RchiOBHm_Chr6g0311551
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014670
Physical Location & Seq
Forward (+)
68423624 .. 68425191
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28020

Sequence Viewer

Length: 1131 bp
ATGAAGGTGGCAGAACTGGAAAAGAAATTAGCAAAGGAGAAAGAGCTTCGGATGATGTACATAAAGAAATTGGAAAGAACACAAGATTATTTGAGGTATTGTCTACAAGTAGCCCAAGAAAATGGGTTTTTGGACCTTGTACTCCATAACAAAGATCATGCCGACACTGTTAACAATGCCACTGGTAATACCAGTCCTCAATTGCCAACTACTCCTCTGCACCAGCACCACCCACCTTCTGATCTAGATGCTCTCATCGATCAAGCCAAGCTAAATGGATGGTTCATAAATACAGATGAGATTGAATTTGAAGAGAAGATAGGGCAGGGGAGCACAGCACAGATATACAAAGCAACATGGCATGGACTTGATGTCGCGGTGAAATGCATAGAACCTGAATTCTTTGAATCAAACGAGAATGGTGTCTCATTTTTCGCTCAAGAGCTCGATACGTTATGTAGGCAGCGTCATCGGTACGTGCTTCATCTAATGGGGGCGTGCCTTGATCCTCCTAACTATGCTTGGGTGGTGACCGAGTTCTTGAGCTCGACATTGAAAGAGTGGCTGCACGGCCCTGGAAATAGGCAAAAAGAGAGGATGATTGAGCTTCCTCCATTGGAAGAGAGGGTGGCCAGGGCATTGGAGATCGCTCAGGCCATGCAGTATCTCCACGAACAAAAGCCTAAGGTTCTTCATCGCGACCTAAAGCCTAGCAACATCTTTTTGGATGACGCTGGTCACGTAAGAGTTGCAGATTTTGGTCACGCTCGGTTCTTGAGTGATGAGGAGATGGCACTAACAGGGGAAACAGGAACATATGTGTACATGGCGCCAGAGGTGATCCAATGCGAGCCTTACAATGAGAAATGTGATGTATACAGCTTCGGGATTATACTCAATGAGATTATAACTGGAAATTATCCATATATTGAGACAGATTATGGTCCTACTATGATTGCCATGGAAGTTGTGGAGGGTAAACTGAGGCCAAGACTTCCCGATGACAACGATGGCCAACTTGGGGAGCTAATTGAGCTGATTTGCCTTTCATGGGACGGAGATGCTTCTATTAGACCATCCTTTGCCACCATCACTTGCAATCTGAAGAAGCTCCAGAACAGAATACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

376

Amino Acids

43.01

Weight (kDa)

5.09

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 101 - 367 2.1e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 102 - 313 1.5e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014670)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31250
malus_domestica MD08G1069800.v1.1 MD15G1052200.v1.1
prunus_persica Prupe.1G406200_v2.0.a1 Prupe.1G406200_v2.0.a1
pyrus_communis pycom15g05000
rosa_chinensis RchiOBHm_Chr6g0311551
rosa_laevigata RLG00000010394
rosa_multiflora Rmu_co8269907.1_g000001 Rmu_sc0007556.1_g000001
rosa_roxburghii Rroxscaffold_7G00157500
rosa_rugosa Rorug06G0389700
rosa_samantha Rh6AG504600 Rh6BG515300 Rh6CG521200 Rh6DG507100
rosa_wichuraiana Rw6G043940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 908
AccB1I GGYRCC 1 cut(s) 829
AccI GTMKAC 2 cut(s) 103, 876
AccII CGCG 2 cut(s) 377, 699
AciI CCGC 1 cut(s) 377
AclWI GGATC 2 cut(s) 500, 835
AcoI YGGCCR 2 cut(s) 630, 1012
AcsI RAATTY 2 cut(s) 305, 398
AcuI CTGAAG 1 cut(s) 1124
AcyI GRCGYC 1 cut(s) 830
AfaI GTAC 4 cut(s) 59, 141, 476, 824
