Rorug06G0389700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014670
Physical Location & Seq
Forward (+)
53407739 .. 53410564
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0389700.1

Sequence Viewer

Length: 882 bp
ATGAAGTTCTCGAAGAGCCTCGGCATCCTGATCGAGGAGGCCTTGCCGGAATGGCGGGACAAGTTCTTGTCCTACAAGGACTTGAAGAAGCAATTGAAGCTGATCTACCCCAAAGACGGGGACAGGCCGCCGAGTAAACGGCCGAGATTGTCCGACGAGGAGGTGCGGACGGACGGCGGGGATTTCGCCGACGACAACGGCGGTGACGTTTCCAAGGCGGTCGCCGATTTCGTGAGGTTGTTAGAGAACGAAATGGACAAGTTCAATTCGTTTTTCGAGGAGAAAGAGGAAGAGTACGTTATTAGATGGAAGGAACTACAGGATAGGGTGGCAGAAGCCAAAGATTCAAATGAGGAGTTGATGAGAGTAGGCAGAGAAATAGTTGATTTTCATGGAGAGATGGTTTTGTTAGAGAACTACAGTGCACTTAATTATACAGGACTATTGAAGATTCTGAAGAAACATGACAAGCGAACCGGTGCTCTAATTCGGTTTCCCTTTGTCCAAAGGGTCATGCAACAGCCATTCTTCAGTACTGATGTACTCAATAAGCTCGTGAAGGAGTGTGAGGTGATGCTTGATCACGTCTTCTCCAGGAATGACCCATCAGGTCCATCCGAAGCAGCCAAAGCAGAAGAACAGTGCGACTCTGAGGCTGTGGCTGAAACTAGAGAAATTGTACTCAAAGCTCCTATAGAACTTGCAGAAATAAAGCAAATGGAGAGTGTGTACGGAAAGCAAACTGAAACCGCATTGCGTGTCTTGAAGGATGTTCGGAGTGGAAGCTCAACTGTTAGTGCATTTTCACTGCCGCCTTTGCAAATAAATGTGGTGGAGGAGGATTCGAAGAATATACATGCTTTACAACAAGAAGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

293

Amino Acids

33.51

Weight (kDa)

