MD15G1007900.v1.1

UPF0496 protein At1g20180-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011075
Physical Location & Seq
Reverse (-)
419222 .. 420094
873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1007900.v1.1.491

Sequence Viewer

Length: 678 bp
ATGATCATGTCTAAGATGAGGAAAACCCTACGAACCAAGTTGAGATCTGCGTTCTCCAAGCCAAGAAGAGAAAAAGACAATGTCGGCGGCAATGGCTTCTCCAGCAAGTCAAGCGTGAACGAAGAATACATGGAAGTTTTCAGAACAAAGTCGTACGTAGAAATGTGGGATAGGGTTCACGAACAGCTGCCAAGCACTAGCACTAGCACTAGCCGGCTTCCTTCGTCTAGGTCGTCTCTTCTGTCTAATATGGTGTTGGACCGCTCCGAATATTTACTCGAACCACGGCAAGAAACCCTTAAAAACATCATCGATGAGGAGGGCTTAAATCTCCACCACCTTCTCACCGACTACTTCGAAGCCAGCTTAGACGCCTGCCACATATGTGACGTGCTCCTGCATAGCATCCACCAAACCCGTGCCGAAAACCGACACACGAAGAAGCTCGTATTAAAACTCAGCCAAAGAGTACACCTACTTTATAATGATAATATCGACATTACTGATGATGAACAATGCCTGGAAATTTTCGGGGAGCTTGGCACATTTGCCCGAGCTAAAAATCCGTTGTCGATAATCAGCCCTGGGCCGTTCCGTCACATTCATGATAGCTACGTGGCGTTATTCGATAGGCTGATTTTAAAGCACAAAAAGGTGCGAAGGGCCTCAAAAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

226

Amino Acids

26.05

Weight (kDa)

9.22

Isoelectric Point (pI)

