U-box domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25160 AT5G61550 AT5G61550 AT5G61550 AT5G61550 |
| fragaria_vesca | FvH4_7g27030 |
| malus_domestica | MD01G1177900.v1.1 MD07G1249700.v1.1 |
| prunus_persica | Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 |
| pyrus_communis | pycom01g18870 pycom07g22310 |
| rosa_chinensis | RchiOBHm_Chr1g0373831 |
| rosa_laevigata | RLG00000026802 |
| rosa_multiflora | Rmu_sc0013735.1_g000010 Rmu_ssc0000206.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00283970 |
| rosa_rugosa | Rorug01G0379500 |
| rosa_samantha | Rh1AG389100 Rh1BG353300 Rh1CG366600 Rh1DG384300 |
| rosa_wichuraiana | Rw1G034610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 52, 425 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 437, 1990 |
| AccII | CGCG | 2 cut(s) | 546, 1397 |
| AciI | CCGC | 5 cut(s) | 50, 383, 1519, 2212, 2279 |
| AclWI | GGATC | 5 cut(s) | 804, 1383, 1498, 2027, 2040 |
| AcoI | YGGCCR | 1 cut(s) | 2051 |
| AcsI | RAATTY | 4 cut(s) | 757, 1123, 2014, 2350 |
| AfaI | GTAC | 7 cut(s) | 237, 543, 748, 1299, 1400, 1583, 1630 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 437, 793, 1096, 1990, 2042 |
| AflII | CTTAAG | 1 cut(s) | 2246 |
| AflIII | ACRYGT | 3 cut(s) | 172, 596, 1012 |
| AjiI | CACGTC | 2 cut(s) | 367, 937 |
| AjnI | CCWGG | 3 cut(s) | 963, 1599, 2420 |
| Alw21I | GWGCWC | 1 cut(s) | 322 |
| Alw26I | GTCTC | 5 cut(s) | 1040, 2057, 2109, 2152, 2306 |
| AlwI | GGATC | 5 cut(s) | 804, 1383, 1498, 2027, 2040 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1853, 1954 |
| AoxI | GGCC | 3 cut(s) | 1792, 1850, 2051 |
| ApeKI | GCWGC | 7 cut(s) | 254, 489, 703, 1181, 1315, 1439, 2276 |
| ApoI | RAATTY | 4 cut(s) | 757, 1123, 2014, 2350 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 771 |
| AspLEI | GCGC | 3 cut(s) | 180, 548, 1397 |
| AspS9I | GGNCC | 2 cut(s) | 1307, 1850 |
| AsuC2I | CCSGG | 1 cut(s) | 1880 |
| AsuHPI | GGTGA | 2 cut(s) | 1796, 1951 |
| AvaII | GGWCC | 1 cut(s) | 1307 |
| BaeGI | GKGCMC | 1 cut(s) | 430 |
| BalI | TGGCCA | 1 cut(s) | 2053 |
| BamHI | GGATCC | 1 cut(s) | 2032 |
| BanI | GGYRCC | 2 cut(s) | 52, 425 |
| BanII | GRGCYC | 1 cut(s) | 127 |
| BauI | CACGAG | 1 cut(s) | 435 |
| BbsI | GAAGAC | 1 cut(s) | 249 |
| Bbv12I | GWGCWC | 1 cut(s) | 322 |
| BbvI | GCAGC | 7 cut(s) | 241, 501, 715, 1168, 1327, 1451, 2263 |
| BccI | CCATC | 7 cut(s) | 114, 439, 809, 1530, 1734, 1992, 2276 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 548, 582 |
