MD08G1074500.v1.1

Clathrin interactor EPSIN

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
6018676 .. 6023654
4979 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1074500.v1.1.491

Sequence Viewer

Length: 1716 bp
ATGTCAAGGGAGGTGAATCTGAAGGTCTTGAAGGTTCCGGAGATGGAGCAGAAGGTATTGGATGCGACAGATAGTGAACCTTGGGGTCCTCATGGCTCTGCATTGGCAGAGATTGCACAGGCCACTAAAAAATTTTCGGAATGTCAGATGGTTATGAGTGTTTTATGGACAAGACTAAGTGAGACGGGAAAAGACTGGCGTCATGTTTATAAGGCATTGGCTGTTATAGAATATTTGGTTTCACATGGATCTGAGCGTGCTGTTGATGACATTATAGAACATACTTTCCAAATCTCATCACTCTCAAGCTTTGAATATGTTGAGCCAAGTGGGAAAGATAATGGAATAAATGTGAGAAAGAAGGCTGAAAATATAGTGGCCCTTCTGAATAATAAAGATAAAATACAAGAAGTTAGAAACAAAGCTGCTGCAAATCGTGACAAGTACTTTGGACTTTCATCTACTGGGATAACATATAAGTCAGGTTCAGCGACTTCATCCTCGTATAGTAATAGCAGCTTTCAGAGTAGTGACCGCTATGGAGGTCTAGGTGGTACAGCAGCTGCTGGTGATAGTTTCGGCGATAGCTATAGAGACAGACATGAAGAAGACAAGACTGAGAAGTTCAGCTCAAGCAGGTCTCGACGTGGGGCTACAAGTGAGAATCGAGAGAGCTCTTCAAAGAAGGGCTCAACACGAAGCAGGAGAGGGCAGGATGATATATCATCTAGTGAGTCAAAGTCATCAAATAAATCAAATGAAGCTGATACATACAGTTCAATTCACACGCAAAGCCCAAGTATTGCTGATGATGATGACGATTTTGATCCGCGAGGGACTTCTACTACTAAGGCTGCTGTTGCAAGCTCGAACCAAGTGGATCTATTTGGACAAAATTTGATGGACGACTTCGTAGATGTTCCAGCATCTGTTCCTGAAGAAAAGCCTGTTATGAACAGCAGTTCATCGGACGTTGATCTGTTTGCAGATGCAGATTTTGTGTCAGCAGCACCACCCCAGGCAGCATCTGGAGCATTTGCAGACTCAACTTTTGTATCCGCACCACCCAAGACAGCAACTGGAGCAAGTTCTCAAACTCAGAATGGCTTTGATCTGTTTGCGTCTCAACCAACCCTATCCCCACCGGCTTCTTCAACAGTTGATCTTTTTGCCACCCCTGATCCAGTTATGCAGCCAGAAGCCAAGTCTACAAATGCTGCACCAACAAACACCAACATTGTTGATCCCTTTGCCACTGTTCCACTTAACAATTTTGATGGATCTGATATAATGGGGGCGTTCACGTCTCATTCTGATTCAGCAGCTTCAGAACCTTCCCAAAGTTCTGTCAATGATGGCAGCCACAATGTTGTGGGGAAACAATCTTTAGCAGATTCGAAGACCCCACCCAAGAAGGATTTCCAGGTGAAATCTGGCATTTGGGCCGATTCACTTAGCCGTGGACTGATTGATCTTAATATATCTGGTCCCAAGAAGGTGAATCTGGCGGATGTGGGAATCGTGGGTGGATTGACTGATGGAACCGATGAAAGAGAGAAAGGGCCCCCAACTTCGTATTACATGGGAAGAGCAATGGGTTCGGGGACTGGTCTTGGAAAATCAGGGTTCCCATCTTCACAAGGAATAGGTGACGACTTCTTCTCAAGTCTCAGCAGCGGCAACCAGCAATACCAATACGGTGGATTCCAAAAGTAA

Protein Analysis

572

Amino Acids

60.74

Weight (kDa)

