Rmu_sc0007556.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007556.1
OG0014670
Physical Location & Seq
Forward (+)
4395 .. 5964
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007556.1_g000001.1.cds

Sequence Viewer

Length: 1149 bp
atgaaggtggaagaactggaaaagaaattagcaaaggagaaagagcttcggatgatgtacagaaagaaattggaaagaacacaagattatttgaggtattgtctacaagtagcccaagaaaatgggtttttggaccttgtactccataacaaagatcatgccgacactgttaacaatgccactggtaataccagtcctcaattgccaactactcctctgcaccagcaccagcaccacccaccttctgatctagatgctctcatcgatcaagccaagctaaatggatggttcataaatccagatgagattgaatttgaagagaagatagggcaggggagcacagcacagatatacaaagcaacatggcatggacttgatgtcgcggtgaaatgcatagaacctgaattctttgaatcaaacgagaatggtgtctcatttttcgctcaagagctcgatacgttatgtaggcagcgtcatcggtgcgtgcttcatctaatgggggcgtgccttgatcctcctaactatgcttgggtggtgaccgagttcttgagctcgacattgaaagagtggctgcacggccctggaaataggcaaaaagagaggatgattgagcttcctccattggaagagagggtggccagggcattggagatcgctcaggccatgcagtatctccacgaacaaaagcccaaggttcttcatcgcgacctaaagcctagcaacatctttttggatgatgctggtcacgtaagagttgcagattttggtcacgctcggttcttgagtgatgaggagatggcactaacaggggaaacaggtaagggagatggaacatatgtgtacatggcgccagaggtgatccaatgcgagccttacaatgagaaatgtgatgtatacagcttcgggattatactcaatgagattataactggaaattatccatatattgagacagattatggtcctactatgattgcaatggaagttgtggagggtaaactgaggccaagacttcccgatgacaacgatggccaacttggggagctaattgagctgatttgcctttcatgggacggagatgcttctattagaccatcctttgccaccatcacttgcaatctgaagaagctccagaacagaatactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

382

Amino Acids

43.67

Weight (kDa)