5.07

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 1 - 54 9.4e-08 SPX domain
SPX PF03105 125 - 169 8.4e-08 SPX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014670)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31250
malus_domestica MD08G1069800.v1.1 MD15G1052200.v1.1
prunus_persica Prupe.1G406200_v2.0.a1 Prupe.1G406200_v2.0.a1
pyrus_communis pycom15g05000
rosa_chinensis RchiOBHm_Chr6g0311551
rosa_laevigata RLG00000010394
rosa_multiflora Rmu_co8269907.1_g000001 Rmu_sc0007556.1_g000001
rosa_roxburghii Rroxscaffold_7G00157500
rosa_rugosa Rorug06G0389700
rosa_samantha Rh6AG504600 Rh6BG515300 Rh6CG521200 Rh6DG507100
rosa_wichuraiana Rw6G043940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 55, 128, 166, 177, 201, 218, 750, 812
AcoI YGGCCR 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 476, 514
AfaI GTAC 5 cut(s) 296, 535, 543, 681, 731
AfiI CCNNNNNNNGG 3 cut(s) 34, 116, 117
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 6 cut(s) 85, 97, 265, 348, 448, 766
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 593
AluBI AGCT 4 cut(s) 100, 553, 689, 786
AluI AGCT 4 cut(s) 100, 553, 689, 786
Alw21I GWGCWC 2 cut(s) 427, 484
Alw44I GTGCAC 1 cut(s) 423
AoxI GGCC 3 cut(s) 39, 125, 140
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 1 cut(s) 623
AsiGI ACCGGT 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 215, 583
AsuII TTCGAA 1 cut(s) 845
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 427
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BauI CACGAG 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 580
Bbv12I GWGCWC 2 cut(s) 427, 484
BbvI GCAGC 1 cut(s) 635
BccI CCATC 4 cut(s) 300, 394, 613, 622
BceAI ACGGC 3 cut(s) 155, 190, 214
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 595
BclI TGATCA 1 cut(s) 580
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 3 cut(s) 317, 418, 693
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 3 cut(s) 128, 624, 812
BlsI GCNGC 3 cut(s) 129, 625, 813
BmcAI AGTACT 1 cut(s) 535
Bme1390I CCNGG 1 cut(s) 595
Bme18I GGWCC 1 cut(s) 611
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 611
BmrFI CCNGG 1 cut(s) 595
BmsI GCATC 2 cut(s) 33, 564
BpiI GAAGAC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 577
Bpu14I TTCGAA 1 cut(s) 845
BsaJI CCNNGG 2 cut(s) 19, 213
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 6 cut(s) 387, 417, 575, 605, 713, 743
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 116, 117
Bse118I RCCGGY 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 752
BseBI CCWGG 1 cut(s) 595
BseDI CCNNGG 2 cut(s) 19, 213
BseGI GGATG 3 cut(s) 24, 614, 775
BseLI CCNNNNNNNGG 3 cut(s) 34, 116, 117
BseMI GCAATG 1 cut(s) 752
BseMII CTCAG 1 cut(s) 642
BseRI GAGGAG 5 cut(s) 50, 173, 293, 368, 851
BseSI GKGCMC 1 cut(s) 427
BseX3I CGGCCG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 635
Bsh1285I CGRYCG 2 cut(s) 143, 222
BshFI GGCC 3 cut(s) 41, 127, 142
BshTI ACCGGT 1 cut(s) 476
BsiEI CGRYCG 2 cut(s) 143, 222
BsiHKAI GWGCWC 2 cut(s) 427, 484
BsiSI CCGG 2 cut(s) 47, 477
BslFI GGGAC 2 cut(s) 71, 134
BslI CCNNNNNNNGG 3 cut(s) 34, 116, 117
BsmFI GGGAC 2 cut(s) 71, 134
BsnI GGCC 3 cut(s) 41, 127, 142
Bsp119I TTCGAA 1 cut(s) 845
Bsp1286I GDGCHC 2 cut(s) 427, 484
Bsp143I GATC 3 cut(s) 30, 102, 580
BspACI CCGC 8 cut(s) 55, 128, 166, 177, 201, 218, 750, 812
BspANI GGCC 3 cut(s) 41, 127, 142
BspCNI CTCAG 1 cut(s) 643
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 476
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 19, 213
BssMI GATC 3 cut(s) 30, 102, 580
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 595
Bst4CI ACNGT 3 cut(s) 422, 642, 793
Bst6I CTCTTC 2 cut(s) 8, 285
BstBI TTCGAA 1 cut(s) 845
BstDEI CTNAG 1 cut(s) 651
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 24, 614, 775
BstKTI GATC 3 cut(s) 33, 105, 583
BstMBI GATC 3 cut(s) 30, 102, 580
BstMCI CGRYCG 2 cut(s) 143, 222
BstMWI GCNNNNNNNGC 4 cut(s) 52, 97, 629, 817
BstNI CCWGG 1 cut(s) 595
BstNSI RCATGY 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 593
BstSFI CTRYAG 3 cut(s) 317, 418, 693
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 635
BstV2I GAAGAC 1 cut(s) 580
BstZI CGGCCG 1 cut(s) 140
BsuRI GGCC 3 cut(s) 41, 127, 142
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 24, 614, 775
BtsI GCAGTG 1 cut(s) 806
BtsIMutI CAGTG 3 cut(s) 427, 647, 806
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 611
