RLG00000026802

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
6145676 .. 6150505
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026802

Sequence Viewer

Length: 2034 bp
ATGGGTTTCCGTTCTCTTCTCAAGAGGAGTCGAGGAAAGCTCAAAGGTTGTGCCATTAAGTTTCAGTTCTTTTTTGGGTTAACCATGAAGTTCTCTTTCTGGGTCGTCTATGCTGTTTCAAAAGGAAAATTGTCATCACTACGCCCATCTGATTCCCAGTCTGTTGGAAGCATCAGAGATGATAACAGTGACACTTCTTCTATCGGCAGTTCTTCGAGTAATGCGTCCAGCTCACAAACAGGCACAGATCGTGGATCTGTTGGTTCATACTCTCATTTTCGTTCTCCTTCCCTACCGATGCAGCGATTTCAAGCTCTTTCAAGTATGAACCAAAATCTTCTGAACACAAAAGCAAAGTCAAATGAAACCATTCATTCTAAACACCAGTCTCTGGATCTTGGGGAGGAGAAGGATGCTATGACTATGAACTCTTATCCTAGTAACTCAGATGCTGGACGTGCATTGAGTCACTCCTCTAGTACTCGAAGCTTTGTAACAGATAACCAGTCATGGACTTCTGACCAAGCATCCACCTCAGATGTAGTTAAAAATTACTCATCTGAGAGCCAGGTAAATATCAACCTGGAGCTAGAAAAACTGAGAATTGAACTCAGACATGTCAAAGGAATGTATGCAATGGCTCAAAGTGAGACTATTGATGCTTCTCGGAAGATAAGCAATTTAAGTAATCGGCGGTTGGAGGAAGCAGTAAGGCTCAAGGAGATAAGTGCTATGGAGGAGAAAGCCAAAATGCTGGCAGAACAAGAGAAGGAGAAGTATGAAGCTGCTAAGATAGAAGCTGACTACATGAGACAGTGTATTGAAAGTGAAGCTTCTCAAAGGAGAGAAGCAGAAATGAAAGCCTTTCATGATGCCAAGGAAAAAGAAAAGCTTGAAAATGTACTAGTTGGTCCTGTGCAGCAATACCAGAAGTTCAGGTGGGAAGATATTGTTTCTGCAACTTCATCTTTCTCTGAGGATCTTAGGATTGGTATGGGTGCATATGGAACTGTTTATAAGAGCAACTTCCATCATACAACTGCAGCAGTAAAAGTCCTTCACTCTAAAGAGAATCACCAAACTAAGCAATTCTTGCAGGAGCTTGAAATCTTGAGCAAAATCCGACATCCCCATTTGCTTCTCCTCCTTGGTGCATGCCCTGATCATAGTTGCCTAGTGTATGAATACATGGAAAATGGTAGCTTGGATGACAGGCTGAACCAGAAAAATAACACACCCCCCATTCCTTGGTTTGAGAGGTTTCGGATTGCTTGGGAAGTAGCCTCAGCTCTAGTCTTTCTTCACAGCTCAAAGCCTAAACCAATTATCCATCGTGATCTGAAACCAGCAAACATCTTGCTTGATCATAACCTTTTGAGCAAGATTGGTGATGTCGGCCTTTCTACAATGCTTAATTTAGACCCTTCTATGTCCAGTATATACAATGAGACAGGGCCTGTTGGGACAATGTGTTACATAGACCCCGAGTATCAACGGACTGGGGTAATCTCTCCAAAATCAGATGTTTATGCTTTGGGAATGGTGATTTTGCAGTTGCTGACTGCAAAACCTGCAATAGCTATAACTCATCTGGTGGAAACAGCTATTCATGATAAAAGTTTGAAGGATGTTTTAGATCCTAAAGCTGGGTCTTGGCCAATGGAAGAGGCAAGGCAATTAGCTGAATTGGGATTGAGCTGTGCAGAGCTTCGACGTAGGGACAGACCTGACTTGAAAGAGCAAGTGGTTCCAGCACTGGAGAGATTGAAAAAGGTTGCTGATAAAGCAAGAGACTCAGATTCCACAGTTCAGTGCCTACCTCCTAACCACTTCATCTGTCCAATTCTCAAGGATGTGATGAATGAGCCTTGTGTTGCCGCGGATGGTTACACTTATGATCGCAGGGCAATAGAGAAATGGCTTGAAGAGAATGATAACTCCCCAATGACAAACTTGGCTATGCCAAACAAGCACCTAATACCAAACTATACTCTTCTTTCTGCAATTGTGGAGTGGAAGTCTAGAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

