Prupe.1G360800_v2.0.a1

UPF0496 protein At1g20180-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011075
Physical Location & Seq
Reverse (-)
33254199 .. 33256089
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G360800.2

Sequence Viewer

Length: 1230 bp
ATGTCTAAGATGAAGAAAATTTTGCGCACCAAGTTGAGATCTGCGTTTTCCAAGGCAGGGTGCAGATCATCCGGAGGGAAAGGAGACCGTGTCGGAGGCAATAGCTTCTCTAACAAGCTAAGCGTGAACGAAGAATACTTGCAAGCTTTCAGAACAAAGTCGTACGTAGAAATGTGGGATAGAGTTCATGGACAGCTTCCAAGCACTGCTACTTCTTCTTCCTCGTCTCTTCCTCCTAATTCGTACATGGATCGCTCAGAATATTTGCTTGAACCGCGGCAGGATATTTTAAAGGACATAATTAGTGAGGAGGGCTTAAATCTCCATCATTTTCTCGCTGACTACTTTGAAGCGAGCTTAGACGCCTGCCATATCTGCGACTTGCTCCTCCGCTCCCTCCATCAAACACGTTCCGAGTACAGAAAAATCAAGAAGCTCATCCTAAAACTAAGCCAAAGGGGACTTCTACTTGAACAAGCACAAACACATAATCATGCTAACGATACTAATAATAACAACGAAGATGATGATGAACAACGGGAAGCTATTTTTGGAGATCTTACCACATTTGCCGTTGTCAAGAAGAATCCCTTGTCAATTATCAGCCCCGTGCAGTTCCGTGATATTCATGATAGCCACTTGGCGTTGTTCAATAGGTTAACTTTAAAACACAAAAAGGTTCAACGGACCGCAAAGCGTAACAGAATTTGCAAGAAAGTTGGAGGGGTTGGTCTGGTGGTGTCACACAGTGCACTTTTGATTGCCTTGCTTGTGCTTGCAATCCACAGCATGATTGGGATTGTGGTGGCGCCAGCACTGATGGCTTGCTCGTTGGGTATGTGCGCCAAGAAAATGGAGTCGGCGCAGGATTGGTTGGAAGCAAGATTTCCAGATAGCCATTCAGAGCAACTCGATGTGGCGGCAAAAGGGATTTATATTTTGATCAACGATTTTGACACCATGAGTCGGATGGTGAGGAGGTTACATGACGAGGTGGAGCACCGCAAAGCTATTGCGGTTATGTGTGTCACTGCTGCCAGGAATGTGAAAAATGTCAACGGGTCTTCGGGGAACTGTGAAATATTCAAGGAGGTTGTGAGGGAATTTCATGCCACTGAGTCTGGGTTTGTGGACCAATTAGAGGAGCTTGAAGAACACATCTACTTGTGCTTGCTCACCATTAACAGATCCAGAAGGCTTGTCCTTGAAGAAATAGTGGCCACTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

410

Amino Acids

46.15

Weight (kDa)

