Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004765

Physical Location & Seq

Genomic Coordinates Forward (+)

70240860 .. 70245511

Gene Structure 4652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG503300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGTTATGAATGTTTTATGGACAAGATTGAGTGAGACAGGCAAGGACTGGCGTCTTGTCTATAAGTCATTGGCTGTCATAGAGTATCTGGTGTCACATGGATCGGAACGTGCTGTTGATGATATTATAGAACATACTTTCCAAATCTCATCACTCTCAAGTTTTGAATATGTTGAGCCAAGTGGGAAGGATATGGGAATAAATGTGAGGAAGAAGGCTGAAACCATTGTGGCCCTTTTGAATAATAAAGATAAAATACAAGAAGTTAGAAATAAAGCTGCTGCAAACCAGGACAAGTACTTTGGACTTTCATCTACTGGGATAACATACAAGTCAGGTTCAGCGACTTCGTCCTCTTATAGTAGTGGCAGCTATCAAAGTAGCGATCGCTATGGAGGTTCAAGTGGTGTAGGATCTGGCGATAGGTTCAGGGATAACTATAAGGACAGAGACCAATATGATGAAGACAAGTTTGAGAAGAAAACCTCTAGTAGGTCACGCCGTGGCAGCAGAAAGGATCAGGATAATGTTTCATCCAGTGTTAAAAAGTCATCATATAAGACAAATGACTCTGATAAGTACAGTTCAAATCCCAGTCAGACCGCAAGTGTACTTTCAGATGATTATGAGGATGATTTTGATCCACGGGGGACTTCTACTACTAAGGCTGCTGCTGGAAGCTCAAACCAAGTGGATCTGTTTGGACAAAGTTTGATTGGTGATCTCATGGATGCTCCAGCATCTGTTCCCGAAGAGAAGCCTGGCATGAATAGTGGTTCATCAGAGGTTGATCTGTTTGCAGATGCAGCTTTTGTATCAGCACCACCACAGGCAGAAACGGAAGCATTTGCAGACGCAACTTTTGTATCAGCACCTACCCAGGCAGACACTGAAGCATTTGCAGATGCAACTTTTGTATCAGCACCACCCCAGAAAGCAACTGGAGCAAGTTCTCAAACTCAGAATGGTGTTGATCTATTTGCTTCCCAACCAACCATTTCTCAGTCGGCTTCTTCACCGGTTGACCTCTTTGCGGCCCCTGTTCCAGTTATGCAGCCAGAAACCAAGTCCACAAGTCCTGCACCGACAAACACCAACATTGTTGATCCCTTTGCTGCCGTTCCACTTAACAGTTTTGATGGATCTGATTTCTTGGGGGGATTCACCTCTCACTCTGGTTCAACATTTTCAGAACCTTCCCAAAGTTCTGCCAATGATGCCAGCCACAGTAATTTGGATAGAAAATCTTCAGCCGACTCAAAGACACCACCCAAGAAGGATGGTTTCCAGGTGAAATCTGGCATTTGGGCTGATTCACTTAGCCGTGGACTGATTGATCTTAATATAACTGGTCCCAAGAAGGTGAATCTGGCGGATGTGGGGATTGTGGGTGGATTGAGTGACGGAGCAGATGAAAGGGAGAAAGGACCACCAACTTCTTTTTACATGGGTAGAGCAATGGGATCAGGGACGGGCCTCGGAAGATCTGGATTACAGGGAGCTGGAGATGATGACTTCTTCTCGAGTCTCAGTAGCGGTCAACAGTATTCATATGGTGGTTTTCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005856 GO:0005884 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009579 GO:0012505 GO:0015031 GO:0015629 GO:0015833 GO:0019899 GO:0030276 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

523

Amino Acids

55.49

Weight (kDa)

