Rw6G042950

Clathrin interactor EPSIN

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
66382515 .. 66387088
4574 bp
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UTR
Exon/CDS
Intron
Rw6G042950.1

Sequence Viewer

Length: 1758 bp
ATGGATTTCATGAAGGTGTTCGATCAAACGGTCCGGGAAATAAAGAGGGAGGTGAATCTGAAGGTGTTGAAGGTACCGGAGATGGAACAGAAGGTATTGGATGCAACGGATAATGAACCTTGGGGTCCTCATGGCTCTGCATTGGCAGAGATCGCACAGGCCACTAAGAAATTTTCGGAATGTCAGATGGTTATGAGTGTTTTATGGACAAGATTGAGTGAGACAGGCAAGGACTGGCGTCTTGTCTATAAGTCATTGGCTGTCATAGAGTATCTGGTGTCACATGGATCGGAACGTGCTGTTGATGATATTATAGAACATACTTTCCAAATCTCATCACTCTCAAGTTTTGAATATGTTGAGCCAAGTGGGAAGGATATGGGTATAAATGTGAGGAAGAAGGCTGAAACCATTGTGGGCCTTTTGAATAATAAAGATAAAATACAAGAAGTTAGAAATAAAGCTGCTGCAAACCAGGACAAGTACTTTGGACTTTCATCTACTGGGATAACATACAAGTCAGGTTCAGCAACTTCGTCCTCTTATAGTAGTGGCAGCTATCAAAGTAGCGATCGCTATGGAGGTTCAAGTGGTGTAGGATCTGGCGATAGGTTCAAGGATAACTATAAGGACAGAGACCAATATGATGAAGACAAGTTTGAGAAGAAAACCTCTAGTAGGTCACGCCGTGGCAGCAGAAAGGATCAGGATAATGTTTCATCCAGTGTTAAAAAGTCATCATATAAGACAAATGACTCTGATAAGTACAGTTCAAATCCCAGTCAGACTGCTAGTGTACTTTCGGATGATTATGAGGATGATTTTGATCCACGAGGGACTTCTACTACTAAGGCTGCTGCTGGAAGCTCAAACCAAGTGGATCTGTTTGGACAAAGTTTGATTGGTGATCTCATGGATGCTCCAGCATCTGTTCCCGAAGAGAAGCCTGGCATGAATAGTGGTTCATCAGAGGTTGATCTGTTTGCAGATGCAGCTTTTGTATCAGCACCACCACAGGCAGAAACGGAAGCATTTGCAGATGCAACTTTTGTATCAGCACCTCCCCAGGCAGACACTGAAGCATTTGCAGATGCAACTTTTGTATCAGCACCACCCCAGAAAGCAACTGGAGCAAGTTCTCAAACTCAGAATGCTGTTGATCTATTTGCTTCCCAACCAACCATTTCTCAGTCGGCTTCTTCACCGGTTGACCTCTTTGCGGCCCCTGTTCCAGTTATGCAGCCAGAAACCAAGTCCACAAGTCCTGCACCGACAAACACCAACATTGTTGATCCCTTTGCTGCCGTTCCACTTAACAGTTTTGATGGATCTGATTTCTTGGGGGGATTCACCTCTCACTCTGGTTCAACATTTTCAGAACCTTCCCAAAGTTCTGCCAATGATGCCAGCCACAGTAATTTGGATAGAAAATCTTCAGCCGACTCAAAGACACCACCCAAGAAGGATGGTTTCCAGGTGAAATCTGGCATTTGGGCTGATTCACTTAGCCGTGGACTGATTGATCTTAATATAACTGGTCCCAAGAAGGTGAATCTGGCGGATGTGGGGATTGTGGGTGGATTGAGTGACGGAGCAGATGAAAAGGAGAAAGGACCACCAACTTCTTTTTACATGGGTAGAGCAATGGGATCAGGGACTGGCCTCGGAAGATCTGGATTACAGGGAGCTGGAGATGATGACTTCTTCTCGAGTCTCAGTAGCGGTCAACAATATTCATATGGTGGTTTTCAAAAGTAG

Protein Analysis

585

Amino Acids

62.49

Weight (kDa)