8.62

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20180 AT1G20180
fragaria_vesca FvH4_2g38050
malus_domestica MD03G1275300.v1.1 MD08G1009100.v1.1 MD15G1007800.v1.1 MD15G1007900.v1.1
prunus_persica Prupe.1G360800_v2.0.a1 Prupe.1G360800_v2.0.a1
pyrus_communis pycom15g00630
rosa_chinensis RchiOBHm_Chr6g0303541
rosa_laevigata RLG00000011075
rosa_multiflora Rmu_ssc0000114.1_g000034
rosa_roxburghii Rroxscaffold_7G00164660
rosa_rugosa Rorug06G0322100
rosa_samantha Rh6AG436500 Rh6BG466900 Rh6CG448500 Rh6DG435300
rosa_wichuraiana Rw6G037780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 808
AccBSI CCGCTC 1 cut(s) 393
AccII CGCG 1 cut(s) 277
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 7 cut(s) 275, 277, 391, 690, 920, 1003, 1016
AclWI GGATC 2 cut(s) 258, 1182
AcoI YGGCCR 1 cut(s) 1218
AcsI RAATTY 3 cut(s) 18, 705, 1103
AcyI GRCGYC 2 cut(s) 363, 809
AdeI CACNNNGTG 1 cut(s) 749
AfaI GTAC 3 cut(s) 164, 245, 419
AfiI CCNNNNNNNGG 3 cut(s) 57, 966, 1141
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 8 cut(s) 272, 350, 473, 652, 683, 1087, 1151, 1208
AjnI CCWGG 1 cut(s) 1037
AjuI GAANNNNNNNTTGG 4 cut(s) 447, 479, 534, 566
AluBI AGCT 9 cut(s) 105, 118, 146, 196, 357, 436, 545, 1010, 1147
AluI AGCT 9 cut(s) 105, 118, 146, 196, 357, 436, 545, 1010, 1147
Alw21I GWGCWC 2 cut(s) 754, 1002
Alw26I GTCTC 2 cut(s) 78, 231
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 2 cut(s) 258, 1182
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 1 cut(s) 1218
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 1034
ApoI RAATTY 3 cut(s) 18, 705, 1103
AspLEI GCGC 4 cut(s) 27, 811, 845, 865
AspS9I GGNCC 2 cut(s) 687, 1132
AsuHPI GGTGA 2 cut(s) 985, 1168
AvaII GGWCC 2 cut(s) 687, 1132
BaeGI GKGCMC 1 cut(s) 754
BalI TGGCCA 1 cut(s) 1220
BanI GGYRCC 1 cut(s) 808
BbsI GAAGAC 1 cut(s) 1056
Bbv12I GWGCWC 2 cut(s) 754, 1002
BbvI GCAGC 1 cut(s) 1021
BccI CCATC 4 cut(s) 333, 408, 814, 964
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 1 cut(s) 1039
BclI TGATCA 1 cut(s) 942
BcoDI GTCTC 2 cut(s) 78, 231
BfoI RGCGCY 1 cut(s) 812
BglII AGATCT 2 cut(s) 38, 556
BisI GCNGC 3 cut(s) 278, 921, 1035
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 3 cut(s) 279, 922, 1036
Bme1390I CCNGG 1 cut(s) 1039
Bme18I GGWCC 2 cut(s) 687, 1132
BmgT120I GGNCC 2 cut(s) 687, 1132
BmiI GGNNCC 1 cut(s) 810
BmrFI CCNGG 1 cut(s) 1039
BpiI GAAGAC 1 cut(s) 1056
Bpu1102I GCTNAGC 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 363, 809
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 51, 275
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 966, 1141
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 1 cut(s) 1039
BseDI CCNNGG 2 cut(s) 51, 275
BseGI GGATG 3 cut(s) 68, 438, 975
BseLI CCNNNNNNNGG 3 cut(s) 57, 966, 1141
