MD15G1007800.v1.1

UPF0496 protein At1g20180-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011075
Physical Location & Seq
Reverse (-)
418415 .. 419220
806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1007800.v1.1.491

Sequence Viewer

Length: 336 bp
ATGATTGGAATCGTGGTGGCGCCGGCGCTCATAGCCTGCTCGTTGGGTTTGTGCGCGAGAAAAATGGACTCCGCAGCGGAGTGGTTGAAGACTAGGTTTCCCGAGAGCCACGGGCAGCAACTTGACGTGGCGGCGAAAGGGGTTTATATTTTGATCAATGATTTCGATACAATGAGCCGGATGGTGAGGCGGTTGTACGACGAGGTGGAGCACAGGAAAGCTGTCGCCAGAATGTGTGTTAGCAGTGTGAGGAACATAATTAGTACTAATAATGGTGGATCATCTTCAAACTGTGACATATTTAAAGAAGGTGGTGAGGGAATTTCATGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

112

Amino Acids

12.11

Weight (kDa)

6.72

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20180 AT1G20180
fragaria_vesca FvH4_2g38050
malus_domestica MD03G1275300.v1.1 MD08G1009100.v1.1 MD15G1007800.v1.1 MD15G1007900.v1.1
prunus_persica Prupe.1G360800_v2.0.a1 Prupe.1G360800_v2.0.a1
pyrus_communis pycom15g00630
rosa_chinensis RchiOBHm_Chr6g0303541
rosa_laevigata RLG00000011075
rosa_multiflora Rmu_ssc0000114.1_g000034
rosa_roxburghii Rroxscaffold_7G00164660
rosa_rugosa Rorug06G0322100
rosa_samantha Rh6AG436500 Rh6BG466900 Rh6CG448500 Rh6DG435300
rosa_wichuraiana Rw6G037780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 56
AciI CCGC 4 cut(s) 72, 77, 131, 190
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 197, 265
AgsI TTSAA 2 cut(s) 88, 288
AjiI CACGTC 1 cut(s) 127
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 213
AlwI GGATC 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 74, 115
ApoI RAATTY 1 cut(s) 321
AspLEI GCGC 3 cut(s) 22, 28, 56
AsuHPI GGTGA 2 cut(s) 196, 326
AvaI CYCGRG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 86, 127
BccI CCATC 1 cut(s) 175
BclI TGATCA 1 cut(s) 153
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 2 cut(s) 23, 29
BisI GCNGC 3 cut(s) 75, 116, 132
BlsI GCNGC 3 cut(s) 76, 117, 133
BmcAI AGTACT 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 86, 127
Bsh1236I CGCG 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 2 cut(s) 23, 178
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 153, 278
BspACI CCGC 4 cut(s) 72, 77, 131, 190
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 153, 278
BssNI GRCGYC 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 24, 37
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 2 cut(s) 23, 29
BstHHI GCGC 3 cut(s) 22, 28, 56
BstKTI GATC 2 cut(s) 156, 281
BstMBI GATC 2 cut(s) 153, 278
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 86, 127
BstV2I GAAGAC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 24, 37
CfoI GCGC 3 cut(s) 22, 28, 56
Cfr10I RCCGGY 1 cut(s) 22
Csp6I GTAC 2 cut(s) 196, 264
CviAII CATG 1 cut(s) 327
CviJI RGCY 4 cut(s) 35, 108, 177, 221
CviKI_1 RGCY 4 cut(s) 35, 108, 177, 221
CviQI GTAC 2 cut(s) 196, 264
DinI GGCGCC 1 cut(s) 21
DpnI GATC 2 cut(s) 155, 280
DpnII GATC 2 cut(s) 153, 278
DraI TTTAAA 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 101
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
FaeI CATG 1 cut(s) 330
FaiI YATR 5 cut(s) 32, 147, 257, 299, 328
FatI CATG 1 cut(s) 326
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 75, 116, 132
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 3 cut(s) 75, 116, 132
FspBI CTAG 1 cut(s) 93
GlaI GCGC 3 cut(s) 21, 27, 55
GluI GCNGC 3 cut(s) 75, 116, 132
HaeII RGCGCY 2 cut(s) 23, 29
HapII CCGG 2 cut(s) 23, 178
HhaI GCGC 3 cut(s) 22, 28, 56
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 1 cut(s) 330
Hin6I GCGC 3 cut(s) 20, 26, 54
HinP1I GCGC 3 cut(s) 20, 26, 54
HinfI GANTC 2 cut(s) 9, 68
HpaII CCGG 2 cut(s) 23, 178
HphI GGTGA 2 cut(s) 196, 326
Hpy188III TCNNGA 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 330
HspAI GCGC 3 cut(s) 20, 26, 54
KasI GGCGCC 1 cut(s) 19
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 2 cut(s) 153, 278
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 36, 49, 191, 199, 241
Lsp1109I GCAGC 2 cut(s) 86, 127
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 155, 280
MboI GATC 2 cut(s) 153, 278
MboII GAAGA 2 cut(s) 100, 276
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 258, 321
Mly113I GGCGCC 1 cut(s) 20
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 4 cut(s) 180, 196, 243, 310
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 23, 178
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 32
NaeI GCCGGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 20
NdeII GATC 2 cut(s) 153, 278
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 3 cut(s) 76, 117, 133
PleI GAGTC 1 cut(s) 62
PluTI GGCGCC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 21
RsaI GTAC 2 cut(s) 197, 265
RsaNI GTAC 2 cut(s) 196, 264
RseI CAYNNNNRTG 1 cut(s) 331
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 75, 116, 132
Sau3AI GATC 2 cut(s) 153, 278
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 213
SetI ASST 5 cut(s) 98, 129, 207, 223, 313
SfoI GGCGCC 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 331
Sse9I AATT 2 cut(s) 258, 321
SsiI CCGC 4 cut(s) 72, 77, 131, 190
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 165
TasI AATT 2 cut(s) 258, 321
TatI WGTACW 1 cut(s) 263
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 74, 115
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 321
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.