Csp6I GTAC 5 cut(s) 295, 534, 542, 680, 730
CspAI ACCGGT 1 cut(s) 476
CviAII CATG 4 cut(s) 392, 464, 514, 857
CviQI GTAC 5 cut(s) 295, 534, 542, 680, 730
DdeI CTNAG 1 cut(s) 651
DpnI GATC 3 cut(s) 32, 104, 582
DpnII GATC 3 cut(s) 30, 102, 580
EaeI YGGCCR 1 cut(s) 140
EagI CGGCCG 1 cut(s) 140
Eam1104I CTCTTC 2 cut(s) 8, 285
EarI CTCTTC 2 cut(s) 8, 285
EclXI CGGCCG 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 611
Eco52I CGGCCG 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 476, 514
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 4 cut(s) 395, 467, 517, 860
FaiI YATR 7 cut(s) 393, 435, 465, 515, 695, 854, 858
FaqI GGGAC 2 cut(s) 71, 134
FatI CATG 4 cut(s) 391, 463, 513, 856
FauI CCCGC 2 cut(s) 48, 170
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 3 cut(s) 128, 624, 812
FokI GGATG 3 cut(s) 11, 601, 782
Fsp4HI GCNGC 3 cut(s) 128, 624, 812
FspBI CTAG 1 cut(s) 669
GluI GCNGC 3 cut(s) 128, 624, 812
GsuI CTGGAG 1 cut(s) 577
HaeIII GGCC 3 cut(s) 41, 127, 142
HapII CCGG 2 cut(s) 47, 477
Hin1II CATG 4 cut(s) 395, 467, 517, 860
HinfI GANTC 4 cut(s) 344, 451, 647, 842
HpaII CCGG 2 cut(s) 47, 477
HphI GGTGA 2 cut(s) 215, 583
Hpy166II GTNNAC 3 cut(s) 137, 425, 730
Hpy188I TCNGA 5 cut(s) 154, 456, 619, 652, 777
Hpy188III TCNNGA 5 cut(s) 10, 28, 232, 556, 763
Hpy8I GTNNAC 3 cut(s) 137, 425, 730
Hpy99I CGWCG 2 cut(s) 158, 194
HpyAV CCTTC 3 cut(s) 304, 553, 760
HpyCH4III ACNGT 3 cut(s) 422, 642, 793
HpyCH4IV ACGT 3 cut(s) 207, 297, 585
HpyCH4V TGCA 5 cut(s) 425, 517, 704, 800, 820
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 97, 629, 817
HpyF3I CTNAG 1 cut(s) 651
HpySE526I ACGT 3 cut(s) 207, 297, 585
Hsp92II CATG 4 cut(s) 395, 467, 517, 860
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 3 cut(s) 30, 102, 580
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 694
LpnPI CCDG 9 cut(s) 41, 60, 109, 305, 423, 490, 580, 594, 607
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 2 cut(s) 33, 564
MaeI CTAG 1 cut(s) 669
MaeII ACGT 3 cut(s) 207, 297, 585
MaeIII GTNAC 1 cut(s) 203
MalI GATC 3 cut(s) 32, 104, 582
MboI GATC 3 cut(s) 30, 102, 580
MboII GAAGA 9 cut(s) 25, 97, 302, 460, 469, 520, 580, 647, 859
MfeI CAATTG 1 cut(s) 92
MhlI GDGCHC 2 cut(s) 427, 484
MluCI AATT 5 cut(s) 92, 265, 430, 486, 675
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 177
MseI TTAA 1 cut(s) 429
MspI CCGG 2 cut(s) 47, 477
MspR9I CCNGG 1 cut(s) 595
MunI CAATTG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 595
MwoI GCNNNNNNNGC 4 cut(s) 52, 97, 629, 817
NdeII GATC 3 cut(s) 30, 102, 580
NlaIII CATG 4 cut(s) 395, 467, 517, 860
NmeAIII GCCGAG 2 cut(s) 156, 168
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 860
NspV TTCGAA 1 cut(s) 845
PceI AGGCCT 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 228
PfeI GAWTC 3 cut(s) 344, 451, 842
PfoI TCCNGGA 1 cut(s) 593
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 3 cut(s) 129, 625, 813
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 593
PspGI CCWGG 1 cut(s) 593
PspPI GGNCC 1 cut(s) 611
RsaI GTAC 5 cut(s) 296, 535, 543, 681, 731
RsaNI GTAC 5 cut(s) 295, 534, 542, 680, 730
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 3 cut(s) 128, 624, 812
Sau3AI GATC 3 cut(s) 30, 102, 580
Sau96I GGNCC 1 cut(s) 611
ScaI AGTACT 1 cut(s) 535
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 1 cut(s) 595
SduI GDGCHC 2 cut(s) 427, 484
SfaNI GCATC 2 cut(s) 33, 564
SfcI CTRYAG 3 cut(s) 317, 418, 693
SfuI TTCGAA 1 cut(s) 845
SinI GGWCC 1 cut(s) 611
Sse9I AATT 5 cut(s) 92, 265, 430, 486, 675
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 8 cut(s) 55, 128, 166, 177, 201, 218, 750, 812
SspMI CTAG 1 cut(s) 669
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 593
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 3 cut(s) 422, 642, 793
TaiI ACGT 3 cut(s) 210, 300, 588
TaqI TCGA 4 cut(s) 11, 33, 276, 845
TasI AATT 5 cut(s) 92, 265, 430, 486, 675
TatI WGTACW 3 cut(s) 533, 541, 679
TauI GCSGC 2 cut(s) 130, 814
TfiI GAWTC 3 cut(s) 344, 451, 842
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 427, 647, 813
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 17, 380
TspGWI ACGGA 2 cut(s) 185, 747
TspRI CASTG 3 cut(s) 427, 647, 813
VneI GTGCAC 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 611
XagI CCTNNNNNAGG 1 cut(s) 32
XceI RCATGY 1 cut(s) 860
XspI CTAG 1 cut(s) 669
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.