MD08G1009100.v1.1

UPF0496 protein At1g20180-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
674835 .. 676199
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1009100.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGATCATGTCTAAGATGAGGAAAACCCTACGAACCAAGTTGAGATCTGCGTTCTCCAAGCCAAGGAGCAAAAAGGACAATGTCGGTGGGAATAGCTTCTCCAGCAAGTTAAACGTGAAAGAAGAATACTTGGAAGTTTTCAGAACAAAATCGTACGTAGAAATGTGGGATAGGGTTCACGGACAGCTCCCGAGCGCTAGGCTTTCTTCGTCTAGCTCATCGCTTCCGCCTAATTTGTTTTCGGACCGCTCCGAATATTTGCTAGAACCGCGGCAAGAAACCCTTAAAAACATCGTCGACAAGGAGGGCATAAATCTCCACCACCTTCTCACCGACTACTTCGAAGCCAGCTTAGATGCCTGCCACATTTGTGACGTGCTCCTCCGTAGCATGCACCAAACCCGGGCAGAAAATCGACACACGAAGAAGCTCTTACTAAAACTCAGCCGAAGGGTACGCATACTTAATAATGATAATATCGACATTACTGATGACAAACAATGCCTGGCAATTTTCGGGGAGCTTGGCACATTTGCCAGAGCCAAAAATCCGTTGTCGATAGTCAGCCCTGGGCAGTTCCGTGACATTCACGACAGCTACGCGGCGCTGTTCAATAGGCTAACTTTAAAGCACAAAAAGGTGCGCAGGGCCGCAAAGCGTAACAGAATATGCAAAAAGGTTGGAGAGGTGGGTCTGGTGTTGTCACACACCGCGCTTTTGATCGCGTGGCTTGTGTTTGCAATCCACAGCATGATTGGAATCGTGGTGGCGCCGGCGCTCATGGCCTGCTCATTGGGTTTGTGCGTGAGAAAAATGGACTCTGCGGCGGAGTGGTTGAATGCTAGGTTTCCCGAGAGCCACGGGAAGCAACTTGACGTCGCGGCGCAAGGGGTTTATATTTTGATCAACGACTTCGATACAATGAGTCGGATGGTGAGACGTTTGCACAATGAAGTGGAGCACCGGAAAGTGGTGGCCGGAATATGTGTTAGAAGTGTGAGGAGTATTATTACTACGAGTAATGGTGGATCAGCCTCAAACTTTGACATATTTAAGAAGGTGGTGAGGGAATTTCATGCGAGTGAGGCTAGCTTTTTGGAGCAGCTAGAGGAGCTTGAAGAACATATTTACTTGTGCTTGCTCACCATAAACAGGTCGAGAAGGCTTGTGATACAAGAAATATTGGCAAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

399

Amino Acids

45.27

Weight (kDa)

9.69

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 73 - 394 8e-09 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011075)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 879
Acc16I TGCGCA 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 769
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 297
AccII CGCG 5 cut(s) 271, 602, 713, 725, 881
AclWI GGATC 1 cut(s) 1036
AcoI YGGCCR 1 cut(s) 975
AcsI RAATTY 1 cut(s) 1070
AcyI GRCGYC 2 cut(s) 770, 876
AfaI GTAC 3 cut(s) 155, 456, 1192
AfeI AGCGCT 1 cut(s) 196
AfiI CCNNNNNNNGG 4 cut(s) 63, 403, 970, 1152
AgsI TTSAA 3 cut(s) 613, 838, 1118
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 2 cut(s) 504, 568
AleI CACNNNNGTG 1 cut(s) 369
Alw21I GWGCWC 2 cut(s) 381, 963
Alw26I GTCTC 1 cut(s) 931
AlwI GGATC 1 cut(s) 1036
Ama87I CYCGRG 3 cut(s) 190, 402, 851
Aor51HI AGCGCT 1 cut(s) 196
AoxI GGCC 3 cut(s) 648, 783, 975
ApeKI GCWGC 1 cut(s) 1102
ApoI RAATTY 1 cut(s) 1070
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 7 cut(s) 197, 607, 645, 715, 772, 778, 886
AspS9I GGNCC 2 cut(s) 244, 648
