Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004961

Physical Location & Seq

Genomic Coordinates Reverse (-)

17688392 .. 17690957

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18870.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGCTGATTTATTTGGTTGTGCTATTGTGCTTTGTTTCTACATGCTACAGACGATTTCCAGTTCCACAGAGGAGTGTCAGAGAGATGGATGGGAGTGAAATTACTGAAGGAGGTGAAAATATTCAACCTTCTTCTCTTTCAATTGTTGGCATTGCTGTCAGTGGGGACAGAAATAGCAAATACATAGTTAGGTGGGCTCTGGATAAGTTTGTTCCGGAGGGAAATGTTTTCTTCAAGTTGATTCATGTCCGGGAAAGGATCACCGGAGTTCCAACACCTATGGGAAGTCTGATTCCTATTTCGCAAGTACGAGAGGACGTAGTAGCTGCCTATCGAAAGGAAATGGAGTGGCAGGCGAGTGAAATGCTTGTTCCATACAAGAAAATGTGTGCTTATAGGAAGGTGCAAGTAGAAGTTGCACTAGTTGAATCAGATGACGTTGCAAATGCAATAGCAGAAGAGGTTGCTAAGTTCGCTATAAGCAATCTCGTCATAGGTGCCCCATCTCGTGGCATGTTTAAAAGGAAACAAAGGGGACTCTCCTTAAAAATCTCAGCCTGCACTCCAAGATTTTGCACCGTATATGCTGTTTCAAAAGGAAAGTTGTCATCCCTACGCGCATCTGATTCTTCGGTAGGAAGCATCAAAGATGACAACAGTGACACATGTTCTATCAGCAGTTCTTTGAGTTACACGTCTAGTTTACAGACAGGCACAGATCACAGCTCGGTTGGTTCATACTCTCATTTCCATTCTCCTCCTCTGACAATGCAGCGCTTTCAAGCTCTTACAAATATCAACAACACCCTTCTTCGTACAAAGACAAATTCAAATGACACCATCGATTCTAGATGCCAATCTCAGGATCTTGGAAGCTTTGTTGCAGATAGCCGGTCATGGACTTCAGATCAAGTGTCCAACTCAGACGTGGTTACAGATTATTCGTTGGAGAGGCAGGCGACTATGAACCTCGAGATAGAAAAGCTGAGAATTGAACTCAGACATGTCAAAGCAATGTATGCAATGGTTCAAAGTGAGAATATGGATGCTTCTAGGAAGATAAACAATTTAAATAAACGCTGGGTGGAGGAAGCAGTAAGGTTCAAGGAGATAAATTCTATGGAAGAGAAAGCCAAAGTATTTGCAACACAAGAAAAGGAGAAGTATGAATCTGCTAAGAGGGAAGCTGATTACATGAGAGAATGTGTCGAAAGAGAAGTTTCACTAAGGAGAGAAGCAGAGATGAAAGCCATGCTTGATGCCAAGGAGAACGAAAAACTTGAACATGCACTTGTAAGTCCTGTGCAACAATACCAGAAGTTCTCGTGGGATGAGATTGTTACAGCCACCTCATCTTTCTCCGAGGATCATAAGATTGGAATGGGTGCGTACGGAAATGTCTATAAATGCATCTTTCATCATACAACTGCAGCAGTGAAAGTCCTTCACTCTAAAGAGAATCACCAAACTAAGCAATTCCAGCAGGAGCTTGAGATCGTTGAGCAAAATCCGCCATCCCCATTTGCTTCTCCTTCTCGGTGCATGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr U-box Usp

Protein Analysis

517

Amino Acids

58.26

Weight (kDa)