4.87

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 27 - 147 1.3e-42 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AciI CCGC 3 cut(s) 1220, 1559, 1722
AclWI GGATC 8 cut(s) 295, 607, 711, 821, 888, 1286, 1336, 1657
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 3 cut(s) 80, 1098, 1419
AcyI GRCGYC 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 4 cut(s) 75, 485, 767, 798
AfiI CCNNNNNNNGG 2 cut(s) 678, 1219
AgeI ACCGGT 1 cut(s) 1204
AgsI TTSAA 8 cut(s) 70, 353, 427, 588, 616, 774, 1368, 1751
AjnI CCWGG 4 cut(s) 474, 946, 1065, 1473
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 5 cut(s) 464, 558, 867, 995, 1688
AluI AGCT 5 cut(s) 464, 558, 867, 995, 1688
Alw26I GTCTC 3 cut(s) 215, 630, 1718
AlwI GGATC 8 cut(s) 295, 607, 711, 821, 888, 1286, 1336, 1657
AlwNI CAGNNNCTG 3 cut(s) 929, 1076, 1658
Ama87I CYCGRG 1 cut(s) 1708
AoxI GGCC 4 cut(s) 159, 418, 1221, 1660
ApeKI GCWGC 9 cut(s) 464, 467, 555, 693, 854, 857, 992, 1240, 1301
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AsiGI ACCGGT 1 cut(s) 1204
AsiSI GCGATCGC 1 cut(s) 574
Asp700I GAANNNNTTC 2 cut(s) 17, 1432
Asp718I GGTACC 1 cut(s) 73
AspS9I GGNCC 6 cut(s) 31, 125, 418, 1222, 1538, 1613
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 6 cut(s) 64, 917, 1194, 1342, 1489, 1561
AvaI CYCGRG 1 cut(s) 1708
AvaII GGWCC 4 cut(s) 31, 125, 1538, 1613
BaeI ACNNNNGTAYC 4 cut(s) 1035, 1068, 1086, 1119
BanI GGYRCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 831
BbsI GAAGAC 1 cut(s) 657
BbvI GCAGC 9 cut(s) 451, 454, 567, 705, 841, 844, 1004, 1252, 1288
BccI CCATC 4 cut(s) 76, 181, 1319, 1460
BceAI ACGGC 3 cut(s) 672, 1289, 1494
BciT130I CCWGG 4 cut(s) 476, 948, 1067, 1475
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 3 cut(s) 215, 630, 1718
BfaI CTAG 2 cut(s) 675, 792
BglII AGATCT 1 cut(s) 1670
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 5 cut(s) 35, 476, 948, 1067, 1475
Bme18I GGWCC 4 cut(s) 31, 125, 1538, 1613
BmeT110I CYCGRG 1 cut(s) 1708
BmgT120I GGNCC 6 cut(s) 31, 125, 418, 1222, 1538, 1613
BmiI GGNNCC 4 cut(s) 75, 126, 1224, 1540
BmrFI CCNGG 5 cut(s) 35, 476, 948, 1067, 1475
BmrI ACTGGG 2 cut(s) 513, 774
BmsI GCATC 7 cut(s) 91, 907, 935, 979, 1030, 1081, 1393
BmuI ACTGGG 2 cut(s) 513, 774
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 657
BpmI CTGGAG 3 cut(s) 906, 1149, 1710
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 825
BsaHI GRCGYC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 5 cut(s) 119, 688, 1065, 1510, 1663
BsaWI WCCGGW 2 cut(s) 76, 1204
Bsc4I CCNNNNNNNGG 2 cut(s) 678, 1219
Bse118I RCCGGY 1 cut(s) 1204
Bse1I ACTGG 8 cut(s) 239, 508, 723, 780, 1132, 1232, 1540, 1663
Bse3DI GCAATG 1 cut(s) 1650
Bse8I GATNNNNATC 1 cut(s) 825