AfiI CCNNNNNNNGG 2 cut(s) 1021, 1051
AgsI TTSAA 4 cut(s) 305, 311, 407, 556
AhdI GACNNNNNGTC 1 cut(s) 371
AjnI CCWGG 2 cut(s) 574, 632
AluBI AGCT 9 cut(s) 46, 271, 445, 546, 607, 882, 1027, 1036, 1111
AluI AGCT 9 cut(s) 46, 271, 445, 546, 607, 882, 1027, 1036, 1111
Alw21I GWGCWC 3 cut(s) 335, 447, 548
Alw26I GTCTC 2 cut(s) 430, 926
AlwI GGATC 2 cut(s) 500, 835
AoxI GGCC 5 cut(s) 571, 630, 654, 986, 1012
ApeKI GCWGC 2 cut(s) 463, 565
ApoI RAATTY 2 cut(s) 305, 398
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 3 cut(s) 133, 572, 944
AsuHPI GGTGA 3 cut(s) 391, 541, 850
AvaII GGWCC 2 cut(s) 133, 944
AxyI CCTNAGG 1 cut(s) 684
BalI TGGCCA 2 cut(s) 632, 1014
BanI GGYRCC 1 cut(s) 829
BanII GRGCYC 2 cut(s) 447, 548
Bbv12I GWGCWC 3 cut(s) 335, 447, 548
BbvI GCAGC 2 cut(s) 475, 552
BccI CCATC 5 cut(s) 273, 784, 1004, 1084, 1097
BceAI ACGGC 1 cut(s) 586
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 2 cut(s) 576, 634
BcoDI GTCTC 2 cut(s) 430, 926
BfaI CTAG 2 cut(s) 245, 711
BfmI CTRYAG 1 cut(s) 1127
BfoI RGCGCY 1 cut(s) 833
BisI GCNGC 2 cut(s) 464, 566
BlsI GCNGC 2 cut(s) 465, 567
Bme1390I CCNGG 2 cut(s) 576, 634
Bme18I GGWCC 2 cut(s) 133, 944
BmeRI GACNNNNNGTC 1 cut(s) 371
BmgT120I GGNCC 3 cut(s) 133, 572, 944
BmiI GGNNCC 1 cut(s) 831
BmrFI CCNGG 2 cut(s) 576, 634
BmsI GCATC 2 cut(s) 238, 1051
BoxI GACNNNNGTC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 1097
Bpu10I CCTNAGC 1 cut(s) 651
BpuEI CTTGAG 3 cut(s) 423, 562, 796
Bsa29I ATCGAT 1 cut(s) 258
BsaAI YACGTR 2 cut(s) 478, 742
BsaHI GRCGYC 1 cut(s) 830
BsaJI CCNNGG 3 cut(s) 574, 633, 960
Bsc4I CCNNNNNNNGG 2 cut(s) 1021, 1051
Bse1I ACTGG 4 cut(s) 21, 187, 192, 916
Bse21I CCTNAGG 1 cut(s) 684
BseBI CCWGG 2 cut(s) 576, 634
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 574, 633, 960
BseGI GGATG 5 cut(s) 57, 284, 603, 733, 1076
BseLI CCNNNNNNNGG 2 cut(s) 1021, 1051
BseMII CTCAG 2 cut(s) 665, 974
BseNI ACTGG 4 cut(s) 21, 187, 192, 916
BseRI GAGGAG 2 cut(s) 204, 800
BseXI GCAGC 2 cut(s) 475, 552
BsgI GTGCAG 2 cut(s) 203, 551
Bsh1236I CGCG 2 cut(s) 377, 699
BshFI GGCC 5 cut(s) 573, 632, 656, 988, 1014
BshNI GGYRCC 1 cut(s) 829
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 3 cut(s) 335, 447, 548
BslFI GGGAC 1 cut(s) 1067
BslI CCNNNNNNNGG 2 cut(s) 1021, 1051
BsmAI GTCTC 2 cut(s) 430, 926
BsmFI GGGAC 1 cut(s) 1067
BsnI GGCC 5 cut(s) 573, 632, 656, 988, 1014
Bsp1286I GDGCHC 3 cut(s) 335, 447, 548
Bsp1407I TGTACA 2 cut(s) 57, 822
Bsp143I GATC 6 cut(s) 154, 241, 259, 505, 645, 840