4.96

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 14 - 134 1.3e-43 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 627
AccI GTMKAC 1 cut(s) 1208
AccII CGCG 1 cut(s) 832
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 5 cut(s) 535, 830, 1059, 1508, 1677
AclWI GGATC 6 cut(s) 256, 821, 888, 1175, 1238, 1288
AcsI RAATTY 2 cut(s) 131, 895
AcuI CTGAAG 3 cut(s) 41, 957, 1311
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 2 cut(s) 446, 556
AgsI TTSAA 5 cut(s) 31, 314, 681, 780, 1155
AjiI CACGTC 2 cut(s) 647, 1305
AjnI CCWGG 2 cut(s) 1017, 1422
AjuI GAANNNNNNNTTGG 2 cut(s) 1403, 1435
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 6 cut(s) 176, 588, 645, 1128, 1311, 1673
AlwI GGATC 6 cut(s) 256, 821, 888, 1175, 1238, 1288
AlwNI CAGNNNCTG 5 cut(s) 563, 566, 929, 1028, 1079
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 4 cut(s) 120, 378, 1443, 1562
ApaI GGGCCC 1 cut(s) 1566
ApoI RAATTY 2 cut(s) 131, 895
ArsI GACNNNNNNTTYG 4 cut(s) 431, 463, 1034, 1066
Asp700I GAANNNNTTC 1 cut(s) 1418
AspS9I GGNCC 6 cut(s) 86, 379, 1443, 1487, 1562, 1563
AsuHPI GGTGA 5 cut(s) 25, 581, 1438, 1510, 1661
AsuII TTCGAA 1 cut(s) 1397
AvaII GGWCC 2 cut(s) 86, 1487
BaeGI GKGCMC 1 cut(s) 1566
BaeI ACNNNNGTAYC 2 cut(s) 1038, 1071
BanII GRGCYC 3 cut(s) 677, 692, 1566
BbsI GAAGAC 2 cut(s) 615, 1406
Bbv12I GWGCWC 1 cut(s) 677
BccI CCATC 7 cut(s) 37, 142, 895, 1271, 1349, 1532, 1639
BceAI ACGGC 1 cut(s) 1443
BcgI CGANNNNNNTGC 2 cut(s) 1581, 1615
BciT130I CCWGG 2 cut(s) 1019, 1424
BciVI GTATCC 1 cut(s) 1066
BcoDI GTCTC 6 cut(s) 176, 588, 645, 1128, 1311, 1673
BfaI CTAG 2 cut(s) 548, 729
BfmI CTRYAG 1 cut(s) 589
BfuAI ACCTGC 1 cut(s) 627
BfuI GTATCC 1 cut(s) 1066
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 1019, 1424
Bme18I GGWCC 2 cut(s) 86, 1487
BmgBI CACGTC 2 cut(s) 647, 1305
BmgT120I GGNCC 6 cut(s) 86, 379, 1443, 1487, 1562, 1563
BmiI GGNNCC 7 cut(s) 36, 87, 1489, 1543, 1564, 1565, 1628
BmrFI CCNGG 2 cut(s) 1019, 1424
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 4 cut(s) 52, 935, 979, 1034
BmuI ACTGGG 1 cut(s) 474
BoxI GACNNNNGTC 1 cut(s) 198
BpiI GAAGAC 2 cut(s) 615, 1406
BpmI CTGGAG 2 cut(s) 1050, 1101
Bpu14I TTCGAA 1 cut(s) 1397
BpuEI CTTGAG 3 cut(s) 289, 616, 1648
BsaBI GATNNNNATC 1 cut(s) 825
BsaHI GRCGYC 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 645
BsaJI CCNNGG 3 cut(s) 80, 1017, 1459
BsaWI WCCGGW 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 1144
Bse1I ACTGG 5 cut(s) 200, 469, 1084, 1184, 1612
Bse3DI GCAATG 1 cut(s) 1599
Bse8I GATNNNNATC 1 cut(s) 825
BseAI TCCGGA 1 cut(s) 37
