Rroxscaffold_7G00158610

Clathrin interactor EPSIN

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
1966354 .. 1970413
4060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158610.1

Sequence Viewer

Length: 1725 bp
ATGGATTTCATGAAGGTGTTCGATCAAACTGTCCGCGAAATGTTAGCTCTTCTAATCCTTGCCATTGCGAAAGAGGAGGTGAATCTGAAGGTGTTGAAGGTTCCGGAGATGGAACAGAAGGTATTGGATGCAACGGATAATGAACCTTGGGGTCCTCATGGCTCTGCATTGGCAGAGATCGCACAAGCCACTAAGAAATTTTCGGAATGTCAGATGGTTATGAATGTTTTATGGACAAGATTGAGTGAGACAGGCAAGGACTGGCGTCTTGTCTATAAGTCATTGGCTGTCATAGAGTATCTGGTGTCACATGGATCGGAACGTGCTGTTGATGATATTATAGAACATACTTTCCAAATCTCATCACTCTCAAGTTTTGAATATGTTGAGCCAAGTGGGAAGGATATGGGAATAAATGTGAGGAAGAAGGCTGAAACCATTGTGGCCCTTTTGAATAATAAAGATAAAATACAAGAAGTTAGAAATAAAGCTGCTGCAAACCAGGACAAGTACTTTGGACTTTCATCTACTGGGATAACATACAAGTCAGGTTCAGCGACTTCGTCCTCTTATAGTAGTGGCAGCTATCAAAGTAGCGATCGCTATGGAGGTTCAAGTGGTGTAGGATCTGGCGATAGGTTCAGGGATAACTATAAGGACAGAGACCAATATGATGAAGACAAGTTTGAGAAGAAAACCTCTAGTAGGTCACGCCGTGGCAGCAGAAAGGATCAGGATAATGTTTCATCCAGTGTTAAAAAGTCATCATATAAGACAAATGACTCTGATAAGTACAGTTCAAATCCGAGTCAGACCGCAAGTGTACTTTCGGATGATTATGAGGATGATTTTGATCCACGAGGGACTTCTACTACTAAGGCTGCTGCTGGAAGCTCAAACCAAGTGGATCTCTTTGGACAAAGTTTGATTGGTGATCTCATGGATGCTCCAGCATCTGTTCCCGAAGAGAAGCCTGGCATGAATAGTGGTTCATCAGAGGTTGATCTGTTTGCAGATGCAGCTTTTGTATCAGCACCACCACAGGCAGAAACAGAAGCATTTGCAGACGCAACTTTTGTATCAGCCCCTTCCCAGGCAGACACTGAAGCATTTGCAGATGCAACTTTTGTATCAGCACCACCCCAGAAAGCAACTGGAGCAAGTTCTCAAACTCAGAATGGTGTTGATCTATTTGCTTCCCAACCAACCATTTCTCAGTCGGCTTCTTCACCGGTTGACCTCTTTGCGGCCCCTGTTCCAGTTATGCAGCCAGAAACCAAGTCCACAAGTCCTGCACCGACAAACACCAACATTGTTGATCCCTTTGCTGCTGTTCCACTTAACAAACCTTCCCAAAGTTCTGCCAATGTTGCCAGCCACAGTAATTTGGATAGAAAATCTTCAGCTGACTCAAAGACGCCACCCAAGAAGGATGGTTTCCAGGTGAAATCTGGCATTTGGGCTGATTCATTTAGCCGTGGACTGATTGATCTTAATATAACTGGTCCCAAGAAGGTGAATCTGGCGGATGTGGGGATTGTGGGTGGATTGAGTGACGGAGCAGATGAAAGGGAGAAAGGACCACCAACTTCTTTCTACATGGGTAGAGCAATGGGATCAGGGACGGGCCTCGGACGATCTGGATTACAGGGAGCTGGAGATGATGACTTCTTCTCGAGTCTCAGTAGCGGTCAACAGTATTCATATGGTGGTTTTCAAAAGTAG