AsuC2I CCSGG 2 cut(s) 403, 404
AsuHPI GGTGA 4 cut(s) 322, 946, 1075, 1135
AsuII TTCGAA 1 cut(s) 342
AsuNHI GCTAGC 1 cut(s) 1088
AvaI CYCGRG 3 cut(s) 190, 402, 851
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 769
Bbv12I GWGCWC 2 cut(s) 381, 963
BbvI GCAGC 1 cut(s) 1114
BccI CCATC 1 cut(s) 925
BciT130I CCWGG 2 cut(s) 506, 570
BclI TGATCA 2 cut(s) 3, 903
BcnI CCSGG 2 cut(s) 403, 404
BcoDI GTCTC 1 cut(s) 931
BfaI CTAG 6 cut(s) 198, 213, 263, 843, 1089, 1106
BfoI RGCGCY 4 cut(s) 198, 608, 773, 779
BglII AGATCT 1 cut(s) 44
BisI GCNGC 6 cut(s) 272, 603, 651, 825, 882, 1103
BlsI GCNGC 6 cut(s) 273, 604, 652, 826, 883, 1104
Bme1390I CCNGG 4 cut(s) 403, 404, 506, 570
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 3 cut(s) 190, 402, 851
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 244, 648
BmiI GGNNCC 1 cut(s) 771
BmrFI CCNGG 4 cut(s) 403, 404, 506, 570
BmsI GCATC 1 cut(s) 346
BmtI GCTAGC 1 cut(s) 1092
BpmI CTGGAG 1 cut(s) 85
Bpu14I TTCGAA 1 cut(s) 342
BpuMI CCSGG 2 cut(s) 403, 404
BsaAI YACGTR 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 758
BsaHI GRCGYC 2 cut(s) 770, 876
BsaJI CCNNGG 6 cut(s) 62, 269, 402, 568, 569, 859
BsaWI WCCGGW 1 cut(s) 963
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 403, 970, 1152
Bse118I RCCGGY 1 cut(s) 772
Bse8I GATNNNNATC 1 cut(s) 758
BseBI CCWGG 2 cut(s) 506, 570
BseDI CCNNGG 6 cut(s) 62, 269, 402, 568, 569, 859
BseGI GGATG 1 cut(s) 936
BseJI GATNNNNATC 1 cut(s) 758
BseLI CCNNNNNNNGG 4 cut(s) 63, 403, 970, 1152
BseMII CTCAG 1 cut(s) 457
BseRI GAGGAG 3 cut(s) 371, 1015, 1124
BseXI GCAGC 1 cut(s) 1114
Bsh1236I CGCG 5 cut(s) 271, 602, 713, 725, 881
BshFI GGCC 3 cut(s) 650, 785, 977
BshNI GGYRCC 1 cut(s) 769
BsiHKAI GWGCWC 2 cut(s) 381, 963
BsiHKCI CYCGRG 3 cut(s) 190, 402, 851
BsiSI CCGG 4 cut(s) 403, 773, 964, 978
BsiWI CGTACG 1 cut(s) 153
BslI CCNNNNNNNGG 4 cut(s) 63, 403, 970, 1152
BsmAI GTCTC 1 cut(s) 931
BsmBI CGTCTC 1 cut(s) 931
BsmI GAATGC 1 cut(s) 844
BsnI GGCC 3 cut(s) 650, 785, 977
BsoBI CYCGRG 3 cut(s) 190, 402, 851
Bsp119I TTCGAA 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 381, 963
Bsp143I GATC 5 cut(s) 3, 44, 720, 903, 1028
BspANI GGCC 3 cut(s) 650, 785, 977
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 5 cut(s) 271, 602, 713, 725, 881
BspLI GGNNCC 1 cut(s) 771
BspOI GCTAGC 1 cut(s) 1092
BspPI GGATC 1 cut(s) 1036
BspT104I TTCGAA 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 769
BsrBI CCGCTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 772
BssAI RCCGGY 1 cut(s) 772
BssECI CCNNGG 6 cut(s) 62, 269, 402, 568, 569, 859