7.56

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25160 AT5G61550 AT5G61550 AT5G61550 AT5G61550
fragaria_vesca	FvH4_7g27030
malus_domestica	MD01G1177900.v1.1 MD07G1249700.v1.1
prunus_persica	Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1
pyrus_communis	pycom01g18870 pycom07g22310
rosa_chinensis	RchiOBHm_Chr1g0373831
rosa_laevigata	RLG00000026802
rosa_multiflora	Rmu_sc0013735.1_g000010 Rmu_ssc0000206.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283970
rosa_rugosa	Rorug01G0379500
rosa_samantha	Rh1AG389100 Rh1BG353300 Rh1CG366600 Rh1DG384300
rosa_wichuraiana	Rw1G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccII	CGCG	1 cut(s)	618
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	1 cut(s)	1511
AclWI	GGATC	3 cut(s)	266, 873, 1374
AcsI	RAATTY	2 cut(s)	826, 1114
AcuI	CTGAAG	2 cut(s)	126, 888
AfaI	GTAC	3 cut(s)	309, 817, 1391
AfeI	AGCGCT	1 cut(s)	776
AfiI	CCNNNNNNNGG	2 cut(s)	509, 862
AflIII	ACRYGT	3 cut(s)	665, 693, 1003
AhlI	ACTAGT	1 cut(s)	421
AjiI	CACGTC	2 cut(s)	696, 928
AluBI	AGCT	7 cut(s)	326, 726, 785, 876, 985, 1187, 1489
AluI	AGCT	7 cut(s)	326, 726, 785, 876, 985, 1187, 1489
AlwI	GGATC	3 cut(s)	266, 873, 1374
Ama87I	CYCGRG	1 cut(s)	971
Aor13HI	TCCGGA	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	776
ApeKI	GCWGC	3 cut(s)	326, 772, 1430
ApoI	RAATTY	2 cut(s)	826, 1114
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	620, 777
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	125, 253, 1454
AvaI	CYCGRG	1 cut(s)	971
BaeGI	GKGCMC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	2 cut(s)	507, 1324
BbvI	GCAGC	3 cut(s)	313, 784, 1442
BccI	CCATC	5 cut(s)	79, 83, 511, 848, 1522
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BcnI	CCSGG	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	4 cut(s)	422, 699, 849, 1053
BfmI	CTRYAG	2 cut(s)	46, 1428
BfoI	RGCGCY	1 cut(s)	778
BisI	GCNGC	3 cut(s)	327, 773, 1431
BlsI	GCNGC	3 cut(s)	328, 774, 1432
Bme1390I	CCNGG	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	971
BmgBI	CACGTC	2 cut(s)	696, 928
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	6 cut(s)	629, 651, 842, 1036, 1249, 1419
BpuEI	CTTGAG	1 cut(s)	1511
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	843
BsaBI	GATNNNNATC	1 cut(s)	856
BsaJI	CCNNGG	2 cut(s)	1263, 1362
BsaWI	WCCGGW	2 cut(s)	214, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 862
Bse118I	RCCGGY	1 cut(s)	891
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	3 cut(s)	150, 1020, 1029
Bse8I	GATNNNNATC	1 cut(s)	856
BseAI	TCCGGA	1 cut(s)	214
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	1263, 1362
BseGI	GGATG	5 cut(s)	94, 608, 1051, 1336, 1514
BseJI	GATNNNNATC	1 cut(s)	856
BseLI	CCNNNNNNNGG	2 cut(s)	509, 862
BseMI	GCAATG	3 cut(s)	150, 1020, 1029
BseMII	CTCAG	5 cut(s)	567, 875, 936, 977, 1012
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	3 cut(s)	85, 747, 750
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	3 cut(s)	313, 784, 1442
BseYI	CCCAGC	1 cut(s)	1080
BsgI	GTGCAG	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	618
BshNI	GGYRCC	1 cut(s)	497
BshVI	ATCGAT	1 cut(s)	843
BsiHKCI	CYCGRG	1 cut(s)	971
BsiSI	CCGG	4 cut(s)	215, 250, 264, 892
BsiWI	CGTACG	1 cut(s)	1389
BslFI	GGGAC	2 cut(s)	179, 549
BslI	CCNNNNNNNGG	2 cut(s)	509, 862
BsmFI	GGGAC	2 cut(s)	179, 549
BsoBI	CYCGRG	1 cut(s)	971
Bsp1286I	GDGCHC	2 cut(s)	199, 502
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	258, 718, 865, 907, 1366, 1494