5.15

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014670)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31250
malus_domestica MD08G1069800.v1.1 MD15G1052200.v1.1
prunus_persica Prupe.1G406200_v2.0.a1 Prupe.1G406200_v2.0.a1
pyrus_communis pycom15g05000
rosa_chinensis RchiOBHm_Chr6g0311551
rosa_laevigata RLG00000010394
rosa_multiflora Rmu_co8269907.1_g000001 Rmu_sc0007556.1_g000001
rosa_roxburghii Rroxscaffold_7G00157500
rosa_rugosa Rorug06G0389700
rosa_samantha Rh6AG504600 Rh6BG515300 Rh6CG521200 Rh6DG507100
rosa_wichuraiana Rw6G043940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 926
AccB1I GGYRCC 1 cut(s) 847
AccI GTMKAC 2 cut(s) 103, 894
AccII CGCG 2 cut(s) 383, 705
AciI CCGC 1 cut(s) 383
AclWI GGATC 2 cut(s) 506, 853
AcoI YGGCCR 2 cut(s) 636, 1030
AcsI RAATTY 2 cut(s) 311, 404
AcuI CTGAAG 1 cut(s) 1142
AcyI GRCGYC 1 cut(s) 848
AfaI GTAC 3 cut(s) 59, 141, 842
AfiI CCNNNNNNNGG 2 cut(s) 1039, 1069
AgsI TTSAA 4 cut(s) 311, 317, 413, 562
AhdI GACNNNNNGTC 1 cut(s) 377
AjnI CCWGG 2 cut(s) 580, 638
AluBI AGCT 9 cut(s) 46, 277, 451, 552, 613, 900, 1045, 1054, 1129
AluI AGCT 9 cut(s) 46, 277, 451, 552, 613, 900, 1045, 1054, 1129
Alw21I GWGCWC 3 cut(s) 341, 453, 554
Alw26I GTCTC 2 cut(s) 436, 944
AlwI GGATC 2 cut(s) 506, 853
AoxI GGCC 5 cut(s) 577, 636, 660, 1004, 1030
ApeKI GCWGC 2 cut(s) 469, 571
ApoI RAATTY 2 cut(s) 311, 404
AspLEI GCGC 1 cut(s) 850
AspS9I GGNCC 3 cut(s) 133, 578, 962
AsuHPI GGTGA 3 cut(s) 397, 547, 868
AvaII GGWCC 2 cut(s) 133, 962
BalI TGGCCA 2 cut(s) 638, 1032
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 2 cut(s) 453, 554
Bbv12I GWGCWC 3 cut(s) 341, 453, 554
BbvI GCAGC 2 cut(s) 481, 558
BccI CCATC 6 cut(s) 279, 790, 821, 1022, 1102, 1115
BceAI ACGGC 1 cut(s) 592
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 582, 640
BcoDI GTCTC 2 cut(s) 436, 944
BfaI CTAG 2 cut(s) 251, 717
BfmI CTRYAG 1 cut(s) 1145
BfoI RGCGCY 1 cut(s) 851
BisI GCNGC 2 cut(s) 470, 572
BlsI GCNGC 2 cut(s) 471, 573
Bme1390I CCNGG 2 cut(s) 582, 640
Bme18I GGWCC 2 cut(s) 133, 962
BmeRI GACNNNNNGTC 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 133, 578, 962
BmiI GGNNCC 1 cut(s) 849
BmrFI CCNGG 2 cut(s) 582, 640
BmsI GCATC 3 cut(s) 244, 727, 1069
BpmI CTGGAG 1 cut(s) 1115
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 3 cut(s) 429, 568, 802
Bsa29I ATCGAT 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 748
BsaHI GRCGYC 1 cut(s) 848
BsaJI CCNNGG 3 cut(s) 580, 639, 690
Bsc4I CCNNNNNNNGG 2 cut(s) 1039, 1069
Bse1I ACTGG 4 cut(s) 21, 187, 192, 934
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 2 cut(s) 582, 640
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 580, 639, 690
BseGI GGATG 5 cut(s) 57, 290, 609, 739, 1094
BseLI CCNNNNNNNGG 2 cut(s) 1039, 1069
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 2 cut(s) 671, 992
BseNI ACTGG 4 cut(s) 21, 187, 192, 934
BseRI GAGGAG 2 cut(s) 204, 806
BseXI GCAGC 2 cut(s) 481, 558
BsgI GTGCAG 2 cut(s) 203, 557
Bsh1236I CGCG 2 cut(s) 383, 705
BshFI GGCC 5 cut(s) 579, 638, 662, 1006, 1032
BshNI GGYRCC 1 cut(s) 847
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 3 cut(s) 341, 453, 554
BslFI GGGAC 1 cut(s) 1085
BslI CCNNNNNNNGG 2 cut(s) 1039, 1069
BsmAI GTCTC 2 cut(s) 436, 944
BsmFI GGGAC 1 cut(s) 1085
BsnI GGCC 5 cut(s) 579, 638, 662, 1006, 1032
Bsp1286I GDGCHC 3 cut(s) 341, 453, 554
Bsp1407I TGTACA 2 cut(s) 57, 840
Bsp143I GATC 6 cut(s) 154, 247, 265, 511, 651, 858
Bsp68I TCGCGA 1 cut(s) 705
BspACI CCGC 1 cut(s) 383
BspANI GGCC 5 cut(s) 579, 638, 662, 1006, 1032