678

Amino Acids

76.21

Weight (kDa)

7.95

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 328 - 578 1.3e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 329 - 580 6.8e-39 Protein tyrosine and serine/threonine kinase
U-box PF04564 608 - 676 3.4e-17 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
Acc36I ACCTGC 1 cut(s) 1579
AccB7I CCANNNNNTGG 2 cut(s) 391, 1248
AccII CGCG 1 cut(s) 1880
AciI CCGC 3 cut(s) 694, 1878, 1880
AclWI GGATC 4 cut(s) 262, 402, 987, 1631
AcoI YGGCCR 1 cut(s) 1655
AfaI GTAC 2 cut(s) 481, 903
AfiI CCNNNNNNNGG 3 cut(s) 391, 1248, 1646
AflIII ACRYGT 1 cut(s) 616
AhlI ACTAGT 1 cut(s) 904
AjiI CACGTC 1 cut(s) 458
AjnI CCWGG 2 cut(s) 567, 582
Alw26I GTCTC 5 cut(s) 393, 644, 805, 1442, 1785
AlwI GGATC 4 cut(s) 262, 402, 987, 1631
AlwNI CAGNNNCTG 4 cut(s) 391, 452, 1457, 1558
Ama87I CYCGRG 1 cut(s) 1484
AoxI GGCC 3 cut(s) 1396, 1454, 1655
ApeKI GCWGC 4 cut(s) 301, 785, 919, 1043
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp700I GAANNNNTTC 1 cut(s) 369
AspS9I GGNCC 2 cut(s) 911, 1454
AsuHPI GGTGA 3 cut(s) 1067, 1400, 1555
AvaI CYCGRG 1 cut(s) 1484
AvaII GGWCC 1 cut(s) 911
BalI TGGCCA 1 cut(s) 1657
BarI GAAGNNNNNNTAC 2 cut(s) 1041, 1073
BbvCI CCTCAGC 1 cut(s) 1285
BbvI GCAGC 4 cut(s) 313, 772, 931, 1055
BccI CCATC 4 cut(s) 154, 1038, 1338, 1877
BciT130I CCWGG 2 cut(s) 569, 584
BclI TGATCA 2 cut(s) 1162, 1363
BcoDI GTCTC 5 cut(s) 393, 644, 805, 1442, 1785
BcuI ACTAGT 1 cut(s) 904
BfaI CTAG 7 cut(s) 438, 477, 590, 905, 1175, 1292, 2022
BfmI CTRYAG 1 cut(s) 1041
BfuAI ACCTGC 1 cut(s) 1579
BisI GCNGC 5 cut(s) 302, 786, 920, 1044, 1878
BlsI GCNGC 5 cut(s) 303, 787, 921, 1045, 1879
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 569, 584
Bme18I GGWCC 1 cut(s) 911
BmeT110I CYCGRG 1 cut(s) 1484
BmgBI CACGTC 1 cut(s) 458
BmgT120I GGNCC 2 cut(s) 911, 1454
BmiI GGNNCC 1 cut(s) 1749
BmrFI CCNGG 2 cut(s) 569, 584
BmrI ACTGGG 2 cut(s) 151, 1509
BmsI GCATC 7 cut(s) 180, 288, 403, 439, 536, 649, 862
BmuI ACTGGG 2 cut(s) 151, 1509
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpmI CTGGAG 2 cut(s) 605, 1778
Bpu10I CCTNAGC 1 cut(s) 1285
BpuEI CTTGAG 4 cut(s) 5, 701, 1132, 1832
BsaJI CCNNGG 4 cut(s) 876, 1147, 1247, 1878
BsaXI ACNNNNNCTCC 2 cut(s) 2003, 2033
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 1248, 1646
Bse1I ACTGG 6 cut(s) 157, 385, 505, 1434, 1504, 1761
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 2 cut(s) 569, 584
BseDI CCNNGG 4 cut(s) 876, 1147, 1247, 1878
BseGI GGATG 7 cut(s) 418, 527, 1126, 1213, 1633, 1858, 1888
BseLI CCNNNNNNNGG 3 cut(s) 391, 1248, 1646
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 8 cut(s) 459, 549, 552, 590, 625, 966, 1299, 1809