BspACI	CCGC	1 cut(s)	1511
BspCNI	CTCAG	5 cut(s)	566, 874, 935, 978, 1011
BspDI	ATCGAT	1 cut(s)	843
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	499
BspMAI	CTGCAG	1 cut(s)	1432
BspPI	GGATC	3 cut(s)	266, 873, 1374
BspT107I	GGYRCC	1 cut(s)	497
BsrDI	GCAATG	3 cut(s)	150, 1020, 1029
BsrFI	RCCGGY	1 cut(s)	891
BsrI	ACTGG	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	891
BssECI	CCNNGG	2 cut(s)	1263, 1362
BssMI	GATC	6 cut(s)	258, 718, 865, 907, 1366, 1494
BssSI	CACGAG	2 cut(s)	507, 1324
BssT1I	CCWWGG	1 cut(s)	1263
Bst2BI	CACGAG	2 cut(s)	507, 1324
Bst4CI	ACNGT	2 cut(s)	580, 659
Bst6I	CTCTTC	2 cut(s)	453, 1119
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	354, 559, 957
BstDEI	CTNAG	9 cut(s)	468, 553, 861, 922, 986, 998, 1176, 1226, 1470
BstF5I	GGATG	5 cut(s)	94, 608, 1051, 1336, 1514
BstFNI	CGCG	1 cut(s)	618
BstH2I	RGCGCY	1 cut(s)	778
BstHHI	GCGC	2 cut(s)	620, 777
BstKTI	GATC	6 cut(s)	261, 721, 868, 910, 1369, 1497
BstMBI	GATC	6 cut(s)	258, 718, 865, 907, 1366, 1494
BstMWI	GCNNNNNNNGC	4 cut(s)	473, 1019, 1480, 1510
BstNSI	RCATGY	6 cut(s)	45, 517, 669, 1007, 1289, 1546
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	2 cut(s)	46, 1428
BstSLI	GKGCMC	1 cut(s)	502
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	313, 784, 1442
BstX2I	RGATCY	1 cut(s)	865
BstYI	RGATCY	1 cut(s)	865
Bsu15I	ATCGAT	1 cut(s)	843
BsuTUI	ATCGAT	1 cut(s)	843
BtrI	CACGTC	2 cut(s)	696, 928
BtsCI	GGATG	5 cut(s)	94, 608, 1051, 1336, 1514
BtsI	GCAGTG	1 cut(s)	1440
BtsIMutI	CAGTG	3 cut(s)	166, 664, 1440
Cac8I	GCNNGC	3 cut(s)	354, 559, 957
CfoI	GCGC	2 cut(s)	620, 777
Cfr10I	RCCGGY	1 cut(s)	891
ClaI	ATCGAT	1 cut(s)	843
Csp6I	GTAC	3 cut(s)	308, 816, 1390
CviQI	GTAC	3 cut(s)	308, 816, 1390
DdeI	CTNAG	9 cut(s)	468, 553, 861, 922, 986, 998, 1176, 1226, 1470
DpnI	GATC	6 cut(s)	260, 720, 867, 909, 1368, 1496
DpnII	GATC	6 cut(s)	258, 718, 865, 907, 1366, 1494
DraI	TTTAAA	2 cut(s)	520, 1071
Eam1104I	CTCTTC	2 cut(s)	453, 1119
EarI	CTCTTC	2 cut(s)	453, 1119
EciI	GGCGGA	1 cut(s)	1500
Eco130I	CCWWGG	1 cut(s)	1263
Eco24I	GRGCYC	1 cut(s)	199
Eco47III	AGCGCT	1 cut(s)	776
Eco57I	CTGAAG	2 cut(s)	126, 888
Eco88I	CYCGRG	1 cut(s)	971
EcoT14I	CCWWGG	1 cut(s)	1263
EcoT22I	ATGCAT	1 cut(s)	1412
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	1263
FalI	AAGNNNNNCTT	2 cut(s)	1239, 1271
FaqI	GGGAC	2 cut(s)	179, 549
Fnu4HI	GCNGC	3 cut(s)	327, 773, 1431
FokI	GGATG	5 cut(s)	101, 595, 1058, 1343, 1501
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	327, 773, 1431
FspBI	CTAG	4 cut(s)	422, 699, 849, 1053
GlaI	GCGC	2 cut(s)	619, 776
GluI	GCNGC	3 cut(s)	327, 773, 1431
GsaI	CCCAGC	1 cut(s)	1084
HaeII	RGCGCY	1 cut(s)	778
HapII	CCGG	4 cut(s)	215, 250, 264, 892
HhaI	GCGC	2 cut(s)	620, 777
Hin6I	GCGC	2 cut(s)	618, 775
HinP1I	GCGC	2 cut(s)	618, 775
HindIII	AAGCTT	1 cut(s)	874
HinfI	GANTC	8 cut(s)	241, 292, 428, 537, 626, 845, 1169, 1459
HpaII	CCGG	4 cut(s)	215, 250, 264, 892
HphI	GGTGA	3 cut(s)	125, 253, 1454
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	9 cut(s)	80, 291, 433, 625, 765, 907, 925, 1001, 1363
Hpy188III	TCNNGA	6 cut(s)	200, 215, 849, 863, 973, 1548
Hpy8I	GTNNAC	1 cut(s)	704
HpyAV	CCTTC	6 cut(s)	101, 138, 394, 818, 1454, 1542
HpyCH4III	ACNGT	2 cut(s)	580, 659
HpyCH4IV	ACGT	4 cut(s)	318, 438, 695, 927
HpyF10VI	GCNNNNNNNGC	4 cut(s)	473, 1019, 1480, 1510
HpyF3I	CTNAG	9 cut(s)	468, 553, 861, 922, 986, 998, 1176, 1226, 1470
HpySE526I	ACGT	4 cut(s)	318, 438, 695, 927
