HgaI | GACGC | 1 cut(s) | 213 |
| Hin1II | CATG | 8 cut(s) | 88, 513, 620, 811, 872, 1158, 1192, 1613 |
| HincII | GTYRAC | 1 cut(s) | 81 |
| HindII | GTYRAC | 1 cut(s) | 81 |
| HindIII | AAGCTT | 3 cut(s) | 487, 831, 890 |
| HinfI | GANTC | 6 cut(s) | 28, 152, 466, 1072, 1793, 1799 |
| HpaI | GTTAAC | 1 cut(s) | 81 |
| HphI | GGTGA | 3 cut(s) | 1067, 1400, 1555 |
| Hpy166II | GTNNAC | 1 cut(s) | 81 |
| Hpy188III | TCNNGA | 7 cut(s) | 22, 392, 869, 1111, 1334, 1610, 2022 |
| Hpy8I | GTNNAC | 1 cut(s) | 81 |
| Hpy99I | CGWCG | 1 cut(s) | 1716 |
| HpyAV | CCTTC | 6 cut(s) | 297, 403, 763, 1067, 1434, 1618 |
| HpyCH4III | ACNGT | 5 cut(s) | 188, 816, 1012, 1807, 2031 |
| HpyCH4IV | ACGT | 2 cut(s) | 457, 1714 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 458, 1093, 1571, 1784, 1969 |
| HpySE526I | ACGT | 2 cut(s) | 457, 1714 |
| Hsp92II | CATG | 8 cut(s) | 88, 513, 620, 811, 872, 1158, 1192, 1613 |
| Ksp22I | TGATCA | 2 cut(s) | 1162, 1363 |
| KspAI | GTTAAC | 1 cut(s) | 81 |
| KspI | CCGCGG | 1 cut(s) | 1881 |
| Kzo9I | GATC | 9 cut(s) | 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897 |
| LmnI | GCTCC | 2 cut(s) | 586, 1099 |
| Lsp1109I | GCAGC | 4 cut(s) | 313, 772, 931, 1055 |
| LweI | GCATC | 7 cut(s) | 180, 288, 403, 439, 536, 649, 862 |
| MaeI | CTAG | 7 cut(s) | 438, 477, 590, 905, 1175, 1292, 2022 |
| MaeII | ACGT | 2 cut(s) | 457, 1714 |
| MaeIII | GTNAC | 6 cut(s) | 188, 440, 467, 493, 1472, 1886 |
| MalI | GATC | 9 cut(s) | 249, 256, 396, 981, 1164, 1338, 1365, 1638, 1899 |
| MboI | GATC | 9 cut(s) | 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897 |
| MfeI | CAATTG | 1 cut(s) | 2004 |
| MflI | RGATCY | 4 cut(s) | 254, 394, 979, 1636 |
| MlsI | TGGCCA | 1 cut(s) | 1657 |
| MluNI | TGGCCA | 1 cut(s) | 1657 |
| MlyI | GAGTC | 3 cut(s) | 37, 475, 1787 |
| MmeI | TCCRAC | 3 cut(s) | 145, 678, 1147 |
| Mox20I | TGGCCA | 1 cut(s) | 1657 |
| MroXI | GAANNNNTTC | 1 cut(s) | 369 |
| MscI | TGGCCA | 1 cut(s) | 1657 |
| MseI | TTAA | 5 cut(s) | 57, 80, 546, 683, 1413 |
| Msp20I | TGGCCA | 1 cut(s) | 1657 |
| MspA1I | CMGCKG | 1 cut(s) | 1880 |
| MspR9I | CCNGG | 2 cut(s) | 569, 584 |
| MunI | CAATTG | 1 cut(s) | 2004 |
| MvaI | CCWGG | 2 cut(s) | 569, 584 |
| MvnI | CGCG | 1 cut(s) | 1880 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 458, 1093, 1571, 1784, 1969 |
| NdeI | CATATG | 1 cut(s) | 1003 |
| NdeII | GATC | 9 cut(s) | 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897 |
| NlaIII | CATG | 8 cut(s) | 88, 513, 620, 811, 872, 1158, 1192, 1613 |
| NlaIV | GGNNCC | 1 cut(s) | 1749 |
| NmuCI | GTSAC | 2 cut(s) | 188, 467 |
| NspI | RCATGY | 2 cut(s) | 620, 1158 |
| PaeI | GCATGC | 1 cut(s) | 1158 |
| PagI | TCATGA | 2 cut(s) | 868, 1609 |
