MD08G1069800.v1.1
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0014670
Physical Location & Seq
Forward (+)
5534895 .. 5535621
727 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1069800.v1.1.491

Sequence Viewer

Length: 492 bp
ATGTACAAGAAGAGGTTGGAAAGAACACAAGATTATCTGAGGTACTGCCTACAAGTAGCCCAAGATAATGGATTCTTGAACCTCATTCACAACTACAAAGATACTGGCCCACAACCATGCCCTCCCTCGTCCAATGTTGTCACTCCAAATGCCAGCCCACAGTTTTCAACAACTCAACGACACCATTCTTCTGATCCAGCTGCTGTTATTGATCAAGCCCAGCTAAATGGATGGTACATCCATCCAGAAGAGGGGAGTACGGCTCACATATACAAAGGAACATGGCATGGACTTGAAGTGGCAGTGAAATGCTTGTACCCTGATTTCTTTGAAACCAACGACAACGGTATCGCATTTTTCGCTCAAGAGCTGGAGACCTTAGGTAGGCAGCGACATCAATACATACTTCAGCTAATGGGTGCATGCCTCGATCCTCCTAACTACGCTTGGGTGGCGACGGAGTTCATGAACACTTCACGGCCCTGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.71

Weight (kDa)

6.13

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 84 - 158 4.4e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014670)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31250
malus_domestica MD08G1069800.v1.1 MD15G1052200.v1.1
prunus_persica Prupe.1G406200_v2.0.a1 Prupe.1G406200_v2.0.a1
pyrus_communis pycom15g05000
rosa_chinensis RchiOBHm_Chr6g0311551
rosa_laevigata RLG00000010394
rosa_multiflora Rmu_co8269907.1_g000001 Rmu_sc0007556.1_g000001
rosa_roxburghii Rroxscaffold_7G00157500
rosa_rugosa Rorug06G0389700
rosa_samantha Rh6AG504600 Rh6BG515300 Rh6CG521200 Rh6DG507100
rosa_wichuraiana Rw6G043940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 188, 425
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 5 cut(s) 5, 44, 236, 259, 317
AfiI CCNNNNNNNGG 2 cut(s) 251, 384
AgsI TTSAA 4 cut(s) 79, 168, 296, 332
AjnI CCWGG 1 cut(s) 482
AluBI AGCT 4 cut(s) 200, 223, 370, 412
AluI AGCT 4 cut(s) 200, 223, 370, 412
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 2 cut(s) 188, 425
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 106, 479
ApeKI GCWGC 2 cut(s) 200, 388
AspS9I GGNCC 2 cut(s) 107, 480
AxyI CCTNAGG 1 cut(s) 379
BaeI ACNNNNGTAYC 2 cut(s) 331, 364
BbvI GCAGC 2 cut(s) 187, 400
BccI CCATC 2 cut(s) 225, 249
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 484
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 368
BisI GCNGC 2 cut(s) 201, 389
BlsI GCNGC 2 cut(s) 202, 390
Bme1390I CCNGG 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 107, 480
BmrFI CCNGG 1 cut(s) 484
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BpmI CTGGAG 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 482
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 384
Bse1I ACTGG 1 cut(s) 109
Bse21I CCTNAGG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 3 cut(s) 236, 237, 241
BseLI CCNNNNNNNGG 2 cut(s) 251, 384
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 187, 400
BseYI CCCAGC 1 cut(s) 219
BshFI GGCC 2 cut(s) 108, 481
BslI CCNNNNNNNGG 2 cut(s) 251, 384
BsmAI GTCTC 1 cut(s) 368
BsnI GGCC 2 cut(s) 108, 481
Bso31I GGTCTC 1 cut(s) 368
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 193, 211, 430
BspANI GGCC 2 cut(s) 108, 481
BspCNI CTCAG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 465
BspPI GGATC 2 cut(s) 188, 425
BspTNI GGTCTC 1 cut(s) 368
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 3 cut(s) 193, 211, 430
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 2 cut(s) 162, 347
Bst6I CTCTTC 2 cut(s) 5, 243
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 154, 424
BstDEI CTNAG 2 cut(s) 38, 379
BstENI CCTNNNNNAGG 1 cut(s) 382