4.82

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ENTH	PF01417	2 - 85	6.9e-28	ENTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11710 AT5G11710 AT5G11710
fragaria_vesca	FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320
malus_domestica	MD08G1074500.v1.1 MD15G1062200.v1.1
prunus_persica	Prupe.1G416200_v2.0.a1 Prupe.1G416200_v2.0.a1 Prupe.1G416200_v2.0.a1
pyrus_communis	pycom08g06150 pycom15g05880
rosa_chinensis	RchiOBHm_Chr6g0310371
rosa_laevigata	RLG00000010488
rosa_multiflora	Rmu_sc0002348.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158610
rosa_rugosa	Rorug06G0379400 Rorug06G0379400 Rorug06G0379500
rosa_samantha	Rh6AG493600 Rh6BG503300 Rh6CG508300 Rh6DG494400
rosa_wichuraiana	Rw6G042950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	603, 1034, 1373, 1536
AclWI	GGATC	8 cut(s)	109, 421, 525, 635, 702, 1100, 1150, 1471
AcuI	CTGAAG	2 cut(s)	912, 1233
AcyI	GRCGYC	1 cut(s)	52
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	299, 581, 612
AfiI	CCNNNNNNNGG	2 cut(s)	492, 1033
AgeI	ACCGGT	1 cut(s)	1018
AgsI	TTSAA	6 cut(s)	167, 241, 402, 588, 1182, 1565
AjnI	CCWGG	4 cut(s)	288, 760, 879, 1287
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
AluBI	AGCT	5 cut(s)	278, 372, 681, 809, 1502
AluI	AGCT	5 cut(s)	278, 372, 681, 809, 1502
Alw26I	GTCTC	3 cut(s)	29, 444, 1532
AlwI	GGATC	8 cut(s)	109, 421, 525, 635, 702, 1100, 1150, 1471
AlwNI	CAGNNNCTG	2 cut(s)	743, 890
Ama87I	CYCGRG	1 cut(s)	1522
AoxI	GGCC	3 cut(s)	231, 1035, 1474
ApeKI	GCWGC	9 cut(s)	278, 281, 369, 507, 668, 671, 806, 1054, 1115
ArsI	GACNNNNNNTTYG	4 cut(s)	284, 316, 845, 877
AsiGI	ACCGGT	1 cut(s)	1018
AsiSI	GCGATCGC	1 cut(s)	388
Asp700I	GAANNNNTTC	1 cut(s)	1246
AspS9I	GGNCC	5 cut(s)	232, 1036, 1352, 1427, 1474
AsuHPI	GGTGA	5 cut(s)	731, 1008, 1156, 1303, 1375
AvaI	CYCGRG	1 cut(s)	1522
AvaII	GGWCC	2 cut(s)	1352, 1427
BaeI	ACNNNNGTAYC	4 cut(s)	849, 882, 900, 933
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	9 cut(s)	265, 268, 381, 519, 655, 658, 818, 1066, 1102
BccI	CCATC	2 cut(s)	1133, 1274
BceAI	ACGGC	3 cut(s)	486, 1103, 1308
BciT130I	CCWGG	4 cut(s)	290, 762, 881, 1289
BcoDI	GTCTC	3 cut(s)	29, 444, 1532
BfaI	CTAG	1 cut(s)	489
BglII	AGATCT	1 cut(s)	1484
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	4 cut(s)	290, 762, 881, 1289
Bme18I	GGWCC	2 cut(s)	1352, 1427
BmeT110I	CYCGRG	1 cut(s)	1522
BmgT120I	GGNCC	5 cut(s)	232, 1036, 1352, 1427, 1474
BmiI	GGNNCC	2 cut(s)	1038, 1354
BmrFI	CCNGG	4 cut(s)	290, 762, 881, 1289
BmrI	ACTGGG	2 cut(s)	327, 588
BmsI	GCATC	5 cut(s)	721, 749, 793, 895, 1207
BmuI	ACTGGG	2 cut(s)	327, 588