61.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20180 AT1G20180
fragaria_vesca FvH4_2g38050
malus_domestica MD03G1275300.v1.1 MD08G1009100.v1.1 MD15G1007800.v1.1 MD15G1007900.v1.1
prunus_persica Prupe.1G360800_v2.0.a1 Prupe.1G360800_v2.0.a1
pyrus_communis pycom15g00630
rosa_chinensis RchiOBHm_Chr6g0303541
rosa_laevigata RLG00000011075
rosa_multiflora Rmu_ssc0000114.1_g000034
rosa_roxburghii Rroxscaffold_7G00164660
rosa_rugosa Rorug06G0322100
rosa_samantha Rh6AG436500 Rh6BG466900 Rh6CG448500 Rh6DG435300
rosa_wichuraiana Rw6G037780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AccBSI CCGCTC 1 cut(s) 264
AciI CCGC 2 cut(s) 87, 262
AcsI RAATTY 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 155, 471
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 2 cut(s) 519, 583
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 6 cut(s) 187, 366, 445, 538, 557, 612
AluI AGCT 6 cut(s) 187, 366, 445, 538, 557, 612
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 2 cut(s) 587, 663
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 525
AspS9I GGNCC 3 cut(s) 259, 587, 663
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 552
AvaII GGWCC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 174
BceAI ACGGC 2 cut(s) 302, 574
BciT130I CCWGG 2 cut(s) 521, 585
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 4 cut(s) 198, 204, 210, 228
BglII AGATCT 1 cut(s) 44
BisI GCNGC 2 cut(s) 88, 188
BlsI GCNGC 2 cut(s) 89, 189
Bme1390I CCNGG 2 cut(s) 521, 585
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 552
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 3 cut(s) 259, 587, 663
BmrFI CCNGG 2 cut(s) 521, 585
BmsI GCATC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 85
Bpu14I TTCGAA 1 cut(s) 357
Bsa29I ATCGAT 1 cut(s) 312
BsaAI YACGTR 2 cut(s) 157, 616
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 3 cut(s) 284, 583, 584
Bse118I RCCGGY 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 2 cut(s) 521, 585
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 284, 583, 584
BseGI GGATG 1 cut(s) 405
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 174
BshFI GGCC 2 cut(s) 589, 665
BshVI ATCGAT 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 1 cut(s) 214
BsiWI CGTACG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 240
BsmBI CGTCTC 1 cut(s) 240
BsnI GGCC 2 cut(s) 589, 665
BsoBI CYCGRG 1 cut(s) 552
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 2 cut(s) 3, 44
BspACI CCGC 2 cut(s) 87, 262
BspANI GGCC 2 cut(s) 589, 665
BspCNI CTCAG 1 cut(s) 471
BspDI ATCGAT 1 cut(s) 312
BspHI TCATGA 1 cut(s) 604
BspT104I TTCGAA 1 cut(s) 357
BsrBI CCGCTC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 3 cut(s) 284, 583, 584
BssMI GATC 2 cut(s) 3, 44
BssNI GRCGYC 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 521, 585
Bst6I CTCTTC 2 cut(s) 61, 243
BstACI GRCGYC 1 cut(s) 372
BstBAI YACGTR 2 cut(s) 157, 616
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 3 cut(s) 215, 364, 376
BstDEI CTNAG 3 cut(s) 12, 367, 458
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 405
BstKTI GATC 2 cut(s) 6, 47
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 3, 44
BstMWI GCNNNNNNNGC 4 cut(s) 93, 102, 111, 671
BstNI CCWGG 2 cut(s) 521, 585
BstSCI CCNGG 2 cut(s) 519, 583
BstSNI TACGTA 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 2 cut(s) 589, 665
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 284
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 215, 364, 376
CciI TCATGA 1 cut(s) 604
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 3 cut(s) 259, 587, 663
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 154, 470
CviAII CATG 3 cut(s) 7, 130, 605
CviQI GTAC 2 cut(s) 154, 470
DdeI CTNAG 3 cut(s) 12, 367, 458
DpnI GATC 2 cut(s) 5, 46
DpnII GATC 2 cut(s) 3, 44
DraI TTTAAA 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 61, 243
EarI CTCTTC 2 cut(s) 61, 243
Eco105I TACGTA 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 663
EcoRII CCWGG 2 cut(s) 519, 583
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 3 cut(s) 10, 133, 608
FaiI YATR 8 cut(s) 8, 131, 251, 383, 385, 402, 483, 606
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 3 cut(s) 6, 129, 604
FauNDI CATATG 1 cut(s) 383
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 88, 188
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 88, 188
FspBI CTAG 4 cut(s) 198, 204, 210, 228
GluI GCNGC 2 cut(s) 88, 188
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 2 cut(s) 589, 665
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 3 cut(s) 10, 133, 608
HpaII CCGG 1 cut(s) 214
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 3 cut(s) 118, 178, 472
Hpy188I TCNGA 2 cut(s) 143, 268
Hpy188III TCNNGA 2 cut(s) 179, 605
Hpy8I GTNNAC 3 cut(s) 118, 178, 472
HpyAV CCTTC 3 cut(s) 231, 350, 654
HpyCH4IV ACGT 3 cut(s) 156, 390, 615
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 102, 111, 671
HpyF3I CTNAG 3 cut(s) 12, 367, 458
HpySE526I ACGT 3 cut(s) 156, 390, 615
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 3 cut(s) 10, 133, 608
KroI GCCGGC 1 cut(s) 213
KroNI GCCGGC 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 44
LmnI GCTCC 3 cut(s) 269, 399, 535
LpnPI CCDG 9 cut(s) 115, 227, 376, 388, 410, 506, 533, 570, 597
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 414
MaeI CTAG 4 cut(s) 198, 204, 210, 228
MaeII ACGT 3 cut(s) 156, 390, 615
MaeIII GTNAC 2 cut(s) 386, 596
MalI GATC 2 cut(s) 5, 46
MbiI CCGCTC 1 cut(s) 264
MboI GATC 2 cut(s) 3, 44
MboII GAAGA 4 cut(s) 78, 134, 230, 451
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 1 cut(s) 525
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 12, 310, 313, 676
MroNI GCCGGC 1 cut(s) 213
MseI TTAA 4 cut(s) 300, 326, 452, 641
MslI CAYNNNNRTG 2 cut(s) 384, 603
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 521, 585
MvaI CCWGG 2 cut(s) 521, 585
MwoI GCNNNNNNNGC 4 cut(s) 93, 102, 111, 671
NaeI GCCGGC 1 cut(s) 215
NdeI CATATG 1 cut(s) 383
NdeII GATC 2 cut(s) 3, 44
NgoMIV GCCGGC 1 cut(s) 213
NlaIII CATG 3 cut(s) 10, 133, 608
NmuCI GTSAC 2 cut(s) 386, 596
NspV TTCGAA 1 cut(s) 357
OliI CACNNNNGTG 1 cut(s) 384
PagI TCATGA 1 cut(s) 604
PasI CCCWGGG 1 cut(s) 584
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 215
Pfl23II CGTACG 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 89, 189
Ppu21I YACGTR 2 cut(s) 157, 616
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 519, 583
PspGI CCWGG 2 cut(s) 519, 583
PspLI CGTACG 1 cut(s) 153
PspPI GGNCC 3 cut(s) 259, 587, 663
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 187
RsaI GTAC 2 cut(s) 155, 471
RsaNI GTAC 2 cut(s) 154, 470
RseI CAYNNNNRTG 2 cut(s) 384, 603
SaqAI TTAA 4 cut(s) 300, 326, 452, 641
SatI GCNGC 2 cut(s) 88, 188
Sau3AI GATC 2 cut(s) 3, 44
Sau96I GGNCC 3 cut(s) 259, 587, 663
ScrFI CCNGG 2 cut(s) 521, 585
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 357
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 2 cut(s) 384, 603
SnaBI TACGTA 1 cut(s) 157
Sse9I AATT 1 cut(s) 525
SsiI CCGC 2 cut(s) 87, 262
SspI AATATT 1 cut(s) 272
SspMI CTAG 4 cut(s) 198, 204, 210, 228
StyD4I CCNGG 2 cut(s) 519, 583
TaiI ACGT 3 cut(s) 159, 393, 618
TaqI TCGA 6 cut(s) 279, 312, 357, 495, 572, 627
TasI AATT 1 cut(s) 525
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 90
Tru1I TTAA 4 cut(s) 300, 326, 452, 641
Tru9I TTAA 4 cut(s) 300, 326, 452, 641
TseFI GTSAC 2 cut(s) 386, 596
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 2 cut(s) 386, 596
TspDTI ATGAA 2 cut(s) 525, 593
TspGWI ACGGA 2 cut(s) 555, 584
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 525
XspI CTAG 4 cut(s) 198, 204, 210, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.