Rorug06G0322100

UPF0496 protein At1g20180-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011075
Physical Location & Seq
Forward (+)
47375012 .. 47377729
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0322100.1

Sequence Viewer

Length: 873 bp
ATGTCTCCCTTTGAACATGGCGAGTTTTTTGTTCTTGATGATGGTGGAGAGGTATTTTACCCTTCCTCTTTACAAATAGGTGGTGATATGAACCTGGCTGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAATAAGAAGCAGCAACAAAGGATTATAGTCTTTGCTGGAAGTGCTGTTAAACATGAAAAGAAGACTTTGGAGATGATTGGAAGAAAGTTAAAGAAGAACAGTGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAATCAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATTAAGTCTATTGTTGAAGCTTCAAAGCCGTGGCCATCGGTGAGCATGTCCAGGTGGTTACTCACGGTGAATCATGCCTTACCATTTGCCTCTCTTCAAATGTCTGTGCAGGAAGGTGAAAAAGATTCTGCTAGCGATAAAGATATGAGTAAATTATTGGCTGATCAGTCTTTTGTGTCTTCTATCCTTGCCTCGCTTCCAGGGGTTGACCCAAATGATCCTTCAGTAAGAGACTTGCTTGCTTCTATGCAAAACCAGTCAGAGAGGGAGTTTACGAATTTTGTTGATGGTGATGGTGTTGGTGACATTGATGACACTACTACTCAACAACAAGCAGAAGAGCAGCTGAATTTGAATGTTGTCATTGTTTATATGCCTTGTATCAAGTTTATTCATCTTGGATGCAAGCTTTTGCCTTGCATTGATCTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

290

Amino Acids

31.52

Weight (kDa)