BspCNI CTCAG 2 cut(s) 670, 993
BspDI ATCGAT 1 cut(s) 264
BspFNI CGCG 2 cut(s) 383, 705
BspLI GGNNCC 1 cut(s) 849
BspPI GGATC 2 cut(s) 506, 853
BspT107I GGYRCC 1 cut(s) 847
BsrDI GCAATG 1 cut(s) 984
BsrGI TGTACA 2 cut(s) 57, 840
BsrI ACTGG 4 cut(s) 21, 187, 192, 934
BssECI CCNNGG 3 cut(s) 580, 639, 690
BssMI GATC 6 cut(s) 154, 247, 265, 511, 651, 858
BssNAI GTATAC 1 cut(s) 895
BssNI GRCGYC 1 cut(s) 848
BssT1I CCWWGG 1 cut(s) 690
Bst1107I GTATAC 1 cut(s) 895
Bst2UI CCWGG 2 cut(s) 582, 640
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 312, 621
BstACI GRCGYC 1 cut(s) 848
BstAUI TGTACA 2 cut(s) 57, 840
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 3 cut(s) 485, 505, 869
BstDEI CTNAG 2 cut(s) 657, 1001
BstEII GGTNACC 1 cut(s) 535
BstF5I GGATG 5 cut(s) 57, 290, 609, 739, 1094
BstFNI CGCG 2 cut(s) 383, 705
BstH2I RGCGCY 1 cut(s) 851
BstHHI GCGC 1 cut(s) 850
BstKTI GATC 6 cut(s) 157, 250, 268, 514, 654, 861
BstMAI GTCTC 2 cut(s) 436, 944
BstMBI GATC 6 cut(s) 154, 247, 265, 511, 651, 858
BstMWI GCNNNNNNNGC 1 cut(s) 1051
BstNI CCWGG 2 cut(s) 582, 640
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 580, 638
BstSFI CTRYAG 1 cut(s) 1145
BstUI CGCG 2 cut(s) 383, 705
BstV1I GCAGC 2 cut(s) 481, 558
BstXI CCANNNNNNTGG 2 cut(s) 122, 646
BstZ17I GTATAC 1 cut(s) 895
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 5 cut(s) 579, 638, 662, 1006, 1032
BsuTUI ATCGAT 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 686
BtsCI GGATG 5 cut(s) 57, 290, 609, 739, 1094
BtsIMutI CAGTG 2 cut(s) 165, 180
BtuMI TCGCGA 1 cut(s) 705
Cac8I GCNNGC 3 cut(s) 485, 505, 869
CfoI GCGC 1 cut(s) 850
Cfr13I GGNCC 3 cut(s) 133, 578, 962
ClaI ATCGAT 1 cut(s) 264
CseI GACGC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 58, 140, 841
CviAII CATG 6 cut(s) 158, 363, 368, 664, 844, 1068
CviQI GTAC 3 cut(s) 58, 140, 841
DdeI CTNAG 2 cut(s) 657, 1001
DinI GGCGCC 1 cut(s) 849
DpnI GATC 6 cut(s) 156, 249, 267, 513, 653, 860
DpnII GATC 6 cut(s) 154, 247, 265, 511, 651, 858
DriI GACNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 2 cut(s) 636, 1030
Eam1104I CTCTTC 2 cut(s) 312, 621
Eam1105I GACNNNNNGTC 1 cut(s) 377
EarI CTCTTC 2 cut(s) 312, 621
Ecl136II GAGCTC 2 cut(s) 451, 552
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 2 cut(s) 453, 554
Eco47I GGWCC 2 cut(s) 133, 962
Eco53kI GAGCTC 2 cut(s) 451, 552
Eco57I CTGAAG 1 cut(s) 1142
Eco91I GGTNACC 1 cut(s) 535
EcoICRI GAGCTC 2 cut(s) 451, 552
EcoO65I GGTNACC 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 580, 638
EcoT14I CCWWGG 1 cut(s) 690
EcoT22I ATGCAT 1 cut(s) 395
EcoT38I GRGCYC 2 cut(s) 453, 554
EgeI GGCGCC 1 cut(s) 849
EheI GGCGCC 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 6 cut(s) 161, 366, 371, 667, 847, 1071
FaqI GGGAC 1 cut(s) 1085
FatI CATG 6 cut(s) 157, 362, 367, 663, 843, 1067
FauNDI CATATG 1 cut(s) 835
FblI GTMKAC 2 cut(s) 103, 894
Fnu4HI GCNGC 2 cut(s) 470, 572
FokI GGATG 5 cut(s) 64, 297, 616, 746, 1081
FriOI GRGCYC 2 cut(s) 453, 554
Fsp4HI GCNGC 2 cut(s) 470, 572
FspBI CTAG 2 cut(s) 251, 717
GlaI GCGC 1 cut(s) 849
GluI GCNGC 2 cut(s) 470, 572
GsuI CTGGAG 1 cut(s) 1115
HaeII RGCGCY 1 cut(s) 851
HaeIII GGCC 5 cut(s) 579, 638, 662, 1006, 1032
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 850
Hin1I GRCGYC 1 cut(s) 848
Hin1II CATG 6 cut(s) 161, 366, 371, 667, 847, 1071
Hin6I GCGC 1 cut(s) 848
HinP1I GCGC 1 cut(s) 848
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 413
HpaI GTTAAC 1 cut(s) 172
HphI GGTGA 3 cut(s) 397, 547, 868