BseNI ACTGG 6 cut(s) 157, 385, 505, 1434, 1504, 1761
BseRI GAGGAG 5 cut(s) 40, 419, 463, 752, 1133
BseXI GCAGC 4 cut(s) 313, 772, 931, 1055
BseYI CCCAGC 1 cut(s) 1646
BsgI GTGCAG 2 cut(s) 938, 1722
Bsh1236I CGCG 1 cut(s) 1880
BshFI GGCC 3 cut(s) 1398, 1456, 1657
BsiHKCI CYCGRG 1 cut(s) 1484
BslFI GGGAC 2 cut(s) 1477, 1733
BslI CCNNNNNNNGG 3 cut(s) 391, 1248, 1646
BsmAI GTCTC 5 cut(s) 393, 644, 805, 1442, 1785
BsmFI GGGAC 2 cut(s) 1477, 1733
BsnI GGCC 3 cut(s) 1398, 1456, 1657
BsoBI CYCGRG 1 cut(s) 1484
Bsp143I GATC 9 cut(s) 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897
BspACI CCGC 3 cut(s) 694, 1878, 1880
BspANI GGCC 3 cut(s) 1398, 1456, 1657
BspCNI CTCAG 8 cut(s) 458, 548, 553, 591, 624, 967, 1298, 1808
BspFNI CGCG 1 cut(s) 1880
BspHI TCATGA 2 cut(s) 868, 1609
BspLI GGNNCC 1 cut(s) 1749
BspMAI CTGCAG 1 cut(s) 1045
BspMI ACCTGC 1 cut(s) 1579
BspPI GGATC 4 cut(s) 262, 402, 987, 1631
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 6 cut(s) 157, 385, 505, 1434, 1504, 1761
BssECI CCNNGG 4 cut(s) 876, 1147, 1247, 1878
BssMI GATC 9 cut(s) 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897
BssT1I CCWWGG 3 cut(s) 876, 1147, 1247
Bst2UI CCWGG 2 cut(s) 569, 584
Bst4CI ACNGT 5 cut(s) 188, 816, 1012, 1807, 2031
Bst6I CTCTTC 4 cut(s) 21, 1659, 1920, 1998
BstAPI GCANNNNNTGC 2 cut(s) 1093, 1571
BstC8I GCNNGC 2 cut(s) 756, 1156
BstDSI CCRYGG 1 cut(s) 1878
BstF5I GGATG 7 cut(s) 418, 527, 1126, 1213, 1633, 1858, 1888
BstFNI CGCG 1 cut(s) 1880
BstKTI GATC 9 cut(s) 250, 257, 397, 982, 1165, 1339, 1366, 1639, 1900
BstMAI GTCTC 5 cut(s) 393, 644, 805, 1442, 1785
BstMBI GATC 9 cut(s) 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897
BstMWI GCNNNNNNNGC 5 cut(s) 458, 1093, 1571, 1784, 1969
BstNI CCWGG 2 cut(s) 569, 584
BstNSI RCATGY 2 cut(s) 620, 1158
BstSCI CCNGG 2 cut(s) 567, 582
BstSFI CTRYAG 1 cut(s) 1041
BstUI CGCG 1 cut(s) 1880
BstV1I GCAGC 4 cut(s) 313, 772, 931, 1055
BstX2I RGATCY 4 cut(s) 254, 394, 979, 1636
BstXI CCANNNNNNTGG 2 cut(s) 164, 754
BstYI RGATCY 4 cut(s) 254, 394, 979, 1636
BsuRI GGCC 3 cut(s) 1398, 1456, 1657
BtgI CCRYGG 1 cut(s) 1878
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 7 cut(s) 418, 527, 1126, 1213, 1633, 1858, 1888
BtsIMutI CAGTG 4 cut(s) 193, 821, 1754, 1817
BveI ACCTGC 1 cut(s) 1579
Cac8I GCNNGC 2 cut(s) 756, 1156
CaiI CAGNNNCTG 4 cut(s) 391, 452, 1457, 1558
CciI TCATGA 2 cut(s) 868, 1609
Cfr13I GGNCC 2 cut(s) 911, 1454
Cfr42I CCGCGG 1 cut(s) 1881
CseI GACGC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 480, 902
CviAII CATG 8 cut(s) 85, 510, 617, 808, 869, 1155, 1189, 1610
CviQI GTAC 2 cut(s) 480, 902
DpnI GATC 9 cut(s) 249, 256, 396, 981, 1164, 1338, 1365, 1638, 1899