BseBI CCWGG 4 cut(s) 476, 948, 1067, 1475
BseDI CCNNGG 5 cut(s) 119, 688, 1065, 1510, 1663
BseGI GGATG 7 cut(s) 106, 719, 811, 823, 922, 1471, 1567
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 2 cut(s) 678, 1219
BseMI GCAATG 1 cut(s) 1650
BseMII CTCAG 3 cut(s) 1160, 1202, 1729
BseNI ACTGG 8 cut(s) 239, 508, 723, 780, 1132, 1232, 1540, 1663
BseXI GCAGC 9 cut(s) 451, 454, 567, 705, 841, 844, 1004, 1252, 1288
BsgI GTGCAG 1 cut(s) 1251
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 4 cut(s) 161, 420, 1223, 1662
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 1204
BsiEI CGRYCG 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 1708
BsiSI CCGG 3 cut(s) 34, 77, 1205
BslFI GGGAC 3 cut(s) 850, 1524, 1669
BslI CCNNNNNNNGG 2 cut(s) 678, 1219
BsmAI GTCTC 3 cut(s) 215, 630, 1718
BsmFI GGGAC 3 cut(s) 850, 1524, 1669
BsmI GAATGC 1 cut(s) 1156
BsnI GGCC 4 cut(s) 161, 420, 1223, 1662
Bso31I GGTCTC 1 cut(s) 630
BsoBI CYCGRG 1 cut(s) 1708
BspACI CCGC 3 cut(s) 1220, 1559, 1722
BspANI GGCC 4 cut(s) 161, 420, 1223, 1662
BspCNI CTCAG 3 cut(s) 1159, 1201, 1728
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 4 cut(s) 75, 126, 1224, 1540
BspPI GGATC 8 cut(s) 295, 607, 711, 821, 888, 1286, 1336, 1657
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 630
BsrDI GCAATG 1 cut(s) 1650
BsrFI RCCGGY 1 cut(s) 1204
BsrI ACTGG 8 cut(s) 239, 508, 723, 780, 1132, 1232, 1540, 1663
BssAI RCCGGY 1 cut(s) 1204
BssECI CCNNGG 5 cut(s) 119, 688, 1065, 1510, 1663
BssNI GRCGYC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 4 cut(s) 476, 948, 1067, 1475
Bst4CI ACNGT 4 cut(s) 31, 770, 1319, 1415
Bst6I CTCTTC 1 cut(s) 933
BstACI GRCGYC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 1408
BstDEI CTNAG 6 cut(s) 165, 849, 1146, 1188, 1505, 1715
BstDSI CCRYGG 2 cut(s) 688, 1510
BstENI CCTNNNNNAGG 1 cut(s) 676
BstF5I GGATG 7 cut(s) 106, 719, 811, 823, 922, 1471, 1567
BstMAI GTCTC 3 cut(s) 215, 630, 1718
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 5 cut(s) 152, 693, 992, 1130, 1403
BstNI CCWGG 4 cut(s) 476, 948, 1067, 1475
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 5 cut(s) 33, 474, 946, 1065, 1473
BstV1I GCAGC 9 cut(s) 451, 454, 567, 705, 841, 844, 1004, 1252, 1288
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 4 cut(s) 599, 880, 1328, 1670
BstYI RGATCY 4 cut(s) 599, 880, 1328, 1670
BsuRI GGCC 4 cut(s) 161, 420, 1223, 1662
BtgI CCRYGG 2 cut(s) 688, 1510
BtsCI GGATG 7 cut(s) 106, 719, 811, 823, 922, 1471, 1567
BtsIMutI CAGTG 2 cut(s) 730, 1074
Cac8I GCNNGC 1 cut(s) 1408
CaiI CAGNNNCTG 3 cut(s) 929, 1076, 1658
CciI TCATGA 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 1204
Cfr13I GGNCC 6 cut(s) 31, 125, 418, 1222, 1538, 1613
CpoI CGGWCCG 1 cut(s) 31