BseMII CTCAG 2 cut(s) 270, 1107
BseRI GAGGAG 4 cut(s) 323, 377, 991, 1157
BseSI GKGCMC 1 cut(s) 754
BseXI GCAGC 1 cut(s) 1021
BsgI GTGCAG 2 cut(s) 82, 632
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 1220
BshNI GGYRCC 1 cut(s) 808
BsiHKAI GWGCWC 2 cut(s) 754, 1002
BsiSI CCGG 1 cut(s) 72
BsiWI CGTACG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 474
BslI CCNNNNNNNGG 3 cut(s) 57, 966, 1141
BsmAI GTCTC 2 cut(s) 78, 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 474
BsnI GGCC 1 cut(s) 1220
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 754, 1002
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 6 cut(s) 38, 65, 250, 556, 942, 1187
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 7 cut(s) 275, 277, 391, 690, 920, 1003, 1016
BspANI GGCC 1 cut(s) 1220
BspCNI CTCAG 2 cut(s) 269, 1108
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 810
BspPI GGATC 2 cut(s) 258, 1182
BspT107I GGYRCC 1 cut(s) 808
BspTNI GGTCTC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 51, 275
BssMI GATC 6 cut(s) 38, 65, 250, 556, 942, 1187
BssNI GRCGYC 2 cut(s) 363, 809
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 1039
Bst4CI ACNGT 3 cut(s) 89, 749, 1076
Bst6I CTCTTC 1 cut(s) 234
BstACI GRCGYC 2 cut(s) 363, 809
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 7 cut(s) 144, 355, 367, 777, 813, 826, 1172
BstDEI CTNAG 6 cut(s) 6, 119, 256, 358, 449, 1116
BstDSI CCRYGG 1 cut(s) 275
BstF5I GGATG 3 cut(s) 68, 438, 975
BstFNI CGCG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 812
BstHHI GCGC 4 cut(s) 27, 811, 845, 865
BstKTI GATC 6 cut(s) 41, 68, 253, 559, 945, 1190
BstMAI GTCTC 2 cut(s) 78, 231
BstMBI GATC 6 cut(s) 38, 65, 250, 556, 942, 1187
BstMWI GCNNNNNNNGC 3 cut(s) 274, 375, 821
BstNI CCWGG 1 cut(s) 1039
BstSCI CCNGG 1 cut(s) 1037
BstSLI GKGCMC 1 cut(s) 754
BstSNI TACGTA 1 cut(s) 166
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 1021
BstV2I GAAGAC 1 cut(s) 1056
BstX2I RGATCY 3 cut(s) 38, 556, 1187
BstXI CCANNNNNNTGG 1 cut(s) 853
BstYI RGATCY 3 cut(s) 38, 556, 1187
BsuRI GGCC 1 cut(s) 1220
BtgI CCRYGG 1 cut(s) 275
BtsCI GGATG 3 cut(s) 68, 438, 975
BtsI GCAGTG 2 cut(s) 204, 1029
BtsIMutI CAGTG 5 cut(s) 204, 754, 815, 1029, 1113
Cac8I GCNNGC 7 cut(s) 144, 355, 367, 777, 813, 826, 1172
CciI TCATGA 1 cut(s) 628
CfoI GCGC 4 cut(s) 27, 811, 845, 865
Cfr13I GGNCC 2 cut(s) 687, 1132
Cfr42I CCGCGG 1 cut(s) 278
CpoI CGGWCCG 1 cut(s) 687
CseI GACGC 1 cut(s) 371
Csp6I GTAC 3 cut(s) 163, 244, 418
CspI CGGWCCG 1 cut(s) 687
CviAII CATG 8 cut(s) 188, 247, 494, 629, 790, 961, 986, 1109
CviQI GTAC 3 cut(s) 163, 244, 418
DdeI CTNAG 6 cut(s) 6, 119, 256, 358, 449, 1116
DinI GGCGCC 1 cut(s) 810
DpnI GATC 6 cut(s) 40, 67, 252, 558, 944, 1189