DpnII GATC 9 cut(s) 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897
EaeI YGGCCR 1 cut(s) 1655
Eam1104I CTCTTC 4 cut(s) 21, 1659, 1920, 1998
EarI CTCTTC 4 cut(s) 21, 1659, 1920, 1998
Eco130I CCWWGG 3 cut(s) 876, 1147, 1247
Eco47I GGWCC 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 1484
EcoO109I RGGNCCY 1 cut(s) 1454
EcoRII CCWGG 2 cut(s) 567, 582
EcoT14I CCWWGG 3 cut(s) 876, 1147, 1247
ErhI CCWWGG 3 cut(s) 876, 1147, 1247
FaeI CATG 8 cut(s) 88, 513, 620, 811, 872, 1158, 1192, 1613
FalI AAGNNNNNCTT 8 cut(s) 817, 849, 876, 908, 1010, 1042, 1076, 1108
FaqI GGGAC 2 cut(s) 1477, 1733
FatI CATG 8 cut(s) 84, 509, 616, 807, 868, 1154, 1188, 1609
FauNDI CATATG 1 cut(s) 1003
FbaI TGATCA 2 cut(s) 1162, 1363
Fnu4HI GCNGC 5 cut(s) 302, 786, 920, 1044, 1878
FokI GGATG 7 cut(s) 425, 514, 1113, 1220, 1640, 1865, 1895
Fsp4HI GCNGC 5 cut(s) 302, 786, 920, 1044, 1878
FspBI CTAG 7 cut(s) 438, 477, 590, 905, 1175, 1292, 2022
GluI GCNGC 5 cut(s) 302, 786, 920, 1044, 1878
GsaI CCCAGC 1 cut(s) 1650
GsuI CTGGAG 2 cut(s) 605, 1778
HaeIII GGCC 3 cut(s) 1398, 1456, 1657
HgaI GACGC 1 cut(s) 213
Hin1II CATG 8 cut(s) 88, 513, 620, 811, 872, 1158, 1192, 1613
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 3 cut(s) 487, 831, 890
HinfI GANTC 6 cut(s) 28, 152, 466, 1072, 1793, 1799
HpaI GTTAAC 1 cut(s) 81
HphI GGTGA 3 cut(s) 1067, 1400, 1555
Hpy166II GTNNAC 1 cut(s) 81
Hpy188III TCNNGA 7 cut(s) 22, 392, 869, 1111, 1334, 1610, 2022
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 1716
HpyAV CCTTC 6 cut(s) 297, 403, 763, 1067, 1434, 1618
HpyCH4III ACNGT 5 cut(s) 188, 816, 1012, 1807, 2031
HpyCH4IV ACGT 2 cut(s) 457, 1714
HpyF10VI GCNNNNNNNGC 5 cut(s) 458, 1093, 1571, 1784, 1969
HpySE526I ACGT 2 cut(s) 457, 1714
Hsp92II CATG 8 cut(s) 88, 513, 620, 811, 872, 1158, 1192, 1613
Ksp22I TGATCA 2 cut(s) 1162, 1363
KspAI GTTAAC 1 cut(s) 81
KspI CCGCGG 1 cut(s) 1881
Kzo9I GATC 9 cut(s) 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897
LmnI GCTCC 2 cut(s) 586, 1099
Lsp1109I GCAGC 4 cut(s) 313, 772, 931, 1055
LweI GCATC 7 cut(s) 180, 288, 403, 439, 536, 649, 862
MaeI CTAG 7 cut(s) 438, 477, 590, 905, 1175, 1292, 2022
MaeII ACGT 2 cut(s) 457, 1714
MaeIII GTNAC 6 cut(s) 188, 440, 467, 493, 1472, 1886
MalI GATC 9 cut(s) 249, 256, 396, 981, 1164, 1338, 1365, 1638, 1899
MboI GATC 9 cut(s) 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897
MfeI CAATTG 1 cut(s) 2004
MflI RGATCY 4 cut(s) 254, 394, 979, 1636
MlsI TGGCCA 1 cut(s) 1657
MluNI TGGCCA 1 cut(s) 1657
MlyI GAGTC 3 cut(s) 37, 475, 1787
MmeI TCCRAC 3 cut(s) 145, 678, 1147
Mox20I TGGCCA 1 cut(s) 1657
MroXI GAANNNNTTC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 1657
MseI TTAA 5 cut(s) 57, 80, 546, 683, 1413