| BciT130I | CCWGG | 3 cut(s) | 965, 1601, 2422 |
| BclI | TGATCA | 2 cut(s) | 916, 1759 |
| BcnI | CCSGG | 1 cut(s) | 1880 |
| BcoDI | GTCTC | 5 cut(s) | 1040, 2057, 2109, 2152, 2306 |
| BfaI | CTAG | 5 cut(s) | 780, 873, 986, 1062, 1571 |
| BfmI | CTRYAG | 1 cut(s) | 1437 |
| BfrI | CTTAAG | 1 cut(s) | 2246 |
| BisI | GCNGC | 9 cut(s) | 51, 255, 490, 704, 1182, 1316, 1440, 2212, 2277 |
| BlsI | GCNGC | 9 cut(s) | 52, 256, 491, 705, 1183, 1317, 1441, 2213, 2278 |
| Bme1390I | CCNGG | 4 cut(s) | 965, 1601, 1880, 2422 |
| Bme18I | GGWCC | 1 cut(s) | 1307 |
| BmgBI | CACGTC | 2 cut(s) | 367, 937 |
| BmgT120I | GGNCC | 2 cut(s) | 1307, 1850 |
| BmiI | GGNNCC | 5 cut(s) | 54, 427, 1658, 2034, 2265 |
| BmrFI | CCNGG | 4 cut(s) | 965, 1601, 1880, 2422 |
| BmrI | ACTGGG | 1 cut(s) | 1905 |
| BmsI | GCATC | 5 cut(s) | 557, 635, 773, 1045, 1258 |
| BmuI | ACTGGG | 1 cut(s) | 1905 |
| BpiI | GAAGAC | 1 cut(s) | 249 |
| BpmI | CTGGAG | 5 cut(s) | 149, 213, 1601, 1622, 2174 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1508 |
| BpuEI | CTTGAG | 3 cut(s) | 821, 1097, 1520 |
| BpuMI | CCSGG | 1 cut(s) | 1880 |
| BsaBI | GATNNNNATC | 1 cut(s) | 787 |
| BsaJI | CCNNGG | 4 cut(s) | 182, 1272, 1643, 2421 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1595, 1625, 2402, 2432 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 437, 793, 1096, 1990, 2042 |
| Bse1I | ACTGG | 3 cut(s) | 196, 1830, 1900 |
| Bse3DI | GCAATG | 3 cut(s) | 78, 1038, 2357 |
| Bse8I | GATNNNNATC | 1 cut(s) | 787 |
| BseBI | CCWGG | 3 cut(s) | 965, 1601, 2422 |
| BseDI | CCNNGG | 4 cut(s) | 182, 1272, 1643, 2421 |
| BseGI | GGATG | 9 cut(s) | 10, 626, 820, 1345, 1522, 1722, 2029, 2257, 2287 |
| BseJI | GATNNNNATC | 1 cut(s) | 787 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 437, 793, 1096, 1990, 2042 |
| BseMI | GCAATG | 3 cut(s) | 78, 1038, 2357 |
| BseNI | ACTGG | 3 cut(s) | 196, 1830, 1900 |
| BseRI | GAGGAG | 3 cut(s) | 401, 1148, 1289 |
| BseSI | GKGCMC | 1 cut(s) | 430 |
| BseXI | GCAGC | 7 cut(s) | 241, 501, 715, 1168, 1327, 1451, 2263 |
| BseYI | CCCAGC | 2 cut(s) | 833, 2042 |
| BsgI | GTGCAG | 2 cut(s) | 1334, 2118 |
| Bsh1236I | CGCG | 2 cut(s) | 546, 1397 |
| BshFI | GGCC | 3 cut(s) | 1794, 1852, 2053 |
| BshNI | GGYRCC | 2 cut(s) | 52, 425 |
| BsiHKAI | GWGCWC | 1 cut(s) | 322 |
| BsiSI | CCGG | 2 cut(s) | 630, 1880 |
| BsiWI | CGTACG | 1 cut(s) | 1398 |
| BslFI | GGGAC | 3 cut(s) | 477, 816, 1873 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 437, 793, 1096, 1990, 2042 |