DpnII GATC 6 cut(s) 38, 65, 250, 556, 942, 1187
DraI TTTAAA 2 cut(s) 291, 666
DraIII CACNNNGTG 1 cut(s) 749
EaeI YGGCCR 1 cut(s) 1218
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco105I TACGTA 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 687, 1132
EcoRII CCWGG 1 cut(s) 1037
EcoT14I CCWWGG 1 cut(s) 51
EgeI GGCGCC 1 cut(s) 810
EheI GGCGCC 1 cut(s) 810
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 8 cut(s) 191, 250, 497, 632, 793, 964, 989, 1112
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 1 cut(s) 474
FatI CATG 8 cut(s) 187, 246, 493, 628, 789, 960, 985, 1108
FbaI TGATCA 1 cut(s) 942
Fnu4HI GCNGC 3 cut(s) 278, 921, 1035
FokI GGATG 3 cut(s) 55, 425, 982
Fsp4HI GCNGC 3 cut(s) 278, 921, 1035
FspI TGCGCA 1 cut(s) 26
GlaI GCGC 4 cut(s) 26, 810, 844, 864
GluI GCNGC 3 cut(s) 278, 921, 1035
HaeII RGCGCY 1 cut(s) 812
HaeIII GGCC 1 cut(s) 1220
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 371
HhaI GCGC 4 cut(s) 27, 811, 845, 865
Hin1I GRCGYC 2 cut(s) 363, 809
Hin1II CATG 8 cut(s) 191, 250, 497, 632, 793, 964, 989, 1112
Hin6I GCGC 4 cut(s) 25, 809, 843, 863
HinP1I GCGC 4 cut(s) 25, 809, 843, 863
HincII GTYRAC 2 cut(s) 660, 1057
HindII GTYRAC 2 cut(s) 660, 1057
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 4 cut(s) 586, 857, 964, 1118
HpaI GTTAAC 1 cut(s) 660
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 985, 1168
Hpy166II GTNNAC 5 cut(s) 127, 660, 752, 1057, 1132
Hpy188I TCNGA 6 cut(s) 95, 152, 259, 415, 904, 969
Hpy188III TCNNGA 6 cut(s) 72, 430, 580, 629, 890, 1191
Hpy8I GTNNAC 5 cut(s) 127, 660, 752, 1057, 1132
HpyAV CCTTC 1 cut(s) 1188
HpyCH4III ACNGT 3 cut(s) 89, 749, 1076
HpyCH4IV ACGT 2 cut(s) 165, 409
HpyCH4V TGCA 6 cut(s) 63, 142, 613, 711, 752, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 274, 375, 821
HpyF3I CTNAG 6 cut(s) 6, 119, 256, 358, 449, 1116
HpySE526I ACGT 2 cut(s) 165, 409
Hsp92I GRCGYC 2 cut(s) 363, 809
Hsp92II CATG 8 cut(s) 191, 250, 497, 632, 793, 964, 989, 1112
HspAI GCGC 4 cut(s) 25, 809, 843, 863
KasI GGCGCC 1 cut(s) 808
Kpn2I TCCGGA 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 942
KspAI GTTAAC 1 cut(s) 660
KspI CCGCGG 1 cut(s) 278
Kzo9I GATC 6 cut(s) 38, 65, 250, 556, 942, 1187
LmnI GCTCC 4 cut(s) 390, 398, 997, 1144
Lsp1109I GCAGC 1 cut(s) 1021
MaeII ACGT 2 cut(s) 165, 409
MaeIII GTNAC 4 cut(s) 698, 741, 981, 1027
MalI GATC 6 cut(s) 40, 67, 252, 558, 944, 1189
MbiI CCGCTC 1 cut(s) 393
MboI GATC 6 cut(s) 38, 65, 250, 556, 942, 1187
MflI RGATCY 3 cut(s) 38, 556, 1187
MhlI GDGCHC 2 cut(s) 754, 1002
MlsI TGGCCA 1 cut(s) 1220
MluCI AATT 7 cut(s) 18, 238, 300, 597, 705, 1103, 1136
MluNI TGGCCA 1 cut(s) 1220
Mly113I GGCGCC 1 cut(s) 809
MlyI GAGTC 3 cut(s) 866, 973, 1127
MmeI TCCRAC 4 cut(s) 73, 700, 855, 947
Mox20I TGGCCA 1 cut(s) 1220