Protein Analysis

574

Amino Acids

61.45

Weight (kDa)

4.94

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 36 - 156 4.4e-43 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 5 cut(s) 34, 816, 1247, 1526, 1689
AclWI GGATC 7 cut(s) 322, 634, 738, 848, 915, 1313, 1624
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 3 cut(s) 107, 1125, 1386
AcyI GRCGYC 2 cut(s) 265, 1418
AdeI CACNNNGTG 1 cut(s) 716
AfaI GTAC 3 cut(s) 512, 794, 825
AfiI CCNNNNNNNGG 3 cut(s) 705, 1093, 1246
AgeI ACCGGT 1 cut(s) 1231
AgsI TTSAA 6 cut(s) 97, 380, 454, 615, 801, 1718
AjnI CCWGG 4 cut(s) 501, 973, 1092, 1440
AloI GAACNNNNNNTCC 2 cut(s) 336, 368
AluBI AGCT 7 cut(s) 47, 491, 585, 894, 1022, 1406, 1655
AluI AGCT 7 cut(s) 47, 491, 585, 894, 1022, 1406, 1655
Alw26I GTCTC 3 cut(s) 242, 657, 1685
AlwI GGATC 7 cut(s) 322, 634, 738, 848, 915, 1313, 1624
AlwNI CAGNNNCTG 2 cut(s) 956, 1103
Ama87I CYCGRG 1 cut(s) 1675
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 3 cut(s) 444, 1248, 1627
ApeKI GCWGC 9 cut(s) 491, 494, 582, 720, 881, 884, 1019, 1267, 1328
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 4 cut(s) 497, 529, 1058, 1090
AsiGI ACCGGT 1 cut(s) 1231
AsiSI GCGATCGC 1 cut(s) 601
Asp700I GAANNNNTTC 2 cut(s) 17, 1399
AspS9I GGNCC 6 cut(s) 152, 445, 1249, 1505, 1580, 1627
AsuHPI GGTGA 5 cut(s) 91, 944, 1221, 1456, 1528
AvaI CYCGRG 1 cut(s) 1675
AvaII GGWCC 3 cut(s) 152, 1505, 1580
BaeI ACNNNNGTAYC 4 cut(s) 1062, 1095, 1113, 1146
BauI CACGAG 1 cut(s) 858
BbsI GAAGAC 1 cut(s) 684
BbvI GCAGC 9 cut(s) 478, 481, 594, 732, 868, 871, 1031, 1279, 1315
BccI CCATC 3 cut(s) 103, 208, 1427
BceAI ACGGC 2 cut(s) 699, 1461
BciT130I CCWGG 4 cut(s) 503, 975, 1094, 1442
BcoDI GTCTC 3 cut(s) 242, 657, 1685
BfaI CTAG 1 cut(s) 702
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 4 cut(s) 503, 975, 1094, 1442
Bme18I GGWCC 3 cut(s) 152, 1505, 1580
BmeT110I CYCGRG 1 cut(s) 1675
BmgT120I GGNCC 6 cut(s) 152, 445, 1249, 1505, 1580, 1627
BmiI GGNNCC 4 cut(s) 102, 153, 1251, 1507
BmrFI CCNGG 4 cut(s) 503, 975, 1094, 1442
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 5 cut(s) 118, 934, 962, 1006, 1108
BmuI ACTGGG 1 cut(s) 540
BoxI GACNNNNGTC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 684
BpmI CTGGAG 3 cut(s) 933, 1176, 1677
BpuEI CTTGAG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 2 cut(s) 265, 1418
BsaI GGTCTC 1 cut(s) 657
BsaJI CCNNGG 5 cut(s) 146, 715, 1092, 1477, 1630
BsaWI WCCGGW 2 cut(s) 103, 1231
Bsc4I CCNNNNNNNGG 3 cut(s) 705, 1093, 1246
Bse118I RCCGGY 1 cut(s) 1231