| BsmAI | GTCTC | 5 cut(s) | 1040, 2057, 2109, 2152, 2306 |
| BsmBI | CGTCTC | 1 cut(s) | 2057 |
| BsmFI | GGGAC | 3 cut(s) | 477, 816, 1873 |
| BsnI | GGCC | 3 cut(s) | 1794, 1852, 2053 |
| Bsp1286I | GDGCHC | 3 cut(s) | 127, 322, 430 |
| BspACI | CCGC | 5 cut(s) | 50, 383, 1519, 2212, 2279 |
| BspANI | GGCC | 3 cut(s) | 1794, 1852, 2053 |
| BspFNI | CGCG | 2 cut(s) | 546, 1397 |
| BspLI | GGNNCC | 5 cut(s) | 54, 427, 1658, 2034, 2265 |
| BspMAI | CTGCAG | 1 cut(s) | 1441 |
| BspPI | GGATC | 5 cut(s) | 804, 1383, 1498, 2027, 2040 |
| BspT107I | GGYRCC | 2 cut(s) | 52, 425 |
| BspTI | CTTAAG | 1 cut(s) | 2246 |
| BsrDI | GCAATG | 3 cut(s) | 78, 1038, 2357 |
| BsrI | ACTGG | 3 cut(s) | 196, 1830, 1900 |
| BssECI | CCNNGG | 4 cut(s) | 182, 1272, 1643, 2421 |
| BssSI | CACGAG | 1 cut(s) | 435 |
| BssT1I | CCWWGG | 2 cut(s) | 182, 1643 |
| Bst2BI | CACGAG | 1 cut(s) | 435 |
| Bst2UI | CCWGG | 3 cut(s) | 965, 1601, 2422 |
| Bst4CI | ACNGT | 7 cut(s) | 468, 611, 1408, 1565, 1595, 1628, 2203 |
| Bst6I | CTCTTC | 2 cut(s) | 2055, 2397 |
| BstAFI | CTTAAG | 1 cut(s) | 2246 |
| BstC8I | GCNNGC | 3 cut(s) | 282, 487, 571 |
| BstF5I | GGATG | 9 cut(s) | 10, 626, 820, 1345, 1522, 1722, 2029, 2257, 2287 |
| BstFNI | CGCG | 2 cut(s) | 546, 1397 |
| BstHHI | GCGC | 3 cut(s) | 180, 548, 1397 |
| BstMAI | GTCTC | 5 cut(s) | 1040, 2057, 2109, 2152, 2306 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 47, 401, 991, 1489, 1518, 1967, 2180 |
| BstNI | CCWGG | 3 cut(s) | 965, 1601, 2422 |
| BstNSI | RCATGY | 5 cut(s) | 176, 445, 600, 1016, 1554 |
| BstSCI | CCNGG | 4 cut(s) | 963, 1599, 1878, 2420 |
| BstSFI | CTRYAG | 1 cut(s) | 1437 |
| BstSLI | GKGCMC | 1 cut(s) | 430 |
| BstUI | CGCG | 2 cut(s) | 546, 1397 |
| BstV1I | GCAGC | 7 cut(s) | 241, 501, 715, 1168, 1327, 1451, 2263 |
| BstV2I | GAAGAC | 1 cut(s) | 249 |
| BstX2I | RGATCY | 4 cut(s) | 796, 1375, 1503, 2032 |
| BstYI | RGATCY | 4 cut(s) | 796, 1375, 1503, 2032 |
| BsuRI | GGCC | 3 cut(s) | 1794, 1852, 2053 |
| BtrI | CACGTC | 2 cut(s) | 367, 937 |
| BtsCI | GGATG | 9 cut(s) | 10, 626, 820, 1345, 1522, 1722, 2029, 2257, 2287 |
| BtsI | GCAGTG | 2 cut(s) | 40, 1449 |
| BtsIMutI | CAGTG | 3 cut(s) | 40, 1449, 2213 |
| Cac8I | GCNNGC | 3 cut(s) | 282, 487, 571 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1853, 1954 |
| CfoI | GCGC | 3 cut(s) | 180, 548, 1397 |
| Cfr13I | GGNCC | 2 cut(s) | 1307, 1850 |