Bsp19I CCATGG 1 cut(s) 960
Bsp68I TCGCGA 1 cut(s) 699
BspACI CCGC 1 cut(s) 377
BspANI GGCC 5 cut(s) 573, 632, 656, 988, 1014
BspCNI CTCAG 2 cut(s) 664, 975
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 2 cut(s) 377, 699
BspLI GGNNCC 1 cut(s) 831
BspPI GGATC 2 cut(s) 500, 835
BspT107I GGYRCC 1 cut(s) 829
BsrGI TGTACA 2 cut(s) 57, 822
BsrI ACTGG 4 cut(s) 21, 187, 192, 916
BssECI CCNNGG 3 cut(s) 574, 633, 960
BssMI GATC 6 cut(s) 154, 241, 259, 505, 645, 840
BssNAI GTATAC 1 cut(s) 877
BssNI GRCGYC 1 cut(s) 830
BssT1I CCWWGG 1 cut(s) 960
Bst1107I GTATAC 1 cut(s) 877
Bst2UI CCWGG 2 cut(s) 576, 634
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 306, 615
BstACI GRCGYC 1 cut(s) 830
BstAUI TGTACA 2 cut(s) 57, 822
BstBAI YACGTR 2 cut(s) 478, 742
BstC8I GCNNGC 2 cut(s) 499, 851
BstDEI CTNAG 3 cut(s) 651, 684, 983
BstDSI CCRYGG 1 cut(s) 960
BstEII GGTNACC 1 cut(s) 529
BstF5I GGATG 5 cut(s) 57, 284, 603, 733, 1076
BstFNI CGCG 2 cut(s) 377, 699
BstH2I RGCGCY 1 cut(s) 833
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 6 cut(s) 157, 244, 262, 508, 648, 843
BstMAI GTCTC 2 cut(s) 430, 926
BstMBI GATC 6 cut(s) 154, 241, 259, 505, 645, 840
BstMWI GCNNNNNNNGC 1 cut(s) 1033
BstNI CCWGG 2 cut(s) 576, 634
BstPAI GACNNNNGTC 1 cut(s) 735
BstPI GGTNACC 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 574, 632
BstSFI CTRYAG 1 cut(s) 1127
BstUI CGCG 2 cut(s) 377, 699
BstV1I GCAGC 2 cut(s) 475, 552
BstXI CCANNNNNNTGG 2 cut(s) 122, 640
BstZ17I GTATAC 1 cut(s) 877
Bsu15I ATCGAT 1 cut(s) 258
Bsu36I CCTNAGG 1 cut(s) 684
BsuRI GGCC 5 cut(s) 573, 632, 656, 988, 1014
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 960
BtgZI GCGATG 1 cut(s) 680
BtsCI GGATG 5 cut(s) 57, 284, 603, 733, 1076
BtsIMutI CAGTG 2 cut(s) 165, 180
BtuMI TCGCGA 1 cut(s) 699
Cac8I GCNNGC 2 cut(s) 499, 851
CfoI GCGC 1 cut(s) 832
Cfr13I GGNCC 3 cut(s) 133, 572, 944
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 2 cut(s) 455, 740
Csp6I GTAC 4 cut(s) 58, 140, 475, 823
CviAII CATG 7 cut(s) 158, 357, 362, 658, 826, 961, 1050
CviQI GTAC 4 cut(s) 58, 140, 475, 823
DdeI CTNAG 3 cut(s) 651, 684, 983
DinI GGCGCC 1 cut(s) 831
DpnI GATC 6 cut(s) 156, 243, 261, 507, 647, 842
DpnII GATC 6 cut(s) 154, 241, 259, 505, 645, 840
DriI GACNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 2 cut(s) 630, 1012
Eam1104I CTCTTC 2 cut(s) 306, 615
Eam1105I GACNNNNNGTC 1 cut(s) 371
EarI CTCTTC 2 cut(s) 306, 615
Ecl136II GAGCTC 2 cut(s) 445, 546
Eco130I CCWWGG 1 cut(s) 960