BssMI GATC 5 cut(s) 3, 44, 720, 903, 1028
BssNI GRCGYC 2 cut(s) 770, 876
BssT1I CCWWGG 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 506, 570
BstACI GRCGYC 2 cut(s) 770, 876
BstBAI YACGTR 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 7 cut(s) 349, 361, 392, 774, 787, 1090, 1139
BstDEI CTNAG 3 cut(s) 12, 352, 443
BstDSI CCRYGG 2 cut(s) 269, 859
BstF5I GGATG 1 cut(s) 936
BstFNI CGCG 5 cut(s) 271, 602, 713, 725, 881
BstH2I RGCGCY 4 cut(s) 198, 608, 773, 779
BstHHI GCGC 7 cut(s) 197, 607, 645, 715, 772, 778, 886
BstKTI GATC 5 cut(s) 6, 47, 723, 906, 1031
BstMAI GTCTC 1 cut(s) 931
BstMBI GATC 5 cut(s) 3, 44, 720, 903, 1028
BstMWI GCNNNNNNNGC 5 cut(s) 102, 268, 782, 1085, 1111
BstNI CCWGG 2 cut(s) 506, 570
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 4 cut(s) 401, 402, 504, 568
BstSNI TACGTA 1 cut(s) 157
BstUI CGCG 5 cut(s) 271, 602, 713, 725, 881
BstV1I GCAGC 1 cut(s) 1114
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 3 cut(s) 650, 785, 977
BtgI CCRYGG 2 cut(s) 269, 859
BtgZI GCGATG 1 cut(s) 204
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 936
Cac8I GCNNGC 7 cut(s) 349, 361, 392, 774, 787, 1090, 1139
CfoI GCGC 7 cut(s) 197, 607, 645, 715, 772, 778, 886
Cfr10I RCCGGY 1 cut(s) 772
Cfr13I GGNCC 2 cut(s) 244, 648
Cfr42I CCGCGG 1 cut(s) 272
Cfr9I CCCGGG 1 cut(s) 402
CpoI CGGWCCG 1 cut(s) 244
Csp6I GTAC 3 cut(s) 154, 455, 1191
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CspI CGGWCCG 1 cut(s) 244
CviAII CATG 5 cut(s) 7, 391, 751, 781, 1076
CviQI GTAC 3 cut(s) 154, 455, 1191
DdeI CTNAG 3 cut(s) 12, 352, 443
DinI GGCGCC 1 cut(s) 771
DpnI GATC 5 cut(s) 5, 46, 722, 905, 1030
DpnII GATC 5 cut(s) 3, 44, 720, 903, 1028
DraI TTTAAA 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 975
EciI GGCGGA 2 cut(s) 216, 842
Eco105I TACGTA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 244
Eco47III AGCGCT 1 cut(s) 196
Eco88I CYCGRG 3 cut(s) 190, 402, 851
EcoRII CCWGG 2 cut(s) 504, 568
EcoT14I CCWWGG 1 cut(s) 62
EgeI GGCGCC 1 cut(s) 771
EheI GGCGCC 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 931
FaeI CATG 5 cut(s) 10, 394, 754, 784, 1079
FalI AAGNNNNNCTT 4 cut(s) 267, 299, 416, 448
FatI CATG 5 cut(s) 6, 390, 750, 780, 1075
FbaI TGATCA 2 cut(s) 3, 903
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 6 cut(s) 272, 603, 651, 825, 882, 1103
FokI GGATG 1 cut(s) 943
Fsp4HI GCNGC 6 cut(s) 272, 603, 651, 825, 882, 1103
FspBI CTAG 6 cut(s) 198, 213, 263, 843, 1089, 1106
FspI TGCGCA 1 cut(s) 644
GlaI GCGC 7 cut(s) 196, 606, 644, 714, 771, 777, 885
GluI GCNGC 6 cut(s) 272, 603, 651, 825, 882, 1103
