Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013735.1

Orthogroup ID

OG0004961

Physical Location & Seq

Genomic Coordinates Reverse (-)

41393 .. 42856

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013735.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgggtgcatatggaactgtttataagagcaacttccatcatacaactgcagcagtaaaagtccttcactctaaagagaatcaccaaactaagcaattcttgcaggagcttgaaatcttgagcaaaatccgacatccccatttgcttctcctccttggtgcatgccctgatcatagttgcctagtgtatgaatacatggaaaatggtagcttggatgacaggctgaaccagaaaaataacacaccccccattccttggtatgagaggtttcggattgcttgggaagtagcctcagctctagtctttcttcacagctcaaagcctaaaccaattatccatcgtgatctgaaaccagcaaacatcttgcttgatcataaccttgtgagcaagattggtgatgtcggcctttctacaatgcttaatttagacccttctatgtccagtatatacaatgagacaggccctgttgggacaatgtgttacatagaccccgagtatcaacggactggggtaatctctccaaaatcagacgtttatgctttgggaatggtgattttgcagttgctgactgcaaaacctgcaatagctataactcatctggtggaaacagctattcatggtaaaagtttgaaagatgttttagatcctaaagctgggtcttggccaatggaagaggcaaggcaattagctgaattgggattgagctgtgcagagcttcgacgtagggacagacctgacttgaaagagcaagtggttccagcactggagagattgaaaaaggttgccgataaagcaagagactcagcttccacagttcagtgcctacctcctaaccacttcatctgtccaattctcaaggatgtgatgaatgagccttgtgttgccgcggatggttacacttatgatcgcagggcaatagagaaatggcttgaagagaatgataactccccaatgacaaacttggctatgccaaacaagcacctaataccaaactacactcttctttctgcaattgtggagtggaagtctagaaaacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr U-box Usp

Protein Analysis

346

Amino Acids

38.99

Weight (kDa)

