Rroxscaffold_7G00157500
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014670
Physical Location & Seq
Reverse (-)
1332207 .. 1333780
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157500.1

Sequence Viewer

Length: 1137 bp
ATGAAGGTGGTAGAGCTGGAAAAGAATTTAGCAAAGGAGAAAGAGCTTCGGATGATGTACAGAAAGAAATTGGAAAGAACACAAGATTATTTGAGGTATTGTCTACAAGTAGCCCAAGAAAATGGGTTTTTGGACCTTATACTCCATAACAAAGATCATGCCGACACTGTTAACAATGCCACTGGTAATGCCAGTCCTCAATTGCCAACTACTCCTCTGCACCAGCACCCGCACTACCCACCTTCTGATCTAGATGCTCTCATTGATCAAGCCAAGCTAAATGGATGGTTCATAAATCCAGATGAGATTGAATTTGAAGAGAAGATAGGGCAGGGGAGCACAGCACAGATATACAAAGCAACATGGCATGGACTTGATGTCGCGGTGAAATGCATAGAACCTGAATTCTTTGAATCAAACGAGAATGGTGTCTCATTTTTCGCTCAAGAGCTCGATACGTTATGTAGGCAGCGTCATCGGTACGTGCTTCATCTAATGGGGGCGTGCCTTGATCCTCCTTACTATGCTTGGGTGGTGACCGAGTTCTTGAGCTCGACATTGAAAGAGTGGCTGCACGGCCCTGGAAATAGGCAAAAAGAGAGGATGATTGAGCTTCCTCCATTGGAAGAGAGGGTGGCCAGGGCTTTGGAGATCGCTCAGGCCATGCAGTATCTCCACGAACAAAAGCCTAGGGTTCTTCATCGCGACCTAAAGCCTAGCAACATCTTTTTGGATGATGCTGGTCACGTAAGAGTTGCAGATTTTGGTCACGCTCGGTTCTTGAGTGATGAGGAGATGGCACTAACAGGGGAAACAGGAACATATGTGTACATGGCGCCAGAGGTGATCCAATGCGAGCCTTACAATGAGAAATGTGACGTATACAGCTTCGGGATTATACTCAATGAGATTATAACTGGAAATTATCCATACATTGAGACAGATCATGGTCCTACTATGATTGCAATGGAAGTTGTGGAGGGTAAACTGAGGCCAAGACTTCCCGATGACAACGATGGCCAACTTGGGGAGCTAATTGAGCTGATTTGCCTTTCATGGGACGGAGATGCTTCTATTAGACCATCCTTTGCCACCATCACGTGCAATCTGAAGAAGCTCCAGAACAGAATACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

43.36

Weight (kDa)

5.13

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 103 - 369 2.9e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 104 - 324 1.6e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014670)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31250
malus_domestica MD08G1069800.v1.1 MD15G1052200.v1.1
prunus_persica Prupe.1G406200_v2.0.a1 Prupe.1G406200_v2.0.a1
pyrus_communis pycom15g05000
rosa_chinensis RchiOBHm_Chr6g0311551
rosa_laevigata RLG00000010394
rosa_multiflora Rmu_co8269907.1_g000001 Rmu_sc0007556.1_g000001
rosa_roxburghii Rroxscaffold_7G00157500
rosa_rugosa Rorug06G0389700
rosa_samantha Rh6AG504600 Rh6BG515300 Rh6CG521200 Rh6DG507100
rosa_wichuraiana Rw6G043940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 914
AccB1I GGYRCC 1 cut(s) 835
AccI GTMKAC 2 cut(s) 103, 882
AccII CGCG 2 cut(s) 383, 705
AciI CCGC 2 cut(s) 230, 383
AclWI GGATC 2 cut(s) 506, 841
AcoI YGGCCR 2 cut(s) 636, 1018
AcsI RAATTY 3 cut(s) 25, 311, 404
AcuI CTGAAG 1 cut(s) 1130
AcvI CACGTG 1 cut(s) 1101