BstF5I GGATG 3 cut(s) 236, 237, 241
BstKTI GATC 3 cut(s) 196, 214, 433
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 3 cut(s) 193, 211, 430
BstMWI GCNNNNNNNGC 2 cut(s) 359, 452
BstNI CCWGG 1 cut(s) 484
BstNSI RCATGY 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 482
BstV1I GCAGC 2 cut(s) 187, 400
BstXI CCANNNNNNTGG 2 cut(s) 68, 227
Bsu36I CCTNAGG 1 cut(s) 379
BsuRI GGCC 2 cut(s) 108, 481
BtsCI GGATG 3 cut(s) 236, 237, 241
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 154, 424
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 107, 480
Csp6I GTAC 5 cut(s) 4, 43, 235, 258, 316
CviAII CATG 5 cut(s) 117, 282, 287, 423, 466
CviQI GTAC 5 cut(s) 4, 43, 235, 258, 316
DdeI CTNAG 2 cut(s) 38, 379
DpnI GATC 3 cut(s) 195, 213, 432
DpnII GATC 3 cut(s) 193, 211, 430
Eam1104I CTCTTC 2 cut(s) 5, 243
EarI CTCTTC 2 cut(s) 5, 243
Eco31I GGTCTC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 392
Eco81I CCTNAGG 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 482
FaeI CATG 5 cut(s) 120, 285, 290, 426, 469
FaiI YATR 8 cut(s) 118, 269, 271, 283, 288, 404, 424, 467
FatI CATG 5 cut(s) 116, 281, 286, 422, 465
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 201, 389
FokI GGATG 3 cut(s) 224, 228, 243
Fsp4HI GCNGC 2 cut(s) 201, 389
GluI GCNGC 2 cut(s) 201, 389
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 392
HaeIII GGCC 2 cut(s) 108, 481
Hin1II CATG 5 cut(s) 120, 285, 290, 426, 469
HinfI GANTC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 39, 193
Hpy188III TCNNGA 4 cut(s) 76, 245, 365, 466
Hpy99I CGWCG 1 cut(s) 460
HpyCH4III ACNGT 2 cut(s) 162, 347
HpyCH4V TGCA 1 cut(s) 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 452
HpyF3I CTNAG 2 cut(s) 38, 379
Hsp92II CATG 5 cut(s) 120, 285, 290, 426, 469
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 193, 211, 430
LpnPI CCDG 8 cut(s) 90, 166, 210, 233, 258, 333, 356, 469
Lsp1109I GCAGC 2 cut(s) 187, 400
MaeIII GTNAC 1 cut(s) 139
MalI GATC 3 cut(s) 195, 213, 432
MboI GATC 3 cut(s) 193, 211, 430
MboII GAAGA 3 cut(s) 22, 180, 260
MnlI CCTC 8 cut(s) 6, 33, 92, 132, 136, 244, 437, 444
MslI CAYNNNNRTG 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 484
MvaI CCWGG 1 cut(s) 484
MwoI GCNNNNNNNGC 2 cut(s) 359, 452
NdeII GATC 3 cut(s) 193, 211, 430
NlaIII CATG 5 cut(s) 120, 285, 290, 426, 469
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 1 cut(s) 426
PaeI GCATGC 1 cut(s) 426
PagI TCATGA 1 cut(s) 465
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 202, 390
Psp6I CCWGG 1 cut(s) 482
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 1 cut(s) 482
PspPI GGNCC 2 cut(s) 107, 480
PstNI CAGNNNCTG 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 5 cut(s) 5, 44, 236, 259, 317
RsaNI GTAC 5 cut(s) 4, 43, 235, 258, 316
RseI CAYNNNNRTG 1 cut(s) 115
SatI GCNGC 2 cut(s) 201, 389
Sau3AI GATC 3 cut(s) 193, 211, 430
Sau96I GGNCC 2 cut(s) 107, 480
ScrFI CCNGG 1 cut(s) 484
SetI ASST 9 cut(s) 17, 44, 84, 202, 225, 372, 380, 385, 414
SmiMI CAYNNNNRTG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SphI GCATGC 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 162, 347
TaqI TCGA 1 cut(s) 429
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 72
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 2 cut(s) 200, 388
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 454, 482
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 382
XceI RCATGY 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.