7.22

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25160 AT5G61550 AT5G61550 AT5G61550 AT5G61550
fragaria_vesca	FvH4_7g27030
malus_domestica	MD01G1177900.v1.1 MD07G1249700.v1.1
prunus_persica	Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1 Prupe.2G273400_v2.0.a1
pyrus_communis	pycom01g18870 pycom07g22310
rosa_chinensis	RchiOBHm_Chr1g0373831
rosa_laevigata	RLG00000026802
rosa_multiflora	Rmu_sc0013735.1_g000010 Rmu_ssc0000206.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283970
rosa_rugosa	Rorug01G0379500
rosa_samantha	Rh1AG389100 Rh1BG353300 Rh1CG366600 Rh1DG384300
rosa_wichuraiana	Rw1G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	586
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccII	CGCG	1 cut(s)	887
AciI	CCGC	2 cut(s)	885, 887
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	1 cut(s)	662
AfiI	CCNNNNNNNGG	2 cut(s)	255, 653
AgsI	TTSAA	5 cut(s)	113, 631, 742, 775, 932
Alw26I	GTCTC	2 cut(s)	449, 792
AlwI	GGATC	1 cut(s)	638
AlwNI	CAGNNNCTG	2 cut(s)	464, 565
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	3 cut(s)	403, 460, 662
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	74, 407, 562
AvaI	CYCGRG	1 cut(s)	491
BalI	TGGCCA	1 cut(s)	664
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
BbvCI	CCTCAGC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	45, 345, 884
BclI	TGATCA	2 cut(s)	169, 370
BcoDI	GTCTC	2 cut(s)	449, 792
BfaI	CTAG	3 cut(s)	182, 299, 1029
BfmI	CTRYAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	2 cut(s)	51, 885
BlsI	GCNGC	2 cut(s)	52, 886
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	756
BmrI	ACTGGG	1 cut(s)	516
BmuI	ACTGGG	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	292
BpuEI	CTTGAG	2 cut(s)	139, 839
BsaJI	CCNNGG	3 cut(s)	154, 254, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	1010, 1040
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 653
Bse1I	ACTGG	3 cut(s)	441, 511, 768
BseDI	CCNNGG	3 cut(s)	154, 254, 885
BseGI	GGATG	4 cut(s)	133, 220, 865, 895
BseLI	CCNNNNNNNGG	2 cut(s)	255, 653
BseMII	CTCAG	2 cut(s)	306, 816
BseNI	ACTGG	3 cut(s)	441, 511, 768
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	653
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	887
BshFI	GGCC	3 cut(s)	405, 462, 664
BsiHKCI	CYCGRG	1 cut(s)	491
BslFI	GGGAC	2 cut(s)	484, 740
BslI	CCNNNNNNNGG	2 cut(s)	255, 653
BsmAI	GTCTC	2 cut(s)	449, 792
BsmFI	GGGAC	2 cut(s)	484, 740
BsnI	GGCC	3 cut(s)	405, 462, 664
BsoBI	CYCGRG	1 cut(s)	491
Bsp143I	GATC	5 cut(s)	169, 343, 370, 643, 904
BspACI	CCGC	2 cut(s)	885, 887
BspANI	GGCC	3 cut(s)	405, 462, 664
BspCNI	CTCAG	2 cut(s)	305, 815
BspFNI	CGCG	1 cut(s)	887
BspLI	GGNNCC	1 cut(s)	756
BspMAI	CTGCAG	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	1 cut(s)	638
BsrI	ACTGG	3 cut(s)	441, 511, 768
BssECI	CCNNGG	3 cut(s)	154, 254, 885
BssMI	GATC	5 cut(s)	169, 343, 370, 643, 904
BssT1I	CCWWGG	2 cut(s)	154, 254
Bst4CI	ACNGT	3 cut(s)	19, 814, 1038
Bst6I	CTCTTC	3 cut(s)	666, 927, 1005
BstAPI	GCANNNNNTGC	2 cut(s)	100, 578
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	90, 292, 802
BstDSI	CCRYGG	1 cut(s)	885
BstF5I	GGATG	4 cut(s)	133, 220, 865, 895
BstFNI	CGCG	1 cut(s)	887
BstKTI	GATC	5 cut(s)	172, 346, 373, 646, 907
BstMAI	GTCTC	2 cut(s)	449, 792
BstMBI	GATC	5 cut(s)	169, 343, 370, 643, 904
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 578, 791, 976
BstNSI	RCATGY	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	887
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	3 cut(s)	405, 462, 664
BtgI	CCRYGG	1 cut(s)	885
BtsCI	GGATG	4 cut(s)	133, 220, 865, 895
BtsIMutI	CAGTG	2 cut(s)	761, 824
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	163
CaiI	CAGNNNCTG	2 cut(s)	464, 565
Cfr13I	GGNCC	1 cut(s)	461