BseBI CCWGG 2 cut(s) 1019, 1424
BseDI CCNNGG 3 cut(s) 80, 1017, 1459
BseGI GGATG 4 cut(s) 67, 497, 721, 1516
BseJI GATNNNNATC 1 cut(s) 825
BseMI GCAATG 1 cut(s) 1599
BseMII CTCAG 4 cut(s) 243, 609, 1112, 1684
BseNI ACTGG 5 cut(s) 200, 469, 1084, 1184, 1612
BseSI GKGCMC 1 cut(s) 1566
BsgI GTGCAG 1 cut(s) 1203
Bsh1236I CGCG 1 cut(s) 832
BshFI GGCC 4 cut(s) 122, 380, 1445, 1564
BsiHKAI GWGCWC 1 cut(s) 677
BsiSI CCGG 2 cut(s) 38, 1145
BslFI GGGAC 3 cut(s) 850, 1473, 1618
BsmAI GTCTC 6 cut(s) 176, 588, 645, 1128, 1311, 1673
BsmBI CGTCTC 3 cut(s) 176, 1128, 1311
BsmFI GGGAC 3 cut(s) 850, 1473, 1618
BsnI GGCC 4 cut(s) 122, 380, 1445, 1564
Bso31I GGTCTC 1 cut(s) 645
Bsp119I TTCGAA 1 cut(s) 1397
Bsp120I GGGCCC 1 cut(s) 1562
Bsp1286I GDGCHC 3 cut(s) 677, 692, 1566
Bsp13I TCCGGA 1 cut(s) 37
BspACI CCGC 5 cut(s) 535, 830, 1059, 1508, 1677
BspANI GGCC 4 cut(s) 122, 380, 1445, 1564
BspCNI CTCAG 4 cut(s) 244, 610, 1111, 1683
BspEI TCCGGA 1 cut(s) 37
BspFNI CGCG 1 cut(s) 832
BspLI GGNNCC 7 cut(s) 36, 87, 1489, 1543, 1564, 1565, 1628
BspMI ACCTGC 1 cut(s) 627
BspPI GGATC 6 cut(s) 256, 821, 888, 1175, 1238, 1288
BspQI GCTCTTC 2 cut(s) 682, 1582
BspT104I TTCGAA 1 cut(s) 1397
BspTNI GGTCTC 1 cut(s) 645
BsrDI GCAATG 1 cut(s) 1599
BsrFI RCCGGY 1 cut(s) 1144
BsrI ACTGG 5 cut(s) 200, 469, 1084, 1184, 1612
BssAI RCCGGY 1 cut(s) 1144
BssECI CCNNGG 3 cut(s) 80, 1017, 1459
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 1019, 1424
Bst4CI ACNGT 4 cut(s) 776, 1159, 1258, 1700
Bst6I CTCTTC 2 cut(s) 682, 1582
BstACI GRCGYC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 1397
BstC8I GCNNGC 2 cut(s) 258, 865
BstDEI CTNAG 7 cut(s) 176, 252, 618, 849, 1098, 1454, 1670
BstDSI CCRYGG 1 cut(s) 1459
BstF5I GGATG 4 cut(s) 67, 497, 721, 1516
BstFNI CGCG 1 cut(s) 832
BstMAI GTCTC 6 cut(s) 176, 588, 645, 1128, 1311, 1673
BstMWI GCNNNNNNNGC 4 cut(s) 113, 860, 1031, 1082
BstNI CCWGG 2 cut(s) 1019, 1424
BstPAI GACNNNNGTC 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 1017, 1422
BstSFI CTRYAG 1 cut(s) 589
BstSLI GKGCMC 1 cut(s) 1566
BstUI CGCG 1 cut(s) 832
BstV2I GAAGAC 2 cut(s) 615, 1406
BstX2I RGATCY 3 cut(s) 248, 880, 1280
BstXI CCANNNNNNTGG 1 cut(s) 1700
BstYI RGATCY 3 cut(s) 248, 880, 1280
BsuI GTATCC 1 cut(s) 1066
BsuRI GGCC 4 cut(s) 122, 380, 1445, 1564
BtgI CCRYGG 1 cut(s) 1459
BtrI CACGTC 2 cut(s) 647, 1305
BtsCI GGATG 4 cut(s) 67, 497, 721, 1516
BtsIMutI CAGTG 1 cut(s) 1254
BveI ACCTGC 1 cut(s) 627
Cac8I GCNNGC 2 cut(s) 258, 865
CaiI CAGNNNCTG 5 cut(s) 563, 566, 929, 1028, 1079
Cfr10I RCCGGY 1 cut(s) 1144
Cfr13I GGNCC 6 cut(s) 86, 379, 1443, 1487, 1562, 1563