BoxI	GACNNNNGTC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	3 cut(s)	720, 963, 1524
BpuEI	CTTGAG	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	639
BsaHI	GRCGYC	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	5 cut(s)	502, 644, 879, 1324, 1477
BsaWI	WCCGGW	1 cut(s)	1018
Bsc4I	CCNNNNNNNGG	2 cut(s)	492, 1033
Bse118I	RCCGGY	1 cut(s)	1018
Bse1I	ACTGG	7 cut(s)	53, 322, 537, 594, 946, 1046, 1354
Bse3DI	GCAATG	1 cut(s)	1464
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	4 cut(s)	290, 762, 881, 1289
BseDI	CCNNGG	5 cut(s)	502, 644, 879, 1324, 1477
BseGI	GGATG	5 cut(s)	533, 637, 736, 1285, 1381
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	492, 1033
BseMI	GCAATG	1 cut(s)	1464
BseMII	CTCAG	3 cut(s)	974, 1016, 1543
BseNI	ACTGG	7 cut(s)	53, 322, 537, 594, 946, 1046, 1354
BseXI	GCAGC	9 cut(s)	265, 268, 381, 519, 655, 658, 818, 1066, 1102
BsgI	GTGCAG	1 cut(s)	1065
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	233, 1037, 1476
BshTI	ACCGGT	1 cut(s)	1018
BsiEI	CGRYCG	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	1522
BsiSI	CCGG	1 cut(s)	1019
BslFI	GGGAC	3 cut(s)	664, 1338, 1483
BslI	CCNNNNNNNGG	2 cut(s)	492, 1033
BsmAI	GTCTC	3 cut(s)	29, 444, 1532
BsmFI	GGGAC	3 cut(s)	664, 1338, 1483
BsnI	GGCC	3 cut(s)	233, 1037, 1476
Bso31I	GGTCTC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	1522
BspACI	CCGC	4 cut(s)	603, 1034, 1373, 1536
BspANI	GGCC	3 cut(s)	233, 1037, 1476
BspCNI	CTCAG	3 cut(s)	973, 1015, 1542
BspLI	GGNNCC	2 cut(s)	1038, 1354
BspPI	GGATC	8 cut(s)	109, 421, 525, 635, 702, 1100, 1150, 1471
BspTNI	GGTCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	1464
BsrFI	RCCGGY	1 cut(s)	1018
BsrI	ACTGG	7 cut(s)	53, 322, 537, 594, 946, 1046, 1354
BssAI	RCCGGY	1 cut(s)	1018
BssECI	CCNNGG	5 cut(s)	502, 644, 879, 1324, 1477
BssNI	GRCGYC	1 cut(s)	52
Bst2UI	CCWGG	4 cut(s)	290, 762, 881, 1289
Bst4CI	ACNGT	4 cut(s)	584, 1133, 1229, 1545
Bst6I	CTCTTC	1 cut(s)	747
BstACI	GRCGYC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	1222
BstDEI	CTNAG	5 cut(s)	663, 960, 1002, 1319, 1529
BstDSI	CCRYGG	3 cut(s)	502, 644, 1324
BstENI	CCTNNNNNAGG	1 cut(s)	490
BstF5I	GGATG	5 cut(s)	533, 637, 736, 1285, 1381
BstMAI	GTCTC	3 cut(s)	29, 444, 1532
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	4 cut(s)	507, 806, 944, 1217
BstNI	CCWGG	4 cut(s)	290, 762, 881, 1289
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	4 cut(s)	288, 760, 879, 1287
BstV1I	GCAGC	9 cut(s)	265, 268, 381, 519, 655, 658, 818, 1066, 1102
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	4 cut(s)	413, 694, 1142, 1484