| PciI | ACATGT | 1 cut(s) | 616 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 221 |
| PdmI | GAANNNNTTC | 1 cut(s) | 369 |
| PfeI | GAWTC | 3 cut(s) | 152, 1072, 1799 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 391, 1248 |
| PkrI | GCNGC | 5 cut(s) | 303, 787, 921, 1045, 1879 |
| PleI | GAGTC | 3 cut(s) | 36, 474, 1787 |
| PpsI | GAGTC | 3 cut(s) | 36, 474, 1787 |
| PscI | ACATGT | 1 cut(s) | 616 |
| PsiI | TTATAA | 1 cut(s) | 1017 |
| Psp6I | CCWGG | 2 cut(s) | 567, 582 |
| PspFI | CCCAGC | 1 cut(s) | 1646 |
| PspGI | CCWGG | 2 cut(s) | 567, 582 |
| PspN4I | GGNNCC | 1 cut(s) | 1749 |
| PspPI | GGNCC | 2 cut(s) | 911, 1454 |
| PstI | CTGCAG | 1 cut(s) | 1045 |
| PstNI | CAGNNNCTG | 4 cut(s) | 391, 452, 1457, 1558 |
| PsuI | RGATCY | 4 cut(s) | 254, 394, 979, 1636 |
| RsaI | GTAC | 2 cut(s) | 481, 903 |
| RsaNI | GTAC | 2 cut(s) | 480, 902 |
| SacII | CCGCGG | 1 cut(s) | 1881 |
| SaqAI | TTAA | 5 cut(s) | 57, 80, 546, 683, 1413 |
| SatI | GCNGC | 5 cut(s) | 302, 786, 920, 1044, 1878 |
| Sau3AI | GATC | 9 cut(s) | 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897 |
| Sau96I | GGNCC | 2 cut(s) | 911, 1454 |
| ScaI | AGTACT | 1 cut(s) | 481 |
| SchI | GAGTC | 3 cut(s) | 37, 475, 1787 |
| ScrFI | CCNGG | 2 cut(s) | 569, 584 |
| SfaNI | GCATC | 7 cut(s) | 180, 288, 403, 439, 536, 649, 862 |
| SfcI | CTRYAG | 1 cut(s) | 1041 |
| Sfr303I | CCGCGG | 1 cut(s) | 1881 |
| SgrBI | CCGCGG | 1 cut(s) | 1881 |
| SinI | GGWCC | 1 cut(s) | 911 |
| SmlI | CTYRAG | 4 cut(s) | 20, 716, 1111, 1847 |
| SmoI | CTYRAG | 4 cut(s) | 20, 716, 1111, 1847 |
| SpeI | ACTAGT | 1 cut(s) | 904 |
| SphI | GCATGC | 1 cut(s) | 1158 |
| SsiI | CCGC | 3 cut(s) | 694, 1878, 1880 |
| SspMI | CTAG | 7 cut(s) | 438, 477, 590, 905, 1175, 1292, 2022 |
| StyD4I | CCNGG | 2 cut(s) | 567, 582 |
| StyI | CCWWGG | 3 cut(s) | 876, 1147, 1247 |
| TaaI | ACNGT | 5 cut(s) | 188, 816, 1012, 1807, 2031 |
| TaiI | ACGT | 2 cut(s) | 460, 1717 |
| TaqI | TCGA | 4 cut(s) | 31, 215, 484, 1711 |
| TatI | WGTACW | 2 cut(s) | 479, 901 |
| TauI | GCSGC | 1 cut(s) | 1880 |
| TfiI | GAWTC | 3 cut(s) | 152, 1072, 1799 |
| Tru1I | TTAA | 5 cut(s) | 57, 80, 546, 683, 1413 |
| Tru9I | TTAA | 5 cut(s) | 57, 80, 546, 683, 1413 |
| TscAI | CASTG | 4 cut(s) | 193, 821, 1761, 1817 |
| TseFI | GTSAC | 2 cut(s) | 188, 467 |
| TseI | GCWGC | 4 cut(s) | 301, 785, 919, 1043 |
| Tsp45I | GTSAC | 2 cut(s) | 188, 467 |
| TspGWI | ACGGA | 1 cut(s) | 1510 |
| TspRI | CASTG | 4 cut(s) | 193, 821, 1761, 1817 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 391, 1248 |
| VpaK11BI | GGWCC | 1 cut(s) | 911 |
| XbaI | TCTAGA | 1 cut(s) | 2021 |
| XceI | RCATGY | 2 cut(s) | 620, 1158 |
| XmnI | GAANNNNTTC | 1 cut(s) | 369 |
| XspI | CTAG | 7 cut(s) | 438, 477, 590, 905, 1175, 1292, 2022 |
| ZrmI | AGTACT | 1 cut(s) | 481 |