Cfr42I	CCGCGG	1 cut(s)	888
CviAII	CATG	3 cut(s)	162, 196, 617
DdeI	CTNAG	3 cut(s)	90, 292, 802
DpnI	GATC	5 cut(s)	171, 345, 372, 645, 906
DpnII	GATC	5 cut(s)	169, 343, 370, 643, 904
EaeI	YGGCCR	1 cut(s)	662
Eam1104I	CTCTTC	3 cut(s)	666, 927, 1005
EarI	CTCTTC	3 cut(s)	666, 927, 1005
Eco130I	CCWWGG	2 cut(s)	154, 254
Eco88I	CYCGRG	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	461
EcoT14I	CCWWGG	2 cut(s)	154, 254
ErhI	CCWWGG	2 cut(s)	154, 254
FaeI	CATG	3 cut(s)	165, 199, 620
FalI	AAGNNNNNCTT	4 cut(s)	17, 49, 83, 115
FaqI	GGGAC	2 cut(s)	484, 740
FatI	CATG	3 cut(s)	161, 195, 616
FauNDI	CATATG	1 cut(s)	10
FbaI	TGATCA	2 cut(s)	169, 370
Fnu4HI	GCNGC	2 cut(s)	51, 885
FokI	GGATG	4 cut(s)	120, 227, 872, 902
Fsp4HI	GCNGC	2 cut(s)	51, 885
FspBI	CTAG	3 cut(s)	182, 299, 1029
GluI	GCNGC	2 cut(s)	51, 885
GsaI	CCCAGC	1 cut(s)	657
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	3 cut(s)	405, 462, 664
Hin1II	CATG	3 cut(s)	165, 199, 620
HinfI	GANTC	2 cut(s)	79, 800
HphI	GGTGA	3 cut(s)	74, 407, 562
Hpy188I	TCNGA	4 cut(s)	131, 273, 348, 529
Hpy188III	TCNNGA	3 cut(s)	118, 341, 1029
Hpy99I	CGWCG	1 cut(s)	723
HpyAV	CCTTC	2 cut(s)	74, 441
HpyCH4III	ACNGT	3 cut(s)	19, 814, 1038
HpyCH4IV	ACGT	2 cut(s)	531, 721
HpyCH4V	TGCA	9 cut(s)	8, 50, 103, 161, 559, 572, 581, 710, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 578, 791, 976
HpyF3I	CTNAG	3 cut(s)	90, 292, 802
HpySE526I	ACGT	2 cut(s)	531, 721
Hsp92II	CATG	3 cut(s)	165, 199, 620
Ksp22I	TGATCA	2 cut(s)	169, 370
KspI	CCGCGG	1 cut(s)	888
Kzo9I	GATC	5 cut(s)	169, 343, 370, 643, 904
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	3 cut(s)	182, 299, 1029
MaeII	ACGT	2 cut(s)	531, 721
MaeIII	GTNAC	2 cut(s)	479, 893
MalI	GATC	5 cut(s)	171, 345, 372, 645, 906
MboI	GATC	5 cut(s)	169, 343, 370, 643, 904
MboII	GAAGA	4 cut(s)	299, 683, 944, 992
MfeI	CAATTG	1 cut(s)	1011
MflI	RGATCY	1 cut(s)	643
MlsI	TGGCCA	1 cut(s)	664
MluCI	AATT	7 cut(s)	95, 330, 421, 683, 692, 849, 1011
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	161, 258, 301, 667, 837
Mox20I	TGGCCA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	664
MspA1I	CMGCKG	1 cut(s)	887
MunI	CAATTG	1 cut(s)	1011
MvnI	CGCG	1 cut(s)	887
MwoI	GCNNNNNNNGC	4 cut(s)	100, 578, 791, 976
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	5 cut(s)	169, 343, 370, 643, 904
NlaIII	CATG	3 cut(s)	165, 199, 620
NlaIV	GGNNCC	1 cut(s)	756
NspI	RCATGY	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	52, 886
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
PsiI	TTATAA	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	2 cut(s)	464, 565
PsuI	RGATCY	1 cut(s)	643
SacII	CCGCGG	1 cut(s)	888
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	51, 885
Sau3AI	GATC	5 cut(s)	169, 343, 370, 643, 904
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	794
SfcI	CTRYAG	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	888
SgrBI	CCGCGG	1 cut(s)	888
SmlI	CTYRAG	2 cut(s)	118, 854
SmoI	CTYRAG	2 cut(s)	118, 854
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	7 cut(s)	95, 330, 421, 683, 692, 849, 1011
SsiI	CCGC	2 cut(s)	885, 887
SspMI	CTAG	3 cut(s)	182, 299, 1029
StyI	CCWWGG	2 cut(s)	154, 254
TaaI	ACNGT	3 cut(s)	19, 814, 1038
TaiI	ACGT	2 cut(s)	534, 724
TaqI	TCGA	1 cut(s)	718
TasI	AATT	7 cut(s)	95, 330, 421, 683, 692, 849, 1011
TauI	GCSGC	1 cut(s)	887
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	2 cut(s)	768, 824
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	204, 605, 829, 881
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	2 cut(s)	768, 824
Van91I	CCANNNNNTGG	1 cut(s)	255
XbaI	TCTAGA	1 cut(s)	1028
XceI	RCATGY	1 cut(s)	165
XspI	CTAG	3 cut(s)	182, 299, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.