CseI GACGC 2 cut(s) 188, 1110
Csp6I GTAC 2 cut(s) 445, 555
CviAII CATG 5 cut(s) 92, 203, 245, 602, 1582
CviQI GTAC 2 cut(s) 445, 555
DdeI CTNAG 7 cut(s) 176, 252, 618, 849, 1098, 1454, 1670
Eam1104I CTCTTC 2 cut(s) 682, 1582
EarI CTCTTC 2 cut(s) 682, 1582
EciI GGCGGA 1 cut(s) 1523
Ecl136II GAGCTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 3 cut(s) 677, 692, 1566
Eco31I GGTCTC 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 86, 1487
Eco53kI GAGCTC 1 cut(s) 675
Eco57I CTGAAG 3 cut(s) 41, 957, 1311
EcoICRI GAGCTC 1 cut(s) 675
EcoO109I RGGNCCY 3 cut(s) 86, 1562, 1563
EcoRII CCWGG 2 cut(s) 1017, 1422
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 3 cut(s) 677, 692, 1566
ErhI CCWWGG 1 cut(s) 80
Esp3I CGTCTC 3 cut(s) 176, 1128, 1311
FaeI CATG 5 cut(s) 95, 206, 248, 605, 1585
FaqI GGGAC 3 cut(s) 850, 1473, 1618
FatI CATG 5 cut(s) 91, 202, 244, 601, 1581
FblI GTMKAC 1 cut(s) 1208
FokI GGATG 4 cut(s) 74, 484, 728, 1523
FriOI GRGCYC 3 cut(s) 677, 692, 1566
FspBI CTAG 2 cut(s) 548, 729
GsuI CTGGAG 2 cut(s) 1050, 1101
HaeIII GGCC 4 cut(s) 122, 380, 1445, 1564
HapII CCGG 2 cut(s) 38, 1145
HgaI GACGC 2 cut(s) 188, 1110
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 5 cut(s) 95, 206, 248, 605, 1585
HindIII AAGCTT 1 cut(s) 307
HpaII CCGG 2 cut(s) 38, 1145
HphI GGTGA 5 cut(s) 25, 581, 1438, 1510, 1661
Hpy166II GTNNAC 4 cut(s) 77, 1209, 1302, 1463
Hpy188III TCNNGA 7 cut(s) 28, 38, 437, 642, 668, 935, 1029
Hpy8I GTNNAC 4 cut(s) 77, 1209, 1302, 1463
Hpy99I CGWCG 1 cut(s) 648
HpyAV CCTTC 9 cut(s) 16, 25, 46, 355, 392, 679, 1344, 1408, 1489
HpyCH4III ACNGT 4 cut(s) 776, 1159, 1258, 1700
HpyCH4IV ACGT 3 cut(s) 646, 972, 1304
HpyCH4V TGCA 9 cut(s) 101, 116, 431, 863, 986, 992, 1040, 1192, 1220
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 860, 1031, 1082
HpyF3I CTNAG 7 cut(s) 176, 252, 618, 849, 1098, 1454, 1670
HpySE526I ACGT 3 cut(s) 646, 972, 1304
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 5 cut(s) 95, 206, 248, 605, 1585
Kpn2I TCCGGA 1 cut(s) 37
LguI GCTCTTC 2 cut(s) 682, 1582
LmnI GCTCC 3 cut(s) 46, 1031, 1082
LweI GCATC 4 cut(s) 52, 935, 979, 1034
MaeI CTAG 2 cut(s) 548, 729
MaeII ACGT 3 cut(s) 646, 972, 1304
MaeIII GTNAC 3 cut(s) 437, 530, 1649
MboII GAAGA 9 cut(s) 617, 620, 669, 950, 1143, 1411, 1599, 1626, 1651
MflI RGATCY 3 cut(s) 248, 880, 1280
MhlI GDGCHC 3 cut(s) 677, 692, 1566
MluCI AATT 4 cut(s) 131, 780, 895, 1270
MlyI GAGTC 2 cut(s) 743, 1037
MnlI CCTC 6 cut(s) 4, 99, 511, 536, 701, 827
MroI TCCGGA 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 1418