Eco24I GRGCYC 2 cut(s) 447, 548
Eco47I GGWCC 2 cut(s) 133, 944
Eco53kI GAGCTC 2 cut(s) 445, 546
Eco57I CTGAAG 1 cut(s) 1124
Eco81I CCTNAGG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 529
EcoICRI GAGCTC 2 cut(s) 445, 546
EcoO65I GGTNACC 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 574, 632
EcoT14I CCWWGG 1 cut(s) 960
EcoT22I ATGCAT 1 cut(s) 389
EcoT38I GRGCYC 2 cut(s) 447, 548
EgeI GGCGCC 1 cut(s) 831
EheI GGCGCC 1 cut(s) 831
ErhI CCWWGG 1 cut(s) 960
FaeI CATG 7 cut(s) 161, 360, 365, 661, 829, 964, 1053
FaqI GGGAC 1 cut(s) 1067
FatI CATG 7 cut(s) 157, 356, 361, 657, 825, 960, 1049
FauNDI CATATG 1 cut(s) 817
FblI GTMKAC 2 cut(s) 103, 876
Fnu4HI GCNGC 2 cut(s) 464, 566
FokI GGATG 5 cut(s) 64, 291, 610, 740, 1063
FriOI GRGCYC 2 cut(s) 447, 548
Fsp4HI GCNGC 2 cut(s) 464, 566
FspBI CTAG 2 cut(s) 245, 711
GlaI GCGC 1 cut(s) 831
GluI GCNGC 2 cut(s) 464, 566
GsuI CTGGAG 1 cut(s) 1097
HaeII RGCGCY 1 cut(s) 833
HaeIII GGCC 5 cut(s) 573, 632, 656, 988, 1014
HgaI GACGC 2 cut(s) 455, 740
HhaI GCGC 1 cut(s) 832
Hin1I GRCGYC 1 cut(s) 830
Hin1II CATG 7 cut(s) 161, 360, 365, 661, 829, 964, 1053
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 407
HpaI GTTAAC 1 cut(s) 172
HphI GGTGA 3 cut(s) 391, 541, 850
Hpy166II GTNNAC 5 cut(s) 104, 172, 823, 877, 980
Hpy188I TCNGA 3 cut(s) 51, 241, 1104
Hpy188III TCNNGA 8 cut(s) 245, 440, 541, 698, 775, 886, 998, 1114
Hpy8I GTNNAC 5 cut(s) 104, 172, 823, 877, 980
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 3 cut(s) 452, 477, 741
HpyCH4V TGCA 6 cut(s) 220, 387, 568, 661, 752, 1098
HpyF10VI GCNNNNNNNGC 1 cut(s) 1033
HpyF3I CTNAG 3 cut(s) 651, 684, 983
HpySE526I ACGT 3 cut(s) 452, 477, 741
Hsp92I GRCGYC 1 cut(s) 830
Hsp92II CATG 7 cut(s) 161, 360, 365, 661, 829, 964, 1053
HspAI GCGC 1 cut(s) 830
KasI GGCGCC 1 cut(s) 829
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 6 cut(s) 154, 241, 259, 505, 645, 840
LmnI GCTCC 3 cut(s) 330, 1024, 1116
Lsp1109I GCAGC 2 cut(s) 475, 552
LweI GCATC 2 cut(s) 238, 1051
MaeI CTAG 2 cut(s) 245, 711
MaeII ACGT 3 cut(s) 452, 477, 741
MaeIII GTNAC 3 cut(s) 529, 737, 761
MalI GATC 6 cut(s) 156, 243, 261, 507, 647, 842
MboI GATC 6 cut(s) 154, 241, 259, 505, 645, 840
MboII GAAGA 5 cut(s) 323, 328, 632, 683, 1117
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 3 cut(s) 335, 447, 548
MlsI TGGCCA 2 cut(s) 632, 1014
MluCI AATT 7 cut(s) 26, 68, 200, 305, 398, 916, 1029
MluNI TGGCCA 2 cut(s) 632, 1014
Mly113I GGCGCC 1 cut(s) 830
Mox20I TGGCCA 2 cut(s) 632, 1014