CseI GACGC 1 cut(s) 227
Csp6I GTAC 4 cut(s) 74, 484, 766, 797
CspAI ACCGGT 1 cut(s) 1204
CspCI CAANNNNNGTGG 2 cut(s) 858, 893
CspI CGGWCCG 1 cut(s) 31
CviAII CATG 6 cut(s) 10, 131, 284, 913, 952, 1633
CviQI GTAC 4 cut(s) 74, 484, 766, 797
DdeI CTNAG 6 cut(s) 165, 849, 1146, 1188, 1505, 1715
DraIII CACNNNGTG 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 933
EarI CTCTTC 1 cut(s) 933
EciI GGCGGA 1 cut(s) 1574
Eco130I CCWWGG 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 4 cut(s) 31, 125, 1538, 1613
Eco57I CTGAAG 3 cut(s) 80, 1098, 1419
Eco88I CYCGRG 1 cut(s) 1708
EcoNI CCTNNNNNAGG 1 cut(s) 676
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 4 cut(s) 474, 946, 1065, 1473
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 6 cut(s) 13, 134, 287, 916, 955, 1636
FaqI GGGAC 3 cut(s) 850, 1524, 1669
FatI CATG 6 cut(s) 9, 130, 283, 912, 951, 1632
FauNDI CATATG 1 cut(s) 1738
FokI GGATG 7 cut(s) 113, 706, 818, 830, 929, 1478, 1574
FspBI CTAG 2 cut(s) 675, 792
GsuI CTGGAG 3 cut(s) 906, 1149, 1710
HaeIII GGCC 4 cut(s) 161, 420, 1223, 1662
HapII CCGG 3 cut(s) 34, 77, 1205
HgaI GACGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 6 cut(s) 13, 134, 287, 916, 955, 1636
HincII GTYRAC 2 cut(s) 1210, 1727
HindII GTYRAC 2 cut(s) 1210, 1727
HinfI GANTC 7 cut(s) 55, 755, 1347, 1442, 1499, 1552, 1711
HpaII CCGG 3 cut(s) 34, 77, 1205
HphI GGTGA 6 cut(s) 64, 917, 1194, 1342, 1489, 1561
Hpy166II GTNNAC 5 cut(s) 797, 1210, 1257, 1514, 1727
Hpy188III TCNNGA 5 cut(s) 10, 707, 935, 1674, 1708
Hpy8I GTNNAC 5 cut(s) 797, 1210, 1257, 1514, 1727
HpyAV CCTTC 9 cut(s) 7, 55, 64, 85, 367, 394, 1392, 1456, 1540
HpyCH4III ACNGT 4 cut(s) 31, 770, 1319, 1415
HpyCH4IV ACGT 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 693, 992, 1130, 1403
HpyF3I CTNAG 6 cut(s) 165, 849, 1146, 1188, 1505, 1715
HpySE526I ACGT 1 cut(s) 295
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 6 cut(s) 13, 134, 287, 916, 955, 1636
KpnI GGTACC 1 cut(s) 77
LmnI GCTCC 4 cut(s) 925, 1130, 1592, 1685
Lsp1109I GCAGC 9 cut(s) 451, 454, 567, 705, 841, 844, 1004, 1252, 1288
LweI GCATC 7 cut(s) 91, 907, 935, 979, 1030, 1081, 1393
MaeI CTAG 2 cut(s) 675, 792
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 279, 681, 1586
MboII GAAGA 8 cut(s) 409, 662, 676, 950, 1191, 1425, 1680, 1696
MflI RGATCY 4 cut(s) 599, 880, 1328, 1670
MluCI AATT 2 cut(s) 170, 1417
MlyI GAGTC 3 cut(s) 749, 1436, 1720
MroXI GAANNNNTTC 2 cut(s) 17, 1432
MseI TTAA 3 cut(s) 729, 1314, 1527
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 3 cut(s) 34, 77, 1205
MspR9I CCNGG 5 cut(s) 35, 476, 948, 1067, 1475
Mva1269I GAATGC 1 cut(s) 1156
MvaI CCWGG 4 cut(s) 476, 948, 1067, 1475
MwoI GCNNNNNNNGC 5 cut(s) 152, 693, 992, 1130, 1403