MseI TTAA 2 cut(s) 1266, 1476
MspA1I CMGCKG 2 cut(s) 563, 1677
MspI CCGG 2 cut(s) 38, 1145
MspR9I CCNGG 2 cut(s) 1019, 1424
MvaI CCWGG 2 cut(s) 1019, 1424
MvnI CGCG 1 cut(s) 832
MwoI GCNNNNNNNGC 4 cut(s) 113, 860, 1031, 1082
NlaIII CATG 5 cut(s) 95, 206, 248, 605, 1585
NlaIV GGNNCC 7 cut(s) 36, 87, 1489, 1543, 1564, 1565, 1628
NmuCI GTSAC 3 cut(s) 437, 530, 1649
NspV TTCGAA 1 cut(s) 1397
PciSI GCTCTTC 2 cut(s) 682, 1582
PdmI GAANNNNTTC 1 cut(s) 1418
PfeI GAWTC 8 cut(s) 16, 664, 1316, 1394, 1448, 1501, 1518, 1704
PleI GAGTC 2 cut(s) 742, 1037
PpsI GAGTC 2 cut(s) 742, 1037
PpuMI RGGWCCY 1 cut(s) 86
PshAI GACNNNNGTC 1 cut(s) 198
PsiI TTATAA 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 1017, 1422
PspGI CCWGG 2 cut(s) 1017, 1422
PspN4I GGNNCC 7 cut(s) 36, 87, 1489, 1543, 1564, 1565, 1628
PspOMI GGGCCC 1 cut(s) 1562
PspPI GGNCC 6 cut(s) 86, 379, 1443, 1487, 1562, 1563
PspPPI RGGWCCY 1 cut(s) 86
PstNI CAGNNNCTG 5 cut(s) 563, 566, 929, 1028, 1079
PsuI RGATCY 3 cut(s) 248, 880, 1280
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 446, 556
RsaNI GTAC 2 cut(s) 445, 555
SacI GAGCTC 1 cut(s) 677
SapI GCTCTTC 2 cut(s) 682, 1582
SaqAI TTAA 2 cut(s) 1266, 1476
Sau96I GGNCC 6 cut(s) 86, 379, 1443, 1487, 1562, 1563
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 2 cut(s) 743, 1037
ScrFI CCNGG 2 cut(s) 1019, 1424
SduI GDGCHC 3 cut(s) 677, 692, 1566
SfaNI GCATC 4 cut(s) 52, 935, 979, 1034
SfcI CTRYAG 1 cut(s) 589
SfuI TTCGAA 1 cut(s) 1397
SinI GGWCC 2 cut(s) 86, 1487
SmlI CTYRAG 3 cut(s) 304, 631, 1663
SmoI CTYRAG 3 cut(s) 304, 631, 1663
Sse9I AATT 4 cut(s) 131, 780, 895, 1270
SsiI CCGC 5 cut(s) 535, 830, 1059, 1508, 1677
SspI AATATT 1 cut(s) 233
SspMI CTAG 2 cut(s) 548, 729
SstI GAGCTC 1 cut(s) 677
StyD4I CCNGG 2 cut(s) 1017, 1422
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 4 cut(s) 776, 1159, 1258, 1700
TaiI ACGT 3 cut(s) 649, 975, 1307
TaqI TCGA 4 cut(s) 643, 667, 869, 1397
TasI AATT 4 cut(s) 131, 780, 895, 1270
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 1680
TfiI GAWTC 8 cut(s) 16, 664, 1316, 1394, 1448, 1501, 1518, 1704
Tru1I TTAA 2 cut(s) 1266, 1476
Tru9I TTAA 2 cut(s) 1266, 1476
TscAI CASTG 1 cut(s) 1261
TseFI GTSAC 3 cut(s) 437, 530, 1649
Tsp45I GTSAC 3 cut(s) 437, 530, 1649
TspDTI ATGAA 7 cut(s) 447, 486, 618, 774, 954, 968, 1563
TspRI CASTG 1 cut(s) 1261
VpaK11BI GGWCC 2 cut(s) 86, 1487
XapI RAATTY 2 cut(s) 131, 895
XcmI CCANNNNNNNNNTGG 2 cut(s) 1025, 1430
XmiI GTMKAC 1 cut(s) 1208
XmnI GAANNNNTTC 1 cut(s) 1418
XspI CTAG 2 cut(s) 548, 729
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.