| CseI | GACGC | 2 cut(s) | 912, 2118 |
| Csp6I | GTAC | 7 cut(s) | 236, 542, 747, 1298, 1399, 1582, 1629 |
| CviQI | GTAC | 7 cut(s) | 236, 542, 747, 1298, 1399, 1582, 1629 |
| DraI | TTTAAA | 2 cut(s) | 448, 1080 |
| EaeI | YGGCCR | 1 cut(s) | 2051 |
| Eam1104I | CTCTTC | 2 cut(s) | 2055, 2397 |
| EarI | CTCTTC | 2 cut(s) | 2055, 2397 |
| EciI | GGCGGA | 1 cut(s) | 1508 |
| Eco130I | CCWWGG | 2 cut(s) | 182, 1643 |
| Eco24I | GRGCYC | 1 cut(s) | 127 |
| Eco47I | GGWCC | 1 cut(s) | 1307 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1307, 1850 |
| EcoRII | CCWGG | 3 cut(s) | 963, 1599, 2420 |
| EcoT14I | CCWWGG | 2 cut(s) | 182, 1643 |
| EcoT22I | ATGCAT | 2 cut(s) | 628, 1266 |
| EcoT38I | GRGCYC | 1 cut(s) | 127 |
| ErhI | CCWWGG | 2 cut(s) | 182, 1643 |
| Esp3I | CGTCTC | 1 cut(s) | 2057 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1272, 1304 |
| FaqI | GGGAC | 3 cut(s) | 477, 816, 1873 |
| FbaI | TGATCA | 2 cut(s) | 916, 1759 |
| Fnu4HI | GCNGC | 9 cut(s) | 51, 255, 490, 704, 1182, 1316, 1440, 2212, 2277 |
| FokI | GGATG | 9 cut(s) | 17, 613, 827, 1352, 1509, 1709, 2036, 2264, 2294 |
| FriOI | GRGCYC | 1 cut(s) | 127 |
| Fsp4HI | GCNGC | 9 cut(s) | 51, 255, 490, 704, 1182, 1316, 1440, 2212, 2277 |
| FspBI | CTAG | 5 cut(s) | 780, 873, 986, 1062, 1571 |
| GlaI | GCGC | 3 cut(s) | 179, 547, 1396 |
| GluI | GCNGC | 9 cut(s) | 51, 255, 490, 704, 1182, 1316, 1440, 2212, 2277 |
| GsaI | CCCAGC | 2 cut(s) | 837, 2046 |
| GsuI | CTGGAG | 5 cut(s) | 149, 213, 1601, 1622, 2174 |
| HaeIII | GGCC | 3 cut(s) | 1794, 1852, 2053 |
| HapII | CCGG | 2 cut(s) | 630, 1880 |
| HgaI | GACGC | 2 cut(s) | 912, 2118 |
| HhaI | GCGC | 3 cut(s) | 180, 548, 1397 |
| Hin6I | GCGC | 3 cut(s) | 178, 546, 1395 |
| HinP1I | GCGC | 3 cut(s) | 178, 546, 1395 |
| HindIII | AAGCTT | 2 cut(s) | 883, 1286 |
| HpaII | CCGG | 2 cut(s) | 630, 1880 |
| HphI | GGTGA | 2 cut(s) | 1796, 1951 |
| Hpy166II | GTNNAC | 3 cut(s) | 927, 1298, 1631 |
| Hpy8I | GTNNAC | 3 cut(s) | 927, 1298, 1631 |
| Hpy99I | CGWCG | 2 cut(s) | 368, 2112 |
| HpyCH4III | ACNGT | 7 cut(s) | 468, 611, 1408, 1565, 1595, 1628, 2203 |
| HpyCH4IV | ACGT | 4 cut(s) | 246, 366, 936, 1788 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 47, 401, 991, 1489, 1518, 1967, 2180 |
| HpySE526I | ACGT | 4 cut(s) | 246, 366, 936, 1788 |
| HspAI | GCGC | 3 cut(s) | 178, 546, 1395 |
| Ksp22I | TGATCA | 2 cut(s) | 916, 1759 |
| LmnI | GCTCC | 3 cut(s) | 982, 1495, 1620 |