Bse1I ACTGG 6 cut(s) 266, 535, 750, 1159, 1259, 1507
Bse3DI GCAATG 2 cut(s) 63, 1617
Bse8I GATNNNNATC 1 cut(s) 852
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 4 cut(s) 503, 975, 1094, 1442
BseDI CCNNGG 5 cut(s) 146, 715, 1092, 1477, 1630
BseGI GGATG 7 cut(s) 133, 746, 838, 850, 949, 1438, 1534
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 3 cut(s) 705, 1093, 1246
BseMI GCAATG 2 cut(s) 63, 1617
BseMII CTCAG 3 cut(s) 1187, 1229, 1696
BseNI ACTGG 6 cut(s) 266, 535, 750, 1159, 1259, 1507
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 9 cut(s) 478, 481, 594, 732, 868, 871, 1031, 1279, 1315
BsgI GTGCAG 1 cut(s) 1278
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 601
BshFI GGCC 3 cut(s) 446, 1250, 1629
BshTI ACCGGT 1 cut(s) 1231
BsiEI CGRYCG 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 1675
BsiSI CCGG 2 cut(s) 104, 1232
BslFI GGGAC 3 cut(s) 877, 1491, 1636
BslI CCNNNNNNNGG 3 cut(s) 705, 1093, 1246
BsmAI GTCTC 3 cut(s) 242, 657, 1685
BsmFI GGGAC 3 cut(s) 877, 1491, 1636
BsnI GGCC 3 cut(s) 446, 1250, 1629
Bso31I GGTCTC 1 cut(s) 657
BsoBI CYCGRG 1 cut(s) 1675
Bsp13I TCCGGA 1 cut(s) 103
BspACI CCGC 5 cut(s) 34, 816, 1247, 1526, 1689
BspANI GGCC 3 cut(s) 446, 1250, 1629
BspCNI CTCAG 3 cut(s) 1186, 1228, 1695
BspEI TCCGGA 1 cut(s) 103
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 4 cut(s) 102, 153, 1251, 1507
BspPI GGATC 7 cut(s) 322, 634, 738, 848, 915, 1313, 1624
BspQI GCTCTTC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 657
BsrDI GCAATG 2 cut(s) 63, 1617
BsrFI RCCGGY 1 cut(s) 1231
BsrI ACTGG 6 cut(s) 266, 535, 750, 1159, 1259, 1507
BssAI RCCGGY 1 cut(s) 1231
BssECI CCNNGG 5 cut(s) 146, 715, 1092, 1477, 1630
BssNI GRCGYC 2 cut(s) 265, 1418
BssSI CACGAG 1 cut(s) 858
BssT1I CCWWGG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 858
Bst2UI CCWGG 4 cut(s) 503, 975, 1094, 1442
Bst4CI ACNGT 4 cut(s) 31, 797, 1382, 1698
Bst6I CTCTTC 2 cut(s) 54, 960
BstACI GRCGYC 2 cut(s) 265, 1418
BstC8I GCNNGC 1 cut(s) 1375
BstDEI CTNAG 5 cut(s) 192, 876, 1173, 1215, 1682
BstDSI CCRYGG 2 cut(s) 715, 1477
BstENI CCTNNNNNAGG 1 cut(s) 703
BstF5I GGATG 7 cut(s) 133, 746, 838, 850, 949, 1438, 1534
BstFNI CGCG 1 cut(s) 36
BstMAI GTCTC 3 cut(s) 242, 657, 1685
BstMCI CGRYCG 1 cut(s) 601
BstMWI GCNNNNNNNGC 5 cut(s) 179, 720, 1019, 1157, 1370
BstNI CCWGG 4 cut(s) 503, 975, 1094, 1442
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 4 cut(s) 501, 973, 1092, 1440
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 9 cut(s) 478, 481, 594, 732, 868, 871, 1031, 1279, 1315