AcyI GRCGYC 1 cut(s) 836
AfaI GTAC 3 cut(s) 59, 482, 830
AfiI CCNNNNNNNGG 2 cut(s) 1027, 1057
AgsI TTSAA 4 cut(s) 311, 317, 413, 562
AhdI GACNNNNNGTC 1 cut(s) 377
AjnI CCWGG 2 cut(s) 580, 638
Alw21I GWGCWC 3 cut(s) 341, 453, 554
Alw26I GTCTC 2 cut(s) 436, 932
AlwI GGATC 2 cut(s) 506, 841
AoxI GGCC 5 cut(s) 577, 636, 660, 992, 1018
ApeKI GCWGC 2 cut(s) 469, 571
ApoI RAATTY 3 cut(s) 25, 311, 404
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 1 cut(s) 838
AspS9I GGNCC 3 cut(s) 133, 578, 950
AsuHPI GGTGA 3 cut(s) 397, 547, 856
AvaII GGWCC 2 cut(s) 133, 950
AvrII CCTAGG 1 cut(s) 689
BalI TGGCCA 2 cut(s) 638, 1020
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 2 cut(s) 453, 554
BbrPI CACGTG 1 cut(s) 1101
Bbv12I GWGCWC 3 cut(s) 341, 453, 554
BbvI GCAGC 2 cut(s) 481, 558
BccI CCATC 5 cut(s) 279, 790, 1010, 1090, 1103
BceAI ACGGC 1 cut(s) 592
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 582, 640
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 436, 932
BfaI CTAG 3 cut(s) 251, 690, 717
BfmI CTRYAG 1 cut(s) 1133
BfoI RGCGCY 1 cut(s) 839
BisI GCNGC 2 cut(s) 470, 572
BlnI CCTAGG 1 cut(s) 689
BlsI GCNGC 2 cut(s) 471, 573
Bme1390I CCNGG 2 cut(s) 582, 640
Bme18I GGWCC 2 cut(s) 133, 950
BmeRI GACNNNNNGTC 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 133, 578, 950
BmiI GGNNCC 1 cut(s) 837
BmrFI CCNGG 2 cut(s) 582, 640
BmsI GCATC 3 cut(s) 244, 727, 1057
BpmI CTGGAG 1 cut(s) 1103
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 3 cut(s) 429, 568, 802
BsaAI YACGTR 3 cut(s) 484, 748, 1101
BsaHI GRCGYC 1 cut(s) 836
BsaJI CCNNGG 3 cut(s) 580, 639, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 1027, 1057
Bse1I ACTGG 3 cut(s) 187, 192, 922
Bse3DI GCAATG 1 cut(s) 972
BseBI CCWGG 2 cut(s) 582, 640
BseDI CCNNGG 3 cut(s) 580, 639, 689
BseGI GGATG 5 cut(s) 57, 290, 609, 739, 1082
BseLI CCNNNNNNNGG 2 cut(s) 1027, 1057
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 2 cut(s) 671, 980
BseNI ACTGG 3 cut(s) 187, 192, 922
BseRI GAGGAG 2 cut(s) 204, 806
BseXI GCAGC 2 cut(s) 481, 558
BsgI GTGCAG 2 cut(s) 203, 557
Bsh1236I CGCG 2 cut(s) 383, 705
BshFI GGCC 5 cut(s) 579, 638, 662, 994, 1020
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 3 cut(s) 341, 453, 554
BslFI GGGAC 1 cut(s) 1073
BslI CCNNNNNNNGG 2 cut(s) 1027, 1057
BsmAI GTCTC 2 cut(s) 436, 932
BsmFI GGGAC 1 cut(s) 1073
BsnI GGCC 5 cut(s) 579, 638, 662, 994, 1020
Bsp1286I GDGCHC 3 cut(s) 341, 453, 554
Bsp1407I TGTACA 2 cut(s) 57, 828