| Lsp1109I | GCAGC | 7 cut(s) | 241, 501, 715, 1168, 1327, 1451, 2263 |
| LweI | GCATC | 5 cut(s) | 557, 635, 773, 1045, 1258 |
| MaeI | CTAG | 5 cut(s) | 780, 873, 986, 1062, 1571 |
| MaeII | ACGT | 4 cut(s) | 246, 366, 936, 1788 |
| MaeIII | GTNAC | 6 cut(s) | 228, 590, 940, 1348, 1784, 2285 |
| MfeI | CAATTG | 1 cut(s) | 69 |
| MflI | RGATCY | 4 cut(s) | 796, 1375, 1503, 2032 |
| MhlI | GDGCHC | 3 cut(s) | 127, 322, 430 |
| MlsI | TGGCCA | 1 cut(s) | 2053 |
| MluNI | TGGCCA | 1 cut(s) | 2053 |
| MlyI | GAGTC | 3 cut(s) | 569, 871, 1855 |
| MmeI | TCCRAC | 1 cut(s) | 224 |
| Mox20I | TGGCCA | 1 cut(s) | 2053 |
| Mph1103I | ATGCAT | 2 cut(s) | 628, 1266 |
| MroXI | GAANNNNTTC | 1 cut(s) | 771 |
| MscI | TGGCCA | 1 cut(s) | 2053 |
| MseI | TTAA | 6 cut(s) | 447, 1079, 1809, 1979, 2018, 2247 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| Msp20I | TGGCCA | 1 cut(s) | 2053 |
| MspCI | CTTAAG | 1 cut(s) | 2246 |
| MspI | CCGG | 2 cut(s) | 630, 1880 |
| MspR9I | CCNGG | 4 cut(s) | 965, 1601, 1880, 2422 |
| MunI | CAATTG | 1 cut(s) | 69 |
| MvaI | CCWGG | 3 cut(s) | 965, 1601, 2422 |
| MvnI | CGCG | 2 cut(s) | 546, 1397 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 47, 401, 991, 1489, 1518, 1967, 2180 |
| NciI | CCSGG | 1 cut(s) | 1880 |
| NlaIV | GGNNCC | 5 cut(s) | 54, 427, 1658, 2034, 2265 |
| NmeAIII | GCCGAG | 1 cut(s) | 1297 |
| NmuCI | GTSAC | 3 cut(s) | 228, 590, 1784 |
| NsiI | ATGCAT | 2 cut(s) | 628, 1266 |
| NspI | RCATGY | 5 cut(s) | 176, 445, 600, 1016, 1554 |
| PciI | ACATGT | 3 cut(s) | 172, 596, 1012 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2345 |
| PdmI | GAANNNNTTC | 1 cut(s) | 771 |
| PfeI | GAWTC | 7 cut(s) | 220, 356, 554, 1468, 2189, 2320, 2371 |
| Pfl23II | CGTACG | 1 cut(s) | 1398 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 437, 1990 |
| PkrI | GCNGC | 9 cut(s) | 52, 256, 491, 705, 1183, 1317, 1441, 2213, 2278 |
| PleI | GAGTC | 3 cut(s) | 568, 870, 1855 |
| PpsI | GAGTC | 3 cut(s) | 568, 870, 1855 |
| PpuMI | RGGWCCY | 1 cut(s) | 1307 |
| PscI | ACATGT | 3 cut(s) | 172, 596, 1012 |
| Psp5II | RGGWCCY | 1 cut(s) | 1307 |
| Psp6I | CCWGG | 3 cut(s) | 963, 1599, 2420 |
| PspFI | CCCAGC | 2 cut(s) | 833, 2042 |
| PspGI | CCWGG | 3 cut(s) | 963, 1599, 2420 |
| PspLI | CGTACG | 1 cut(s) | 1398 |
| PspN4I | GGNNCC | 5 cut(s) | 54, 427, 1658, 2034, 2265 |
| PspPI | GGNCC | 2 cut(s) | 1307, 1850 |
| PspPPI | RGGWCCY | 1 cut(s) | 1307 |
| PstI | CTGCAG | 1 cut(s) | 1441 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1853, 1954 |