HspAI	GCGC	2 cut(s)	618, 775
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	258, 718, 865, 907, 1366, 1494
LmnI	GCTCC	1 cut(s)	1486
Lsp1109I	GCAGC	3 cut(s)	313, 784, 1442
LweI	GCATC	6 cut(s)	629, 651, 842, 1036, 1249, 1419
MaeI	CTAG	4 cut(s)	422, 699, 849, 1053
MaeII	ACGT	4 cut(s)	318, 438, 695, 927
MaeIII	GTNAC	4 cut(s)	659, 689, 931, 1339
MalI	GATC	6 cut(s)	260, 720, 867, 909, 1368, 1496
MboI	GATC	6 cut(s)	258, 718, 865, 907, 1366, 1494
MboII	GAAGA	7 cut(s)	123, 223, 470, 621, 803, 1069, 1136
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	865
MhlI	GDGCHC	2 cut(s)	199, 502
MluCI	AATT	7 cut(s)	99, 141, 826, 990, 1066, 1114, 1475
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	3 cut(s)	296, 927, 942
Mph1103I	ATGCAT	1 cut(s)	1412
MroI	TCCGGA	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	519, 545, 1070
MspI	CCGG	4 cut(s)	215, 250, 264, 892
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	4 cut(s)	473, 1019, 1480, 1510
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	6 cut(s)	258, 718, 865, 907, 1366, 1494
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	1412
NspI	RCATGY	6 cut(s)	45, 517, 669, 1007, 1289, 1546
PaeR7I	CTCGAG	1 cut(s)	971
PciI	ACATGT	2 cut(s)	665, 1003
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	7 cut(s)	241, 292, 428, 626, 845, 1169, 1459
Pfl23II	CGTACG	1 cut(s)	1389
PflMI	CCANNNNNTGG	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	328, 774, 1432
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
PscI	ACATGT	2 cut(s)	665, 1003
PspFI	CCCAGC	1 cut(s)	1080
PspLI	CGTACG	1 cut(s)	1389
PspN4I	GGNNCC	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	1432
PsuI	RGATCY	1 cut(s)	865
RsaI	GTAC	3 cut(s)	309, 817, 1391
RsaNI	GTAC	3 cut(s)	308, 816, 1390
SaqAI	TTAA	3 cut(s)	519, 545, 1070
SatI	GCNGC	3 cut(s)	327, 773, 1431
Sau3AI	GATC	6 cut(s)	258, 718, 865, 907, 1366, 1494
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	199, 502
SfaNI	GCATC	6 cut(s)	629, 651, 842, 1036, 1249, 1419
SfcI	CTRYAG	2 cut(s)	46, 1428
Sfr274I	CTCGAG	1 cut(s)	971
SlaI	CTCGAG	1 cut(s)	971
SmiI	ATTTAAAT	1 cut(s)	1071
SmlI	CTYRAG	2 cut(s)	971, 1490
SmoI	CTYRAG	2 cut(s)	971, 1490
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	7 cut(s)	99, 141, 826, 990, 1066, 1114, 1475
SsiI	CCGC	1 cut(s)	1511
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	4 cut(s)	422, 699, 849, 1053
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	1263
SwaI	ATTTAAAT	1 cut(s)	1071
TaaI	ACNGT	2 cut(s)	580, 659
TaiI	ACGT	4 cut(s)	321, 441, 698, 930
TaqI	TCGA	4 cut(s)	334, 843, 972, 1209
TasI	AATT	7 cut(s)	99, 141, 826, 990, 1066, 1114, 1475
TfiI	GAWTC	7 cut(s)	241, 292, 428, 626, 845, 1169, 1459
Tru1I	TTAA	3 cut(s)	519, 545, 1070
Tru9I	TTAA	3 cut(s)	519, 545, 1070
TscAI	CASTG	3 cut(s)	166, 664, 1440
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	3 cut(s)	326, 772, 1430
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	6 cut(s)	233, 726, 980, 1182, 1259, 1406
TspGWI	ACGGA	1 cut(s)	1407
TspRI	CASTG	3 cut(s)	166, 664, 1440
Van91I	CCANNNNNTGG	1 cut(s)	509
XapI	RAATTY	2 cut(s)	826, 1114
XbaI	TCTAGA	1 cut(s)	848
XceI	RCATGY	6 cut(s)	45, 517, 669, 1007, 1289, 1546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XhoI	CTCGAG	1 cut(s)	971
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	4 cut(s)	422, 699, 849, 1053
Zsp2I	ATGCAT	1 cut(s)	1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.