Bsp143I GATC 7 cut(s) 154, 247, 265, 511, 651, 846, 943
Bsp68I TCGCGA 1 cut(s) 705
BspACI CCGC 2 cut(s) 230, 383
BspANI GGCC 5 cut(s) 579, 638, 662, 994, 1020
BspCNI CTCAG 2 cut(s) 670, 981
BspFNI CGCG 2 cut(s) 383, 705
BspLI GGNNCC 1 cut(s) 837
BspPI GGATC 2 cut(s) 506, 841
BspT107I GGYRCC 1 cut(s) 835
BsrDI GCAATG 1 cut(s) 972
BsrGI TGTACA 2 cut(s) 57, 828
BsrI ACTGG 3 cut(s) 187, 192, 922
BssECI CCNNGG 3 cut(s) 580, 639, 689
BssMI GATC 7 cut(s) 154, 247, 265, 511, 651, 846, 943
BssNAI GTATAC 1 cut(s) 883
BssNI GRCGYC 1 cut(s) 836
BssT1I CCWWGG 1 cut(s) 689
Bst1107I GTATAC 1 cut(s) 883
Bst2UI CCWGG 2 cut(s) 582, 640
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 312, 621
BstACI GRCGYC 1 cut(s) 836
BstAUI TGTACA 2 cut(s) 57, 828
BstBAI YACGTR 3 cut(s) 484, 748, 1101
BstC8I GCNNGC 2 cut(s) 505, 857
BstDEI CTNAG 2 cut(s) 657, 989
BstEII GGTNACC 1 cut(s) 535
BstF5I GGATG 5 cut(s) 57, 290, 609, 739, 1082
BstFNI CGCG 2 cut(s) 383, 705
BstH2I RGCGCY 1 cut(s) 839
BstHHI GCGC 1 cut(s) 838
BstKTI GATC 7 cut(s) 157, 250, 268, 514, 654, 849, 946
BstMAI GTCTC 2 cut(s) 436, 932
BstMBI GATC 7 cut(s) 154, 247, 265, 511, 651, 846, 943
BstMWI GCNNNNNNNGC 1 cut(s) 1039
BstNI CCWGG 2 cut(s) 582, 640
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 580, 638
BstSFI CTRYAG 1 cut(s) 1133
BstUI CGCG 2 cut(s) 383, 705
BstV1I GCAGC 2 cut(s) 481, 558
BstXI CCANNNNNNTGG 2 cut(s) 122, 646
BstZ17I GTATAC 1 cut(s) 883
BsuRI GGCC 5 cut(s) 579, 638, 662, 994, 1020
BtgZI GCGATG 1 cut(s) 686
BtsCI GGATG 5 cut(s) 57, 290, 609, 739, 1082
BtsIMutI CAGTG 2 cut(s) 165, 180
BtuMI TCGCGA 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 505, 857
CfoI GCGC 1 cut(s) 838
Cfr13I GGNCC 3 cut(s) 133, 578, 950
CseI GACGC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 58, 481, 829
CviAII CATG 7 cut(s) 158, 363, 368, 664, 832, 947, 1056
CviQI GTAC 3 cut(s) 58, 481, 829
DdeI CTNAG 2 cut(s) 657, 989
DinI GGCGCC 1 cut(s) 837
DpnI GATC 7 cut(s) 156, 249, 267, 513, 653, 848, 945
DpnII GATC 7 cut(s) 154, 247, 265, 511, 651, 846, 943
DriI GACNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 2 cut(s) 636, 1018
Eam1104I CTCTTC 2 cut(s) 312, 621
Eam1105I GACNNNNNGTC 1 cut(s) 377
EarI CTCTTC 2 cut(s) 312, 621
Ecl136II GAGCTC 2 cut(s) 451, 552
Eco130I CCWWGG 1 cut(s) 689
Eco24I GRGCYC 2 cut(s) 453, 554
Eco47I GGWCC 2 cut(s) 133, 950
Eco53kI GAGCTC 2 cut(s) 451, 552
Eco57I CTGAAG 1 cut(s) 1130
Eco72I CACGTG 1 cut(s) 1101
Eco91I GGTNACC 1 cut(s) 535
EcoICRI GAGCTC 2 cut(s) 451, 552