Msp20I TGGCCA 1 cut(s) 1657
MspA1I CMGCKG 1 cut(s) 1880
MspR9I CCNGG 2 cut(s) 569, 584
MunI CAATTG 1 cut(s) 2004
MvaI CCWGG 2 cut(s) 569, 584
MvnI CGCG 1 cut(s) 1880
MwoI GCNNNNNNNGC 5 cut(s) 458, 1093, 1571, 1784, 1969
NdeI CATATG 1 cut(s) 1003
NdeII GATC 9 cut(s) 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897
NlaIII CATG 8 cut(s) 88, 513, 620, 811, 872, 1158, 1192, 1613
NlaIV GGNNCC 1 cut(s) 1749
NmuCI GTSAC 2 cut(s) 188, 467
NspI RCATGY 2 cut(s) 620, 1158
PaeI GCATGC 1 cut(s) 1158
PagI TCATGA 2 cut(s) 868, 1609
PciI ACATGT 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 152, 1072, 1799
PflMI CCANNNNNTGG 2 cut(s) 391, 1248
PkrI GCNGC 5 cut(s) 303, 787, 921, 1045, 1879
PleI GAGTC 3 cut(s) 36, 474, 1787
PpsI GAGTC 3 cut(s) 36, 474, 1787
PscI ACATGT 1 cut(s) 616
PsiI TTATAA 1 cut(s) 1017
Psp6I CCWGG 2 cut(s) 567, 582
PspFI CCCAGC 1 cut(s) 1646
PspGI CCWGG 2 cut(s) 567, 582
PspN4I GGNNCC 1 cut(s) 1749
PspPI GGNCC 2 cut(s) 911, 1454
PstI CTGCAG 1 cut(s) 1045
PstNI CAGNNNCTG 4 cut(s) 391, 452, 1457, 1558
PsuI RGATCY 4 cut(s) 254, 394, 979, 1636
RsaI GTAC 2 cut(s) 481, 903
RsaNI GTAC 2 cut(s) 480, 902
SacII CCGCGG 1 cut(s) 1881
SaqAI TTAA 5 cut(s) 57, 80, 546, 683, 1413
SatI GCNGC 5 cut(s) 302, 786, 920, 1044, 1878
Sau3AI GATC 9 cut(s) 247, 254, 394, 979, 1162, 1336, 1363, 1636, 1897
Sau96I GGNCC 2 cut(s) 911, 1454
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 3 cut(s) 37, 475, 1787
ScrFI CCNGG 2 cut(s) 569, 584
SfaNI GCATC 7 cut(s) 180, 288, 403, 439, 536, 649, 862
SfcI CTRYAG 1 cut(s) 1041
Sfr303I CCGCGG 1 cut(s) 1881
SgrBI CCGCGG 1 cut(s) 1881
SinI GGWCC 1 cut(s) 911
SmlI CTYRAG 4 cut(s) 20, 716, 1111, 1847
SmoI CTYRAG 4 cut(s) 20, 716, 1111, 1847
SpeI ACTAGT 1 cut(s) 904
SphI GCATGC 1 cut(s) 1158
SsiI CCGC 3 cut(s) 694, 1878, 1880
SspMI CTAG 7 cut(s) 438, 477, 590, 905, 1175, 1292, 2022
StyD4I CCNGG 2 cut(s) 567, 582
StyI CCWWGG 3 cut(s) 876, 1147, 1247
TaaI ACNGT 5 cut(s) 188, 816, 1012, 1807, 2031
TaiI ACGT 2 cut(s) 460, 1717
TaqI TCGA 4 cut(s) 31, 215, 484, 1711
TatI WGTACW 2 cut(s) 479, 901
TauI GCSGC 1 cut(s) 1880
TfiI GAWTC 3 cut(s) 152, 1072, 1799
Tru1I TTAA 5 cut(s) 57, 80, 546, 683, 1413
Tru9I TTAA 5 cut(s) 57, 80, 546, 683, 1413
TscAI CASTG 4 cut(s) 193, 821, 1761, 1817
TseFI GTSAC 2 cut(s) 188, 467
TseI GCWGC 4 cut(s) 301, 785, 919, 1043
Tsp45I GTSAC 2 cut(s) 188, 467
TspGWI ACGGA 1 cut(s) 1510
TspRI CASTG 4 cut(s) 193, 821, 1761, 1817
Van91I CCANNNNNTGG 2 cut(s) 391, 1248
VpaK11BI GGWCC 1 cut(s) 911
XbaI TCTAGA 1 cut(s) 2021
XceI RCATGY 2 cut(s) 620, 1158
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 7 cut(s) 438, 477, 590, 905, 1175, 1292, 2022
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.