BstYI	RGATCY	4 cut(s)	413, 694, 1142, 1484
BsuRI	GGCC	3 cut(s)	233, 1037, 1476
BtgI	CCRYGG	3 cut(s)	502, 644, 1324
BtsCI	GGATG	5 cut(s)	533, 637, 736, 1285, 1381
BtsIMutI	CAGTG	2 cut(s)	544, 888
Cac8I	GCNNGC	1 cut(s)	1222
CaiI	CAGNNNCTG	2 cut(s)	743, 890
Cfr10I	RCCGGY	1 cut(s)	1018
Cfr13I	GGNCC	5 cut(s)	232, 1036, 1352, 1427, 1474
CseI	GACGC	2 cut(s)	41, 863
Csp6I	GTAC	3 cut(s)	298, 580, 611
CspAI	ACCGGT	1 cut(s)	1018
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	4 cut(s)	98, 727, 766, 1447
CviQI	GTAC	3 cut(s)	298, 580, 611
DdeI	CTNAG	5 cut(s)	663, 960, 1002, 1319, 1529
DraIII	CACNNNGTG	1 cut(s)	503
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
EciI	GGCGGA	1 cut(s)	1388
Eco31I	GGTCTC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	1352, 1427
Eco57I	CTGAAG	2 cut(s)	912, 1233
Eco88I	CYCGRG	1 cut(s)	1522
EcoNI	CCTNNNNNAGG	1 cut(s)	490
EcoRII	CCWGG	4 cut(s)	288, 760, 879, 1287
FaeI	CATG	4 cut(s)	101, 730, 769, 1450
FaqI	GGGAC	3 cut(s)	664, 1338, 1483
FatI	CATG	4 cut(s)	97, 726, 765, 1446
FauNDI	CATATG	1 cut(s)	1552
FokI	GGATG	5 cut(s)	520, 644, 743, 1292, 1388
FspBI	CTAG	1 cut(s)	489
GsuI	CTGGAG	3 cut(s)	720, 963, 1524
HaeIII	GGCC	3 cut(s)	233, 1037, 1476
HapII	CCGG	1 cut(s)	1019
HgaI	GACGC	2 cut(s)	41, 863
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	101, 730, 769, 1450
HincII	GTYRAC	2 cut(s)	1024, 1541
HindII	GTYRAC	2 cut(s)	1024, 1541
HinfI	GANTC	6 cut(s)	569, 1161, 1256, 1313, 1366, 1525
HpaII	CCGG	1 cut(s)	1019
HphI	GGTGA	5 cut(s)	731, 1008, 1156, 1303, 1375
Hpy166II	GTNNAC	5 cut(s)	611, 1024, 1071, 1328, 1541
Hpy188I	TCNGA	9 cut(s)	106, 574, 600, 619, 784, 963, 1147, 1192, 1481
Hpy188III	TCNNGA	4 cut(s)	521, 749, 1488, 1522
Hpy8I	GTNNAC	5 cut(s)	611, 1024, 1071, 1328, 1541
HpyAV	CCTTC	5 cut(s)	181, 208, 1206, 1270, 1354
HpyCH4III	ACNGT	4 cut(s)	584, 1133, 1229, 1545
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	8 cut(s)	284, 800, 806, 851, 902, 908, 1054, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	507, 806, 944, 1217
HpyF3I	CTNAG	5 cut(s)	663, 960, 1002, 1319, 1529
HpySE526I	ACGT	1 cut(s)	109
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	4 cut(s)	101, 730, 769, 1450
LmnI	GCTCC	4 cut(s)	739, 944, 1406, 1499
Lsp1109I	GCAGC	9 cut(s)	265, 268, 381, 519, 655, 658, 818, 1066, 1102
LweI	GCATC	5 cut(s)	721, 749, 793, 895, 1207
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	93, 495, 1400
MboII	GAAGA	8 cut(s)	223, 476, 490, 764, 1005, 1239, 1494, 1510
MflI	RGATCY	4 cut(s)	413, 694, 1142, 1484
MluCI	AATT	1 cut(s)	1231
MlyI	GAGTC	3 cut(s)	563, 1250, 1534