EcoO65I GGTNACC 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 580, 638
EcoT14I CCWWGG 1 cut(s) 689
EcoT22I ATGCAT 1 cut(s) 395
EcoT38I GRGCYC 2 cut(s) 453, 554
EgeI GGCGCC 1 cut(s) 837
EheI GGCGCC 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 689
FaeI CATG 7 cut(s) 161, 366, 371, 667, 835, 950, 1059
FaqI GGGAC 1 cut(s) 1073
FatI CATG 7 cut(s) 157, 362, 367, 663, 831, 946, 1055
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 823
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 2 cut(s) 103, 882
Fnu4HI GCNGC 2 cut(s) 470, 572
FokI GGATG 5 cut(s) 64, 297, 616, 746, 1069
FriOI GRGCYC 2 cut(s) 453, 554
Fsp4HI GCNGC 2 cut(s) 470, 572
FspBI CTAG 3 cut(s) 251, 690, 717
GlaI GCGC 1 cut(s) 837
GluI GCNGC 2 cut(s) 470, 572
GsuI CTGGAG 1 cut(s) 1103
HaeII RGCGCY 1 cut(s) 839
HaeIII GGCC 5 cut(s) 579, 638, 662, 994, 1020
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 838
Hin1I GRCGYC 1 cut(s) 836
Hin1II CATG 7 cut(s) 161, 366, 371, 667, 835, 950, 1059
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 413
HpaI GTTAAC 1 cut(s) 172
HphI GGTGA 3 cut(s) 397, 547, 856
Hpy166II GTNNAC 5 cut(s) 104, 172, 829, 883, 986
Hpy188I TCNGA 3 cut(s) 51, 247, 1110
Hpy188III TCNNGA 9 cut(s) 251, 299, 446, 547, 704, 781, 892, 1004, 1120
Hpy8I GTNNAC 5 cut(s) 104, 172, 829, 883, 986
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 5 cut(s) 458, 483, 747, 879, 1100
HpyCH4V TGCA 7 cut(s) 220, 393, 574, 667, 758, 965, 1104
HpyF10VI GCNNNNNNNGC 1 cut(s) 1039
HpyF3I CTNAG 2 cut(s) 657, 989
HpySE526I ACGT 5 cut(s) 458, 483, 747, 879, 1100
Hsp92I GRCGYC 1 cut(s) 836
Hsp92II CATG 7 cut(s) 161, 366, 371, 667, 835, 950, 1059
HspAI GCGC 1 cut(s) 836
KasI GGCGCC 1 cut(s) 835
Ksp22I TGATCA 1 cut(s) 265
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 7 cut(s) 154, 247, 265, 511, 651, 846, 943
LmnI GCTCC 3 cut(s) 336, 1030, 1122
Lsp1109I GCAGC 2 cut(s) 481, 558
LweI GCATC 3 cut(s) 244, 727, 1057
MaeI CTAG 3 cut(s) 251, 690, 717
MaeII ACGT 5 cut(s) 458, 483, 747, 879, 1100
MaeIII GTNAC 4 cut(s) 535, 743, 767, 875
MalI GATC 7 cut(s) 156, 249, 267, 513, 653, 848, 945
MboI GATC 7 cut(s) 154, 247, 265, 511, 651, 846, 943
MboII GAAGA 5 cut(s) 329, 334, 638, 689, 1123
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 3 cut(s) 341, 453, 554
MlsI TGGCCA 2 cut(s) 638, 1020
MluCI AATT 7 cut(s) 25, 68, 200, 311, 404, 922, 1035
MluNI TGGCCA 2 cut(s) 638, 1020
Mly113I GGCGCC 1 cut(s) 836
Mox20I TGGCCA 2 cut(s) 638, 1020