| PsuI | RGATCY | 4 cut(s) | 796, 1375, 1503, 2032 |
| RsaI | GTAC | 7 cut(s) | 237, 543, 748, 1299, 1400, 1583, 1630 |
| RsaNI | GTAC | 7 cut(s) | 236, 542, 747, 1298, 1399, 1582, 1629 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SaqAI | TTAA | 6 cut(s) | 447, 1079, 1809, 1979, 2018, 2247 |
| SatI | GCNGC | 9 cut(s) | 51, 255, 490, 704, 1182, 1316, 1440, 2212, 2277 |
| Sau96I | GGNCC | 2 cut(s) | 1307, 1850 |
| SchI | GAGTC | 3 cut(s) | 569, 871, 1855 |
| ScrFI | CCNGG | 4 cut(s) | 965, 1601, 1880, 2422 |
| SduI | GDGCHC | 3 cut(s) | 127, 322, 430 |
| SfaNI | GCATC | 5 cut(s) | 557, 635, 773, 1045, 1258 |
| SfcI | CTRYAG | 1 cut(s) | 1437 |
| SinI | GGWCC | 1 cut(s) | 1307 |
| SmiI | ATTTAAAT | 1 cut(s) | 1080 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 4 cut(s) | 800, 1112, 1499, 2246 |
| SmoI | CTYRAG | 4 cut(s) | 800, 1112, 1499, 2246 |
| SsiI | CCGC | 5 cut(s) | 50, 383, 1519, 2212, 2279 |
| SspMI | CTAG | 5 cut(s) | 780, 873, 986, 1062, 1571 |
| StyD4I | CCNGG | 4 cut(s) | 963, 1599, 1878, 2420 |
| StyI | CCWWGG | 2 cut(s) | 182, 1643 |
| SwaI | ATTTAAAT | 1 cut(s) | 1080 |
| TaaI | ACNGT | 7 cut(s) | 468, 611, 1408, 1565, 1595, 1628, 2203 |
| TaiI | ACGT | 4 cut(s) | 249, 369, 939, 1791 |
| TaqI | TCGA | 1 cut(s) | 2107 |
| TaqII | GACCGA | 1 cut(s) | 891 |
| TatI | WGTACW | 4 cut(s) | 746, 1297, 1581, 1628 |
| TauI | GCSGC | 2 cut(s) | 53, 2214 |
| TfiI | GAWTC | 7 cut(s) | 220, 356, 554, 1468, 2189, 2320, 2371 |
| Tru1I | TTAA | 6 cut(s) | 447, 1079, 1809, 1979, 2018, 2247 |
| Tru9I | TTAA | 6 cut(s) | 447, 1079, 1809, 1979, 2018, 2247 |
| TscAI | CASTG | 3 cut(s) | 40, 1449, 2213 |
| TseFI | GTSAC | 3 cut(s) | 228, 590, 1784 |
| TseI | GCWGC | 7 cut(s) | 254, 489, 703, 1181, 1315, 1439, 2276 |
| Tsp45I | GTSAC | 3 cut(s) | 228, 590, 1784 |
| TspDTI | ATGAA | 9 cut(s) | 657, 764, 780, 942, 1191, 1268, 1321, 1415, 2221 |
| TspGWI | ACGGA | 2 cut(s) | 671, 1416 |
| TspRI | CASTG | 3 cut(s) | 40, 1449, 2213 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 437, 1990 |
| Vha464I | CTTAAG | 1 cut(s) | 2246 |
| VpaK11BI | GGWCC | 1 cut(s) | 1307 |
| XapI | RAATTY | 4 cut(s) | 757, 1123, 2014, 2350 |
| XbaI | TCTAGA | 1 cut(s) | 779 |
| XceI | RCATGY | 5 cut(s) | 176, 445, 600, 1016, 1554 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 934 |
| XmnI | GAANNNNTTC | 1 cut(s) | 771 |
| XspI | CTAG | 5 cut(s) | 780, 873, 986, 1062, 1571 |
| Zsp2I | ATGCAT | 2 cut(s) | 628, 1266 |