Mph1103I ATGCAT 1 cut(s) 389
MscI TGGCCA 2 cut(s) 632, 1014
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 632, 1014
MspR9I CCNGG 2 cut(s) 576, 634
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 2 cut(s) 576, 634
MvnI CGCG 2 cut(s) 377, 699
MwoI GCNNNNNNNGC 1 cut(s) 1033
NarI GGCGCC 1 cut(s) 830
NcoI CCATGG 1 cut(s) 960
NdeI CATATG 1 cut(s) 817
NdeII GATC 6 cut(s) 154, 241, 259, 505, 645, 840
NlaIII CATG 7 cut(s) 161, 360, 365, 661, 829, 964, 1053
NlaIV GGNNCC 1 cut(s) 831
NmuCI GTSAC 3 cut(s) 529, 737, 761
NruI TCGCGA 1 cut(s) 699
NsiI ATGCAT 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 738
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 2 cut(s) 465, 567
PluTI GGCGCC 1 cut(s) 833
Ppu21I YACGTR 2 cut(s) 478, 742
PshAI GACNNNNGTC 1 cut(s) 735
PsiI TTATAA 1 cut(s) 908
Psp124BI GAGCTC 2 cut(s) 447, 548
Psp6I CCWGG 2 cut(s) 574, 632
PspEI GGTNACC 1 cut(s) 529
PspGI CCWGG 2 cut(s) 574, 632
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 3 cut(s) 133, 572, 944
RruI TCGCGA 1 cut(s) 699
RsaI GTAC 4 cut(s) 59, 141, 476, 824
RsaNI GTAC 4 cut(s) 58, 140, 475, 823
SacI GAGCTC 2 cut(s) 447, 548
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 464, 566
Sau3AI GATC 6 cut(s) 154, 241, 259, 505, 645, 840
Sau96I GGNCC 3 cut(s) 133, 572, 944
ScrFI CCNGG 2 cut(s) 576, 634
SduI GDGCHC 3 cut(s) 335, 447, 548
SfaNI GCATC 2 cut(s) 238, 1051
SfcI CTRYAG 1 cut(s) 1127
SfoI GGCGCC 1 cut(s) 831
SinI GGWCC 2 cut(s) 133, 944
SmlI CTYRAG 3 cut(s) 438, 541, 775
SmoI CTYRAG 3 cut(s) 438, 541, 775
Sse9I AATT 7 cut(s) 26, 68, 200, 305, 398, 916, 1029
SsiI CCGC 1 cut(s) 377
SspDI GGCGCC 1 cut(s) 829
SspMI CTAG 2 cut(s) 245, 711
SstI GAGCTC 2 cut(s) 447, 548
StyD4I CCNGG 2 cut(s) 574, 632
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 3 cut(s) 455, 480, 744
TaqI TCGA 3 cut(s) 258, 447, 548
TaqII GACCGA 1 cut(s) 548
TasI AATT 7 cut(s) 26, 68, 200, 305, 398, 916, 1029
TatI WGTACW 3 cut(s) 57, 139, 822
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 172, 187
TseFI GTSAC 3 cut(s) 529, 737, 761
TseI GCWGC 2 cut(s) 463, 565
Tsp45I GTSAC 3 cut(s) 529, 737, 761
TspDTI ATGAA 5 cut(s) 17, 274, 473, 683, 1038
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 2 cut(s) 172, 187
VpaK11BI GGWCC 2 cut(s) 133, 944
XapI RAATTY 2 cut(s) 305, 398
XbaI TCTAGA 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 967
XmiI GTMKAC 2 cut(s) 103, 876
XspI CTAG 2 cut(s) 245, 711
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.