GsuI CTGGAG 1 cut(s) 85
HaeII RGCGCY 4 cut(s) 198, 608, 773, 779
HaeIII GGCC 3 cut(s) 650, 785, 977
HapII CCGG 4 cut(s) 403, 773, 964, 978
HhaI GCGC 7 cut(s) 197, 607, 645, 715, 772, 778, 886
Hin1I GRCGYC 2 cut(s) 770, 876
Hin1II CATG 5 cut(s) 10, 394, 754, 784, 1079
Hin6I GCGC 7 cut(s) 195, 605, 643, 713, 770, 776, 884
HinP1I GCGC 7 cut(s) 195, 605, 643, 713, 770, 776, 884
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 3 cut(s) 759, 818, 925
HpaII CCGG 4 cut(s) 403, 773, 964, 978
HphI GGTGA 4 cut(s) 322, 946, 1075, 1135
Hpy166II GTNNAC 2 cut(s) 178, 298
Hpy188I TCNGA 4 cut(s) 143, 244, 253, 930
Hpy188III TCNNGA 4 cut(s) 190, 590, 851, 1158
Hpy8I GTNNAC 2 cut(s) 178, 298
Hpy99I CGWCG 2 cut(s) 299, 881
HpyAV CCTTC 4 cut(s) 335, 444, 1051, 1155
HpyCH4IV ACGT 5 cut(s) 114, 156, 375, 876, 940
HpyCH4V TGCA 4 cut(s) 394, 672, 740, 946
HpyF10VI GCNNNNNNNGC 5 cut(s) 102, 268, 782, 1085, 1111
HpyF3I CTNAG 3 cut(s) 12, 352, 443
HpySE526I ACGT 5 cut(s) 114, 156, 375, 876, 940
Hsp92I GRCGYC 2 cut(s) 770, 876
Hsp92II CATG 5 cut(s) 10, 394, 754, 784, 1079
HspAI GCGC 7 cut(s) 195, 605, 643, 713, 770, 776, 884
KasI GGCGCC 1 cut(s) 769
KroI GCCGGC 1 cut(s) 772
KroNI GCCGGC 1 cut(s) 774
Ksp22I TGATCA 2 cut(s) 3, 903
KspI CCGCGG 1 cut(s) 272
Kzo9I GATC 5 cut(s) 3, 44, 720, 903, 1028
LmnI GCTCC 8 cut(s) 66, 192, 254, 384, 520, 958, 1099, 1111
Lsp1109I GCAGC 1 cut(s) 1114
LweI GCATC 1 cut(s) 346
MaeI CTAG 6 cut(s) 198, 213, 263, 843, 1089, 1106
MaeII ACGT 5 cut(s) 114, 156, 375, 876, 940
MaeIII GTNAC 4 cut(s) 371, 581, 659, 702
MalI GATC 5 cut(s) 5, 46, 722, 905, 1030
MbiI CCGCTC 1 cut(s) 249
MboI GATC 5 cut(s) 3, 44, 720, 903, 1028
MboII GAAGA 4 cut(s) 134, 198, 436, 1130
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 381, 963
MluCI AATT 3 cut(s) 232, 510, 1070
Mly113I GGCGCC 1 cut(s) 770
MlyI GAGTC 2 cut(s) 812, 934
MmeI TCCRAC 2 cut(s) 661, 908
MnlI CCTC 9 cut(s) 12, 298, 392, 679, 993, 1045, 1059, 1078, 1102
MreI CGCCGGCG 1 cut(s) 772
MroNI GCCGGC 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 5 cut(s) 110, 285, 465, 626, 1053
MslI CAYNNNNRTG 2 cut(s) 369, 1080
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 4 cut(s) 403, 773, 964, 978
MspR9I CCNGG 4 cut(s) 403, 404, 506, 570
Mva1269I GAATGC 1 cut(s) 844
MvaI CCWGG 2 cut(s) 506, 570
MvnI CGCG 5 cut(s) 271, 602, 713, 725, 881
MwoI GCNNNNNNNGC 5 cut(s) 102, 268, 782, 1085, 1111
NaeI GCCGGC 1 cut(s) 774
NarI GGCGCC 1 cut(s) 770
NciI CCSGG 2 cut(s) 403, 404
NdeII GATC 5 cut(s) 3, 44, 720, 903, 1028
NgoMIV GCCGGC 1 cut(s) 772
NheI GCTAGC 1 cut(s) 1088
NlaIII CATG 5 cut(s) 10, 394, 754, 784, 1079