4.84

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20180 AT1G20180
fragaria_vesca FvH4_2g38050
malus_domestica MD03G1275300.v1.1 MD08G1009100.v1.1 MD15G1007800.v1.1 MD15G1007900.v1.1
prunus_persica Prupe.1G360800_v2.0.a1 Prupe.1G360800_v2.0.a1
pyrus_communis pycom15g00630
rosa_chinensis RchiOBHm_Chr6g0303541
rosa_laevigata RLG00000011075
rosa_multiflora Rmu_ssc0000114.1_g000034
rosa_roxburghii Rroxscaffold_7G00164660
rosa_rugosa Rorug06G0322100
rosa_samantha Rh6AG436500 Rh6BG466900 Rh6CG448500 Rh6DG435300
rosa_wichuraiana Rw6G037780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 470
AcsI RAATTY 2 cut(s) 715, 787
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 2 cut(s) 384, 394
AgsI TTSAA 5 cut(s) 14, 455, 462, 536, 793
AjnI CCWGG 3 cut(s) 93, 488, 637
AjuI GAANNNNNNNTTGG 4 cut(s) 358, 390, 643, 675
AluBI AGCT 4 cut(s) 298, 458, 784, 847
AluI AGCT 4 cut(s) 298, 458, 784, 847
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 9, 663
AlwI GGATC 1 cut(s) 650
AoxI GGCC 2 cut(s) 123, 470
ApeKI GCWGC 4 cut(s) 98, 151, 314, 781
ApoI RAATTY 2 cut(s) 715, 787
AseI ATTAAT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 124, 362
AsuHPI GGTGA 7 cut(s) 95, 281, 490, 517, 566, 740, 752
AsuNHI GCTAGC 1 cut(s) 569
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 472
BbsI GAAGAC 2 cut(s) 209, 609
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 4 cut(s) 85, 163, 301, 793
BccI CCATC 5 cut(s) 35, 407, 481, 719, 725
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 3 cut(s) 95, 490, 639
BclI TGATCA 1 cut(s) 601
BcoDI GTCTC 2 cut(s) 9, 663
BfaI CTAG 2 cut(s) 299, 570
BfmI CTRYAG 1 cut(s) 869
BisI GCNGC 4 cut(s) 99, 152, 315, 782
BlsI GCNGC 4 cut(s) 100, 153, 316, 783
Bme1390I CCNGG 3 cut(s) 95, 490, 639
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 124, 362
BmrFI CCNGG 3 cut(s) 95, 490, 639
BmsI GCATC 1 cut(s) 830
BmtI GCTAGC 1 cut(s) 573
BpiI GAAGAC 2 cut(s) 209, 609
BpmI CTGGAG 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 467, 638
Bse1I ACTGG 2 cut(s) 412, 694
BseBI CCWGG 3 cut(s) 95, 490, 639
BseDI CCNNGG 2 cut(s) 467, 638
BseGI GGATG 1 cut(s) 845
BseNI ACTGG 2 cut(s) 412, 694
BseXI GCAGC 4 cut(s) 85, 163, 301, 793
BsgI GTGCAG 1 cut(s) 566
BshFI GGCC 2 cut(s) 125, 472
BsiHKAI GWGCWC 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 9, 663
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 2 cut(s) 125, 472
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 3 cut(s) 601, 655, 862
BspANI GGCC 2 cut(s) 125, 472
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 1 cut(s) 650
BspQI GCTCTTC 1 cut(s) 771
BsrI ACTGG 2 cut(s) 412, 694
BssECI CCNNGG 2 cut(s) 467, 638
BssMI GATC 3 cut(s) 601, 655, 862
Bst2UI CCWGG 3 cut(s) 95, 490, 639
Bst4CI ACNGT 2 cut(s) 242, 505
Bst6I CTCTTC 2 cut(s) 537, 771
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 103, 571, 678, 845
BstDSI CCRYGG 1 cut(s) 467
BstF5I GGATG 1 cut(s) 845
BstKTI GATC 3 cut(s) 604, 658, 865
BstMAI GTCTC 2 cut(s) 9, 663
BstMBI GATC 3 cut(s) 601, 655, 862
BstMWI GCNNNNNNNGC 3 cut(s) 122, 182, 311
BstNI CCWGG 3 cut(s) 95, 490, 639
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 3 cut(s) 93, 488, 637
BstSFI CTRYAG 1 cut(s) 869
BstV1I GCAGC 4 cut(s) 85, 163, 301, 793
BstV2I GAAGAC 2 cut(s) 209, 609
BsuRI GGCC 2 cut(s) 125, 472
BtgI CCRYGG 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 845
BtsIMutI CAGTG 2 cut(s) 247, 405
Cac8I GCNNGC 4 cut(s) 103, 571, 678, 845
Cfr13I GGNCC 2 cut(s) 124, 362
Csp6I GTAC 2 cut(s) 383, 393
CviAII CATG 5 cut(s) 17, 194, 350, 484, 512
CviQI GTAC 2 cut(s) 383, 393
DpnI GATC 3 cut(s) 603, 657, 864
DpnII GATC 3 cut(s) 601, 655, 862
EaeI YGGCCR 1 cut(s) 470
Eam1104I CTCTTC 2 cut(s) 537, 771
EarI CTCTTC 2 cut(s) 537, 771
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 645
EcoRII CCWGG 3 cut(s) 93, 488, 637
EcoRV GATATC 1 cut(s) 256
FaeI CATG 5 cut(s) 20, 197, 353, 487, 515
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 5 cut(s) 16, 193, 349, 483, 511
FbaI TGATCA 1 cut(s) 601
Fnu4HI GCNGC 4 cut(s) 99, 152, 315, 782
FokI GGATG 1 cut(s) 852
Fsp4HI GCNGC 4 cut(s) 99, 152, 315, 782
FspBI CTAG 2 cut(s) 299, 570
GluI GCNGC 4 cut(s) 99, 152, 315, 782
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 2 cut(s) 125, 472
Hin1II CATG 5 cut(s) 20, 197, 353, 487, 515
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 2 cut(s) 456, 845
HinfI GANTC 2 cut(s) 508, 563
HphI GGTGA 7 cut(s) 95, 281, 490, 517, 566, 740, 752
Hpy166II GTNNAC 4 cut(s) 322, 395, 646, 711
Hpy188I TCNGA 3 cut(s) 292, 379, 700
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 4 cut(s) 322, 395, 646, 711
HpyAV CCTTC 4 cut(s) 72, 413, 545, 669
HpyCH4III ACNGT 2 cut(s) 242, 505
HpyCH4V TGCA 4 cut(s) 547, 688, 843, 858
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 182, 311
Hsp92II CATG 5 cut(s) 20, 197, 353, 487, 515
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 3 cut(s) 601, 655, 862
LguI GCTCTTC 1 cut(s) 771
Lsp1109I GCAGC 4 cut(s) 85, 163, 301, 793
LweI GCATC 1 cut(s) 830
MaeI CTAG 2 cut(s) 299, 570
MaeIII GTNAC 2 cut(s) 495, 740
MalI GATC 3 cut(s) 603, 657, 864
MboI GATC 3 cut(s) 601, 655, 862
MfeI CAATTG 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 472
MluCI AATT 5 cut(s) 119, 262, 590, 715, 787
MluNI TGGCCA 1 cut(s) 472
MnlI CCTC 6 cut(s) 43, 76, 137, 538, 640, 696
Mox20I TGGCCA 1 cut(s) 472
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 472
MseI TTAA 5 cut(s) 189, 230, 261, 435, 441
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 472
MspA1I CMGCKG 1 cut(s) 784
MspR9I CCNGG 3 cut(s) 95, 490, 639
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 95, 490, 639
MwoI GCNNNNNNNGC 3 cut(s) 122, 182, 311
NdeII GATC 3 cut(s) 601, 655, 862
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 5 cut(s) 20, 197, 353, 487, 515
NmuCI GTSAC 1 cut(s) 740
NspI RCATGY 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 771
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 508, 563
PkrI GCNGC 4 cut(s) 100, 153, 316, 783
PshBI ATTAAT 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 93, 488, 637
PspGI CCWGG 3 cut(s) 93, 488, 637
PspPI GGNCC 2 cut(s) 124, 362
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 2 cut(s) 384, 394
RsaNI GTAC 2 cut(s) 383, 393
RseI CAYNNNNRTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 5 cut(s) 189, 230, 261, 435, 441
SatI GCNGC 4 cut(s) 99, 152, 315, 782
Sau3AI GATC 3 cut(s) 601, 655, 862
Sau96I GGNCC 2 cut(s) 124, 362
ScrFI CCNGG 3 cut(s) 95, 490, 639
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 1 cut(s) 830
SfcI CTRYAG 1 cut(s) 869
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 5 cut(s) 119, 262, 590, 715, 787
SspMI CTAG 2 cut(s) 299, 570
StyD4I CCNGG 3 cut(s) 93, 488, 637
TaaI ACNGT 2 cut(s) 242, 505
TasI AATT 5 cut(s) 119, 262, 590, 715, 787
TatI WGTACW 2 cut(s) 382, 392
TfiI GAWTC 2 cut(s) 508, 563
Tru1I TTAA 5 cut(s) 189, 230, 261, 435, 441
Tru9I TTAA 5 cut(s) 189, 230, 261, 435, 441
TscAI CASTG 2 cut(s) 247, 412
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 4 cut(s) 98, 151, 314, 781
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 5 cut(s) 104, 210, 294, 338, 821
TspRI CASTG 2 cut(s) 247, 412
VpaK11BI GGWCC 1 cut(s) 362
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 2 cut(s) 715, 787
XceI RCATGY 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 2 cut(s) 299, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.