Hpy166II GTNNAC 5 cut(s) 104, 172, 841, 895, 998
Hpy188I TCNGA 3 cut(s) 51, 247, 1122
Hpy188III TCNNGA 9 cut(s) 251, 299, 446, 547, 704, 781, 904, 1016, 1132
Hpy8I GTNNAC 5 cut(s) 104, 172, 841, 895, 998
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 458, 747
HpyCH4V TGCA 7 cut(s) 220, 393, 574, 667, 758, 977, 1116
HpyF10VI GCNNNNNNNGC 1 cut(s) 1051
HpyF3I CTNAG 2 cut(s) 657, 1001
HpySE526I ACGT 2 cut(s) 458, 747
Hsp92I GRCGYC 1 cut(s) 848
Hsp92II CATG 6 cut(s) 161, 366, 371, 667, 847, 1071
HspAI GCGC 1 cut(s) 848
KasI GGCGCC 1 cut(s) 847
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 6 cut(s) 154, 247, 265, 511, 651, 858
LmnI GCTCC 3 cut(s) 336, 1042, 1134
Lsp1109I GCAGC 2 cut(s) 481, 558
LweI GCATC 3 cut(s) 244, 727, 1069
MaeI CTAG 2 cut(s) 251, 717
MaeII ACGT 2 cut(s) 458, 747
MaeIII GTNAC 3 cut(s) 535, 743, 767
MalI GATC 6 cut(s) 156, 249, 267, 513, 653, 860
MboI GATC 6 cut(s) 154, 247, 265, 511, 651, 858
MboII GAAGA 6 cut(s) 23, 329, 334, 638, 689, 1135
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 3 cut(s) 341, 453, 554
MlsI TGGCCA 2 cut(s) 638, 1032
MluCI AATT 7 cut(s) 26, 68, 200, 311, 404, 934, 1047
MluNI TGGCCA 2 cut(s) 638, 1032
Mly113I GGCGCC 1 cut(s) 848
Mox20I TGGCCA 2 cut(s) 638, 1032
Mph1103I ATGCAT 1 cut(s) 395
MscI TGGCCA 2 cut(s) 638, 1032
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 638, 1032
MspR9I CCNGG 2 cut(s) 582, 640
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 2 cut(s) 582, 640
MvnI CGCG 2 cut(s) 383, 705
MwoI GCNNNNNNNGC 1 cut(s) 1051
NarI GGCGCC 1 cut(s) 848
NdeI CATATG 1 cut(s) 835
NdeII GATC 6 cut(s) 154, 247, 265, 511, 651, 858
NlaIII CATG 6 cut(s) 161, 366, 371, 667, 847, 1071
NlaIV GGNNCC 1 cut(s) 849
NmuCI GTSAC 3 cut(s) 535, 743, 767
NruI TCGCGA 1 cut(s) 705
NsiI ATGCAT 1 cut(s) 395
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 2 cut(s) 471, 573
PluTI GGCGCC 1 cut(s) 851
Ppu21I YACGTR 1 cut(s) 748
PsiI TTATAA 1 cut(s) 926
Psp124BI GAGCTC 2 cut(s) 453, 554
Psp6I CCWGG 2 cut(s) 580, 638
PspEI GGTNACC 1 cut(s) 535
PspGI CCWGG 2 cut(s) 580, 638
PspN4I GGNNCC 1 cut(s) 849
PspPI GGNCC 3 cut(s) 133, 578, 962
RruI TCGCGA 1 cut(s) 705
RsaI GTAC 3 cut(s) 59, 141, 842
RsaNI GTAC 3 cut(s) 58, 140, 841
SacI GAGCTC 2 cut(s) 453, 554
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 470, 572
Sau3AI GATC 6 cut(s) 154, 247, 265, 511, 651, 858
Sau96I GGNCC 3 cut(s) 133, 578, 962
ScrFI CCNGG 2 cut(s) 582, 640
SduI GDGCHC 3 cut(s) 341, 453, 554
SfaNI GCATC 3 cut(s) 244, 727, 1069
SfcI CTRYAG 1 cut(s) 1145
SfoI GGCGCC 1 cut(s) 849
SinI GGWCC 2 cut(s) 133, 962
SmlI CTYRAG 3 cut(s) 444, 547, 781
SmoI CTYRAG 3 cut(s) 444, 547, 781
Sse9I AATT 7 cut(s) 26, 68, 200, 311, 404, 934, 1047
SsiI CCGC 1 cut(s) 383
SspDI GGCGCC 1 cut(s) 847
SspMI CTAG 2 cut(s) 251, 717
SstI GAGCTC 2 cut(s) 453, 554
StyD4I CCNGG 2 cut(s) 580, 638
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 461, 750
TaqI TCGA 3 cut(s) 264, 453, 554
TaqII GACCGA 1 cut(s) 554
TasI AATT 7 cut(s) 26, 68, 200, 311, 404, 934, 1047
TatI WGTACW 3 cut(s) 57, 139, 840
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 172, 187
TseFI GTSAC 3 cut(s) 535, 743, 767
TseI GCWGC 2 cut(s) 469, 571
Tsp45I GTSAC 3 cut(s) 535, 743, 767
TspDTI ATGAA 5 cut(s) 17, 280, 479, 689, 1056
TspGWI ACGGA 1 cut(s) 1089
TspRI CASTG 2 cut(s) 172, 187
VpaK11BI GGWCC 2 cut(s) 133, 962
XapI RAATTY 2 cut(s) 311, 404
XbaI TCTAGA 1 cut(s) 250
XmiI GTMKAC 2 cut(s) 103, 894
XspI CTAG 2 cut(s) 251, 717
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.