NlaIV GGNNCC 1 cut(s) 771
NmuCI GTSAC 3 cut(s) 371, 581, 702
NsbI TGCGCA 1 cut(s) 644
NspI RCATGY 1 cut(s) 394
NspV TTCGAA 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 369
PaeI GCATGC 1 cut(s) 394
PasI CCCWGGG 1 cut(s) 569
PctI GAATGC 1 cut(s) 844
PdiI GCCGGC 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 759
Pfl23II CGTACG 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 6 cut(s) 273, 604, 652, 826, 883, 1104
PleI GAGTC 2 cut(s) 812, 933
PluTI GGCGCC 1 cut(s) 773
PpsI GAGTC 2 cut(s) 812, 933
Ppu21I YACGTR 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 504, 568
PspGI CCWGG 2 cut(s) 504, 568
PspLI CGTACG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 771
PspPI GGNCC 2 cut(s) 244, 648
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 3 cut(s) 155, 456, 1192
RsaNI GTAC 3 cut(s) 154, 455, 1191
RseI CAYNNNNRTG 2 cut(s) 369, 1080
Rsr2I CGGWCCG 1 cut(s) 244
RsrII CGGWCCG 1 cut(s) 244
SacII CCGCGG 1 cut(s) 272
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 5 cut(s) 110, 285, 465, 626, 1053
SatI GCNGC 6 cut(s) 272, 603, 651, 825, 882, 1103
Sau3AI GATC 5 cut(s) 3, 44, 720, 903, 1028
Sau96I GGNCC 2 cut(s) 244, 648
SchI GAGTC 2 cut(s) 812, 934
ScrFI CCNGG 4 cut(s) 403, 404, 506, 570
SduI GDGCHC 2 cut(s) 381, 963
SfaNI GCATC 1 cut(s) 346
SfoI GGCGCC 1 cut(s) 771
Sfr303I CCGCGG 1 cut(s) 272
SfuI TTCGAA 1 cut(s) 342
SgrAI CRCCGGYG 1 cut(s) 772
SgrBI CCGCGG 1 cut(s) 272
SinI GGWCC 1 cut(s) 244
SmaI CCCGGG 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 369, 1080
SnaBI TACGTA 1 cut(s) 157
SphI GCATGC 1 cut(s) 394
Sse9I AATT 3 cut(s) 232, 510, 1070
SspDI GGCGCC 1 cut(s) 769
SspI AATATT 2 cut(s) 257, 1182
SspMI CTAG 6 cut(s) 198, 213, 263, 843, 1089, 1106
StyD4I CCNGG 4 cut(s) 401, 402, 504, 568
StyI CCWWGG 1 cut(s) 62
TaiI ACGT 5 cut(s) 117, 159, 378, 879, 943
TaqI TCGA 7 cut(s) 297, 342, 415, 480, 557, 915, 1157
TasI AATT 3 cut(s) 232, 510, 1070
TauI GCSGC 5 cut(s) 274, 605, 653, 827, 884
TfiI GAWTC 1 cut(s) 759
Tru1I TTAA 5 cut(s) 110, 285, 465, 626, 1053
Tru9I TTAA 5 cut(s) 110, 285, 465, 626, 1053
TseFI GTSAC 3 cut(s) 371, 581, 702
TseI GCWGC 1 cut(s) 1102
Tsp45I GTSAC 3 cut(s) 371, 581, 702
TspDTI ATGAA 2 cut(s) 966, 1064
TspGWI ACGGA 4 cut(s) 195, 374, 540, 569
TspMI CCCGGG 1 cut(s) 402
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 1070
XceI RCATGY 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 752
XmaI CCCGGG 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 6 cut(s) 198, 213, 263, 843, 1089, 1106
ZraI GACGTC 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.