Mph1103I ATGCAT 1 cut(s) 395
MscI TGGCCA 2 cut(s) 638, 1020
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 638, 1020
MspR9I CCNGG 2 cut(s) 582, 640
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 2 cut(s) 582, 640
MvnI CGCG 2 cut(s) 383, 705
MwoI GCNNNNNNNGC 1 cut(s) 1039
NarI GGCGCC 1 cut(s) 836
NdeI CATATG 1 cut(s) 823
NdeII GATC 7 cut(s) 154, 247, 265, 511, 651, 846, 943
NlaIII CATG 7 cut(s) 161, 366, 371, 667, 835, 950, 1059
NlaIV GGNNCC 1 cut(s) 837
NmuCI GTSAC 4 cut(s) 535, 743, 767, 875
NruI TCGCGA 1 cut(s) 705
NsiI ATGCAT 1 cut(s) 395
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 2 cut(s) 471, 573
PluTI GGCGCC 1 cut(s) 839
PmaCI CACGTG 1 cut(s) 1101
PmlI CACGTG 1 cut(s) 1101
Ppu21I YACGTR 3 cut(s) 484, 748, 1101
PsiI TTATAA 1 cut(s) 914
Psp124BI GAGCTC 2 cut(s) 453, 554
Psp6I CCWGG 2 cut(s) 580, 638
PspCI CACGTG 1 cut(s) 1101
PspEI GGTNACC 1 cut(s) 535
PspGI CCWGG 2 cut(s) 580, 638
PspN4I GGNNCC 1 cut(s) 837
PspPI GGNCC 3 cut(s) 133, 578, 950
RruI TCGCGA 1 cut(s) 705
RsaI GTAC 3 cut(s) 59, 482, 830
RsaNI GTAC 3 cut(s) 58, 481, 829
SacI GAGCTC 2 cut(s) 453, 554
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 470, 572
Sau3AI GATC 7 cut(s) 154, 247, 265, 511, 651, 846, 943
Sau96I GGNCC 3 cut(s) 133, 578, 950
ScrFI CCNGG 2 cut(s) 582, 640
SduI GDGCHC 3 cut(s) 341, 453, 554
SfaNI GCATC 3 cut(s) 244, 727, 1057
SfcI CTRYAG 1 cut(s) 1133
SfoI GGCGCC 1 cut(s) 837
SinI GGWCC 2 cut(s) 133, 950
SmlI CTYRAG 3 cut(s) 444, 547, 781
SmoI CTYRAG 3 cut(s) 444, 547, 781
Sse9I AATT 7 cut(s) 25, 68, 200, 311, 404, 922, 1035
SsiI CCGC 2 cut(s) 230, 383
SspDI GGCGCC 1 cut(s) 835
SspMI CTAG 3 cut(s) 251, 690, 717
SstI GAGCTC 2 cut(s) 453, 554
StyD4I CCNGG 2 cut(s) 580, 638
StyI CCWWGG 1 cut(s) 689
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 5 cut(s) 461, 486, 750, 882, 1103
TaqI TCGA 2 cut(s) 453, 554
TaqII GACCGA 1 cut(s) 554
TasI AATT 7 cut(s) 25, 68, 200, 311, 404, 922, 1035
TatI WGTACW 2 cut(s) 57, 828
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 172, 187
TseFI GTSAC 4 cut(s) 535, 743, 767, 875
TseI GCWGC 2 cut(s) 469, 571
Tsp45I GTSAC 4 cut(s) 535, 743, 767, 875
TspDTI ATGAA 5 cut(s) 17, 280, 479, 689, 1044
TspGWI ACGGA 1 cut(s) 1077
TspRI CASTG 2 cut(s) 172, 187
VpaK11BI GGWCC 2 cut(s) 133, 950
XapI RAATTY 3 cut(s) 25, 311, 404
XbaI TCTAGA 1 cut(s) 250
XmaJI CCTAGG 1 cut(s) 689
XmiI GTMKAC 2 cut(s) 103, 882
XspI CTAG 3 cut(s) 251, 690, 717
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.