NciI CCSGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 1738
NlaIII CATG 6 cut(s) 13, 134, 287, 916, 955, 1636
NlaIV GGNNCC 4 cut(s) 75, 126, 1224, 1540
NmuCI GTSAC 3 cut(s) 279, 681, 1586
PaeR7I CTCGAG 1 cut(s) 1708
PagI TCATGA 1 cut(s) 9
PctI GAATGC 1 cut(s) 1156
PdmI GAANNNNTTC 2 cut(s) 17, 1432
PfeI GAWTC 4 cut(s) 55, 1347, 1499, 1552
PfoI TCCNGGA 1 cut(s) 33
PinAI ACCGGT 1 cut(s) 1204
Ple19I CGATCG 1 cut(s) 574
PleI GAGTC 3 cut(s) 749, 1436, 1719
PpsI GAGTC 3 cut(s) 749, 1436, 1719
PpuMI RGGWCCY 1 cut(s) 125
PshAI GACNNNNGTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 4 cut(s) 474, 946, 1065, 1473
PspGI CCWGG 4 cut(s) 474, 946, 1065, 1473
PspN4I GGNNCC 4 cut(s) 75, 126, 1224, 1540
PspPI GGNCC 6 cut(s) 31, 125, 418, 1222, 1538, 1613
PspPPI RGGWCCY 1 cut(s) 125
PstNI CAGNNNCTG 3 cut(s) 929, 1076, 1658
PsuI RGATCY 4 cut(s) 599, 880, 1328, 1670
PvuI CGATCG 1 cut(s) 574
RgaI GCGATCGC 1 cut(s) 574
RsaI GTAC 4 cut(s) 75, 485, 767, 798
RsaNI GTAC 4 cut(s) 74, 484, 766, 797
RseI CAYNNNNRTG 1 cut(s) 14
Rsr2I CGGWCCG 1 cut(s) 31
RsrII CGGWCCG 1 cut(s) 31
SaqAI TTAA 3 cut(s) 729, 1314, 1527
Sau96I GGNCC 6 cut(s) 31, 125, 418, 1222, 1538, 1613
ScaI AGTACT 1 cut(s) 485
SchI GAGTC 3 cut(s) 749, 1436, 1720
ScrFI CCNGG 5 cut(s) 35, 476, 948, 1067, 1475
SfaAI GCGATCGC 1 cut(s) 574
SfaNI GCATC 7 cut(s) 91, 907, 935, 979, 1030, 1081, 1393
Sfr274I CTCGAG 1 cut(s) 1708
SgfI GCGATCGC 1 cut(s) 574
SinI GGWCC 4 cut(s) 31, 125, 1538, 1613
SlaI CTCGAG 1 cut(s) 1708
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 343, 1708
SmoI CTYRAG 2 cut(s) 343, 1708
Sse9I AATT 2 cut(s) 170, 1417
SsiI CCGC 3 cut(s) 1220, 1559, 1722
SspI AATATT 1 cut(s) 1733
SspMI CTAG 2 cut(s) 675, 792
StyD4I CCNGG 5 cut(s) 33, 474, 946, 1065, 1473
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 4 cut(s) 31, 770, 1319, 1415
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 21, 1709
TasI AATT 2 cut(s) 170, 1417
TatI WGTACW 3 cut(s) 483, 765, 796
TauI GCSGC 1 cut(s) 1223
TfiI GAWTC 4 cut(s) 55, 1347, 1499, 1552
Tru1I TTAA 3 cut(s) 729, 1314, 1527
Tru9I TTAA 3 cut(s) 729, 1314, 1527
TscAI CASTG 2 cut(s) 730, 1081
TseFI GTSAC 3 cut(s) 279, 681, 1586
TseI GCWGC 9 cut(s) 464, 467, 555, 693, 854, 857, 992, 1240, 1301
Tsp45I GTSAC 3 cut(s) 279, 681, 1586
TspDTI ATGAA 9 cut(s) 26, 129, 486, 663, 708, 954, 968, 1614, 1725
TspGWI ACGGA 3 cut(s) 122, 1040, 1605
TspRI CASTG 2 cut(s) 730, 1081
VpaK11BI GGWCC 4 cut(s) 31, 125, 1538, 1613
XagI CCTNNNNNAGG 1 cut(s) 676
XapI RAATTY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 2 cut(s) 1124, 1481
XhoI CTCGAG 1 cut(s) 1708
XmnI GAANNNNTTC 2 cut(s) 17, 1432
XspI CTAG 2 cut(s) 675, 792
ZrmI AGTACT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.