MnlI	CCTC	9 cut(s)	201, 364, 389, 496, 622, 778, 1037, 1177, 1487
MroXI	GAANNNNTTC	1 cut(s)	1246
MseI	TTAA	3 cut(s)	543, 1128, 1341
MspI	CCGG	1 cut(s)	1019
MspR9I	CCNGG	4 cut(s)	290, 762, 881, 1289
MvaI	CCWGG	4 cut(s)	290, 762, 881, 1289
MwoI	GCNNNNNNNGC	4 cut(s)	507, 806, 944, 1217
NdeI	CATATG	1 cut(s)	1552
NlaIII	CATG	4 cut(s)	101, 730, 769, 1450
NlaIV	GGNNCC	2 cut(s)	1038, 1354
NmuCI	GTSAC	3 cut(s)	93, 495, 1400
PaeR7I	CTCGAG	1 cut(s)	1522
PdmI	GAANNNNTTC	1 cut(s)	1246
PfeI	GAWTC	3 cut(s)	1161, 1313, 1366
PflFI	GACNNNGTC	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	1018
Ple19I	CGATCG	1 cut(s)	388
PleI	GAGTC	3 cut(s)	563, 1250, 1533
PpsI	GAGTC	3 cut(s)	563, 1250, 1533
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	4 cut(s)	288, 760, 879, 1287
PspGI	CCWGG	4 cut(s)	288, 760, 879, 1287
PspN4I	GGNNCC	2 cut(s)	1038, 1354
PspPI	GGNCC	5 cut(s)	232, 1036, 1352, 1427, 1474
PstNI	CAGNNNCTG	2 cut(s)	743, 890
PsuI	RGATCY	4 cut(s)	413, 694, 1142, 1484
PsyI	GACNNNGTC	1 cut(s)	349
PvuI	CGATCG	1 cut(s)	388
RgaI	GCGATCGC	1 cut(s)	388
RsaI	GTAC	3 cut(s)	299, 581, 612
RsaNI	GTAC	3 cut(s)	298, 580, 611
SaqAI	TTAA	3 cut(s)	543, 1128, 1341
Sau96I	GGNCC	5 cut(s)	232, 1036, 1352, 1427, 1474
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	3 cut(s)	563, 1250, 1534
ScrFI	CCNGG	4 cut(s)	290, 762, 881, 1289
SfaAI	GCGATCGC	1 cut(s)	388
SfaNI	GCATC	5 cut(s)	721, 749, 793, 895, 1207
Sfr274I	CTCGAG	1 cut(s)	1522
SgfI	GCGATCGC	1 cut(s)	388
SinI	GGWCC	2 cut(s)	1352, 1427
SlaI	CTCGAG	1 cut(s)	1522
SmlI	CTYRAG	2 cut(s)	157, 1522
SmoI	CTYRAG	2 cut(s)	157, 1522
Sse9I	AATT	1 cut(s)	1231
SsiI	CCGC	4 cut(s)	603, 1034, 1373, 1536
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	4 cut(s)	288, 760, 879, 1287
TaaI	ACNGT	4 cut(s)	584, 1133, 1229, 1545
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	1523
TasI	AATT	1 cut(s)	1231
TatI	WGTACW	3 cut(s)	297, 579, 610
TauI	GCSGC	1 cut(s)	1037
TfiI	GAWTC	3 cut(s)	1161, 1313, 1366
Tru1I	TTAA	3 cut(s)	543, 1128, 1341
Tru9I	TTAA	3 cut(s)	543, 1128, 1341
TscAI	CASTG	2 cut(s)	544, 895
TseFI	GTSAC	3 cut(s)	93, 495, 1400
TseI	GCWGC	9 cut(s)	278, 281, 369, 507, 668, 671, 806, 1054, 1115
Tsp45I	GTSAC	3 cut(s)	93, 495, 1400
TspDTI	ATGAA	8 cut(s)	23, 300, 477, 522, 768, 782, 1428, 1539
TspGWI	ACGGA	2 cut(s)	854, 1419
TspRI	CASTG	2 cut(s)	544, 895
Tth111I	GACNNNGTC	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	1352, 1427
XagI	CCTNNNNNAGG	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	2 cut(s)	938, 1295
XhoI	CTCGAG	1 cut(s)	1522
XmnI	GAANNNNTTC	1 cut(s)	1246
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.