BstV2I GAAGAC 1 cut(s) 684
BstX2I RGATCY 2 cut(s) 626, 907
BstYI RGATCY 2 cut(s) 626, 907
BsuRI GGCC 3 cut(s) 446, 1250, 1629
BtgI CCRYGG 2 cut(s) 715, 1477
BtsCI GGATG 7 cut(s) 133, 746, 838, 850, 949, 1438, 1534
BtsIMutI CAGTG 2 cut(s) 757, 1101
Cac8I GCNNGC 1 cut(s) 1375
CaiI CAGNNNCTG 2 cut(s) 956, 1103
CciI TCATGA 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 1231
Cfr13I GGNCC 6 cut(s) 152, 445, 1249, 1505, 1580, 1627
CseI GACGC 3 cut(s) 254, 1076, 1426
Csp6I GTAC 3 cut(s) 511, 793, 824
CspAI ACCGGT 1 cut(s) 1231
CspCI CAANNNNNGTGG 2 cut(s) 885, 920
CviAII CATG 6 cut(s) 10, 158, 311, 940, 979, 1600
CviQI GTAC 3 cut(s) 511, 793, 824
DdeI CTNAG 5 cut(s) 192, 876, 1173, 1215, 1682
DraIII CACNNNGTG 1 cut(s) 716
Eam1104I CTCTTC 2 cut(s) 54, 960
EarI CTCTTC 2 cut(s) 54, 960
EciI GGCGGA 1 cut(s) 1541
Eco130I CCWWGG 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 657
Eco47I GGWCC 3 cut(s) 152, 1505, 1580
Eco57I CTGAAG 3 cut(s) 107, 1125, 1386
Eco88I CYCGRG 1 cut(s) 1675
EcoNI CCTNNNNNAGG 1 cut(s) 703
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 4 cut(s) 501, 973, 1092, 1440
EcoT14I CCWWGG 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 6 cut(s) 13, 161, 314, 943, 982, 1603
FaqI GGGAC 3 cut(s) 877, 1491, 1636
FatI CATG 6 cut(s) 9, 157, 310, 939, 978, 1599
FauNDI CATATG 1 cut(s) 1705
FokI GGATG 7 cut(s) 140, 733, 845, 857, 956, 1445, 1541
FspBI CTAG 1 cut(s) 702
GsuI CTGGAG 3 cut(s) 933, 1176, 1677
HaeIII GGCC 3 cut(s) 446, 1250, 1629
HapII CCGG 2 cut(s) 104, 1232
HgaI GACGC 3 cut(s) 254, 1076, 1426
Hin1I GRCGYC 2 cut(s) 265, 1418
Hin1II CATG 6 cut(s) 13, 161, 314, 943, 982, 1603
HincII GTYRAC 2 cut(s) 1237, 1694
HindII GTYRAC 2 cut(s) 1237, 1694
HinfI GANTC 7 cut(s) 82, 782, 808, 1409, 1466, 1519, 1678
HpaII CCGG 2 cut(s) 104, 1232
HphI GGTGA 5 cut(s) 91, 944, 1221, 1456, 1528
Hpy166II GTNNAC 5 cut(s) 824, 1237, 1284, 1481, 1694
Hpy188III TCNNGA 6 cut(s) 10, 104, 734, 962, 1641, 1675
Hpy8I GTNNAC 5 cut(s) 824, 1237, 1284, 1481, 1694
HpyCH4III ACNGT 4 cut(s) 31, 797, 1382, 1698
HpyCH4IV ACGT 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 720, 1019, 1157, 1370
HpyF3I CTNAG 5 cut(s) 192, 876, 1173, 1215, 1682
HpySE526I ACGT 1 cut(s) 322
Hsp92I GRCGYC 2 cut(s) 265, 1418
Hsp92II CATG 6 cut(s) 13, 161, 314, 943, 982, 1603
Kpn2I TCCGGA 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 4 cut(s) 952, 1157, 1559, 1652
Lsp1109I GCAGC 9 cut(s) 478, 481, 594, 732, 868, 871, 1031, 1279, 1315
LweI GCATC 5 cut(s) 118, 934, 962, 1006, 1108
