Rmu_co8269907.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8269907.1
OG0014670
Physical Location & Seq
Reverse (-)
1 .. 704
704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8269907.1_g000001.1.cds

Sequence Viewer

Length: 477 bp
atgggggcgtgccttgatcctcctaactatgcttgggtggtgaccgagttcttgagctcgacattgaaagagtggctgcacggccctggaaataggcaaaaagagaggatgattgagcttcctccattggaagagagggtggccagggcattggagatcgctcaggccatgcagtatctccacgaacaaaagcccaaggttcttcatcgcgacctaaagcctagcaacatctttttggatgatgctggtcacgtaagagttgcagattttggtcacgctcggttcttgagtgatgaggagatggcactaacaggggaaacaggtaagggagatggaacatatgtgtacatggcgccagaggtgatccaatgcgagccttacaatgagaaatgtgatgtatacagcttcgggattatactcaatgagattataactggaaattatccatatattgagacagattatggtcctactatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

159

Amino Acids

18.07

Weight (kDa)

4.8

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014670)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31250
malus_domestica MD08G1069800.v1.1 MD15G1052200.v1.1
prunus_persica Prupe.1G406200_v2.0.a1 Prupe.1G406200_v2.0.a1
pyrus_communis pycom15g05000
rosa_chinensis RchiOBHm_Chr6g0311551
rosa_laevigata RLG00000010394
rosa_multiflora Rmu_co8269907.1_g000001 Rmu_sc0007556.1_g000001
rosa_roxburghii Rroxscaffold_7G00157500
rosa_rugosa Rorug06G0389700
rosa_samantha Rh6AG504600 Rh6BG515300 Rh6CG521200 Rh6DG507100
rosa_wichuraiana Rw6G043940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 352
AccI GTMKAC 1 cut(s) 399
AccII CGCG 1 cut(s) 210
AclWI GGATC 2 cut(s) 11, 358
AcoI YGGCCR 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 353
AfaI GTAC 1 cut(s) 347
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 2 cut(s) 85, 143
AluBI AGCT 3 cut(s) 57, 118, 405
AluI AGCT 3 cut(s) 57, 118, 405
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 2 cut(s) 11, 358
AoxI GGCC 3 cut(s) 82, 141, 165
ApeKI GCWGC 1 cut(s) 76
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 83, 467
AsuHPI GGTGA 2 cut(s) 52, 373
AvaII GGWCC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 143
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 63
BccI CCATC 2 cut(s) 295, 326
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 87, 145
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 356
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 87, 145
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 83, 467
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 2 cut(s) 87, 145
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 73, 307
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 85, 144, 195
Bse1I ACTGG 1 cut(s) 439
BseBI CCWGG 2 cut(s) 87, 145
BseDI CCNNGG 3 cut(s) 85, 144, 195
BseGI GGATG 2 cut(s) 114, 244
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 63
BsgI GTGCAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 3 cut(s) 84, 143, 167
BshNI GGYRCC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 449
BsnI GGCC 3 cut(s) 84, 143, 167
Bsp1286I GDGCHC 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 3 cut(s) 16, 156, 363
Bsp68I TCGCGA 1 cut(s) 210
BspANI GGCC 3 cut(s) 84, 143, 167
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 2 cut(s) 11, 358
BspT107I GGYRCC 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 85, 144, 195
BssMI GATC 3 cut(s) 16, 156, 363
BssNAI GTATAC 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 195
Bst1107I GTATAC 1 cut(s) 400
Bst2UI CCWGG 2 cut(s) 87, 145
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 10, 374
BstDEI CTNAG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 2 cut(s) 114, 244
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 3 cut(s) 19, 159, 366
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 16, 156, 363
BstNI CCWGG 2 cut(s) 87, 145
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 85, 143
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 151
BstZ17I GTATAC 1 cut(s) 400
BsuRI GGCC 3 cut(s) 84, 143, 167
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 114, 244
BtuMI TCGCGA 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 10, 374
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 83, 467
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 169, 349
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 162
DinI GGCGCC 1 cut(s) 354
DpnI GATC 3 cut(s) 18, 158, 365
DpnII GATC 3 cut(s) 16, 156, 363
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 57
EcoO65I GGTNACC 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 85, 143
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 354
EheI GGCGCC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 172, 352
FatI CATG 2 cut(s) 168, 348
FauNDI CATATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 2 cut(s) 121, 251
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 3 cut(s) 84, 143, 167
HhaI GCGC 1 cut(s) 355
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 2 cut(s) 172, 352
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HphI GGTGA 2 cut(s) 52, 373
Hpy166II GTNNAC 2 cut(s) 346, 400
Hpy188III TCNNGA 4 cut(s) 52, 209, 286, 409
Hpy8I GTNNAC 2 cut(s) 346, 400
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 79, 172, 263
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 2 cut(s) 172, 352
HspAI GCGC 1 cut(s) 353
KasI GGCGCC 1 cut(s) 352
Kzo9I GATC 3 cut(s) 16, 156, 363
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 222
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 40, 248, 272
MalI GATC 3 cut(s) 18, 158, 365
MboI GATC 3 cut(s) 16, 156, 363
MboII GAAGA 2 cut(s) 143, 194
MhlI GDGCHC 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 1 cut(s) 439
MluNI TGGCCA 1 cut(s) 143
Mly113I GGCGCC 1 cut(s) 353
MnlI CCTC 6 cut(s) 30, 99, 129, 132, 289, 352
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 87, 145
MvaI CCWGG 2 cut(s) 87, 145
MvnI CGCG 1 cut(s) 210
NarI GGCGCC 1 cut(s) 353
NdeI CATATG 1 cut(s) 340
NdeII GATC 3 cut(s) 16, 156, 363
NlaIII CATG 2 cut(s) 172, 352
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 3 cut(s) 40, 248, 272
NruI TCGCGA 1 cut(s) 210
PkrI GCNGC 1 cut(s) 78
PluTI GGCGCC 1 cut(s) 356
Ppu21I YACGTR 1 cut(s) 253
PsiI TTATAA 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 85, 143
PspEI GGTNACC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 85, 143
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 2 cut(s) 83, 467
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SacI GAGCTC 1 cut(s) 59
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 3 cut(s) 16, 156, 363
Sau96I GGNCC 2 cut(s) 83, 467
ScrFI CCNGG 2 cut(s) 87, 145
SduI GDGCHC 1 cut(s) 59
SetI ASST 8 cut(s) 59, 120, 201, 216, 255, 325, 363, 407
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 354
SinI GGWCC 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 52, 286
SmoI CTYRAG 2 cut(s) 52, 286
Sse9I AATT 1 cut(s) 439
SspDI GGCGCC 1 cut(s) 352
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 85, 143
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 59
TaqII GACCGA 1 cut(s) 59
TasI AATT 1 cut(s) 439
TatI WGTACW 1 cut(s) 345
TseFI GTSAC 3 cut(s) 40, 248, 272
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 3 cut(s) 40, 248, 272
TspDTI ATGAA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.