MroI TCCGGA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 1220
MseI TTAA 5 cut(s) 290, 317, 659, 665, 1182
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 1220
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 1039
MvaI CCWGG 1 cut(s) 1039
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 274, 375, 821
NarI GGCGCC 1 cut(s) 809
NdeII GATC 6 cut(s) 38, 65, 250, 556, 942, 1187
NlaIII CATG 8 cut(s) 191, 250, 497, 632, 793, 964, 989, 1112
NlaIV GGNNCC 1 cut(s) 810
NmuCI GTSAC 2 cut(s) 741, 1027
NsbI TGCGCA 1 cut(s) 26
PagI TCATGA 1 cut(s) 628
PfeI GAWTC 1 cut(s) 586
Pfl23II CGTACG 1 cut(s) 162
PflFI GACNNNGTC 1 cut(s) 89
PkrI GCNGC 3 cut(s) 279, 922, 1036
PleI GAGTC 3 cut(s) 865, 972, 1126
PluTI GGCGCC 1 cut(s) 812
PpsI GAGTC 3 cut(s) 865, 972, 1126
Ppu21I YACGTR 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 1037
PspGI CCWGG 1 cut(s) 1037
PspLI CGTACG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 810
PspPI GGNCC 2 cut(s) 687, 1132
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
PsuI RGATCY 3 cut(s) 38, 556, 1187
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 3 cut(s) 164, 245, 419
RsaNI GTAC 3 cut(s) 163, 244, 418
RseI CAYNNNNRTG 1 cut(s) 492
Rsr2I CGGWCCG 1 cut(s) 687
RsrII CGGWCCG 1 cut(s) 687
SacII CCGCGG 1 cut(s) 278
SaqAI TTAA 5 cut(s) 290, 317, 659, 665, 1182
SatI GCNGC 3 cut(s) 278, 921, 1035
Sau3AI GATC 6 cut(s) 38, 65, 250, 556, 942, 1187
Sau96I GGNCC 2 cut(s) 687, 1132
SchI GAGTC 3 cut(s) 866, 973, 1127
ScrFI CCNGG 1 cut(s) 1039
SduI GDGCHC 2 cut(s) 754, 1002
SfoI GGCGCC 1 cut(s) 810
Sfr303I CCGCGG 1 cut(s) 278
SgrBI CCGCGG 1 cut(s) 278
SinI GGWCC 2 cut(s) 687, 1132
SmiMI CAYNNNNRTG 1 cut(s) 492
SnaBI TACGTA 1 cut(s) 166
Sse9I AATT 7 cut(s) 18, 238, 300, 597, 705, 1103, 1136
SsiI CCGC 7 cut(s) 275, 277, 391, 690, 920, 1003, 1016
SspDI GGCGCC 1 cut(s) 808
SspI AATATT 2 cut(s) 263, 1083
StyD4I CCNGG 1 cut(s) 1037
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 3 cut(s) 89, 749, 1076
TaiI ACGT 2 cut(s) 168, 412
TaqI TCGA 1 cut(s) 912
TasI AATT 7 cut(s) 18, 238, 300, 597, 705, 1103, 1136
TatI WGTACW 1 cut(s) 417
TauI GCSGC 2 cut(s) 280, 923
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 5 cut(s) 290, 317, 659, 665, 1182
Tru9I TTAA 5 cut(s) 290, 317, 659, 665, 1182
TscAI CASTG 5 cut(s) 211, 754, 822, 1036, 1120
TseFI GTSAC 2 cut(s) 741, 1027
TseI GCWGC 1 cut(s) 1034
Tsp45I GTSAC 2 cut(s) 741, 1027
TspDTI ATGAA 5 cut(s) 26, 176, 546, 617, 1097
TspGWI ACGGA 2 cut(s) 608, 700
TspRI CASTG 5 cut(s) 211, 754, 822, 1036, 1120
Tth111I GACNNNGTC 1 cut(s) 89
VneI GTGCAC 1 cut(s) 750
VpaK11BI GGWCC 2 cut(s) 687, 1132
XapI RAATTY 3 cut(s) 18, 705, 1103
XcmI CCANNNNNNNNNTGG 2 cut(s) 791, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.