MaeI CTAG 1 cut(s) 702
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 3 cut(s) 306, 708, 1553
MboII GAAGA 8 cut(s) 41, 436, 689, 703, 977, 1218, 1392, 1663
MflI RGATCY 2 cut(s) 626, 907
MluCI AATT 2 cut(s) 197, 1384
MlyI GAGTC 4 cut(s) 776, 817, 1403, 1687
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 2 cut(s) 17, 1399
MseI TTAA 3 cut(s) 756, 1341, 1494
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 1406
MspI CCGG 2 cut(s) 104, 1232
MspR9I CCNGG 4 cut(s) 503, 975, 1094, 1442
MvaI CCWGG 4 cut(s) 503, 975, 1094, 1442
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 5 cut(s) 179, 720, 1019, 1157, 1370
NdeI CATATG 1 cut(s) 1705
NlaIII CATG 6 cut(s) 13, 161, 314, 943, 982, 1603
NlaIV GGNNCC 4 cut(s) 102, 153, 1251, 1507
NmuCI GTSAC 3 cut(s) 306, 708, 1553
PaeR7I CTCGAG 1 cut(s) 1675
PagI TCATGA 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 17, 1399
PfeI GAWTC 3 cut(s) 82, 1466, 1519
PflFI GACNNNGTC 1 cut(s) 562
PinAI ACCGGT 1 cut(s) 1231
Ple19I CGATCG 1 cut(s) 601
PleI GAGTC 4 cut(s) 776, 816, 1403, 1686
PpsI GAGTC 4 cut(s) 776, 816, 1403, 1686
PpuMI RGGWCCY 1 cut(s) 152
PshAI GACNNNNGTC 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 4 cut(s) 501, 973, 1092, 1440
PspGI CCWGG 4 cut(s) 501, 973, 1092, 1440
PspN4I GGNNCC 4 cut(s) 102, 153, 1251, 1507
PspPI GGNCC 6 cut(s) 152, 445, 1249, 1505, 1580, 1627
PspPPI RGGWCCY 1 cut(s) 152
PstNI CAGNNNCTG 2 cut(s) 956, 1103
PsuI RGATCY 2 cut(s) 626, 907
PsyI GACNNNGTC 1 cut(s) 562
PvuI CGATCG 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 1406
RgaI GCGATCGC 1 cut(s) 601
RsaI GTAC 3 cut(s) 512, 794, 825
RsaNI GTAC 3 cut(s) 511, 793, 824
RseI CAYNNNNRTG 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 756, 1341, 1494
Sau96I GGNCC 6 cut(s) 152, 445, 1249, 1505, 1580, 1627
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 4 cut(s) 776, 817, 1403, 1687
ScrFI CCNGG 4 cut(s) 503, 975, 1094, 1442
SfaAI GCGATCGC 1 cut(s) 601
SfaNI GCATC 5 cut(s) 118, 934, 962, 1006, 1108
Sfr274I CTCGAG 1 cut(s) 1675
SgfI GCGATCGC 1 cut(s) 601
SinI GGWCC 3 cut(s) 152, 1505, 1580
SlaI CTCGAG 1 cut(s) 1675
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 370, 1675
SmoI CTYRAG 2 cut(s) 370, 1675
Sse9I AATT 2 cut(s) 197, 1384
SsiI CCGC 5 cut(s) 34, 816, 1247, 1526, 1689
SspMI CTAG 1 cut(s) 702
StyD4I CCNGG 4 cut(s) 501, 973, 1092, 1440
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 4 cut(s) 31, 797, 1382, 1698
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 21, 1676
TasI AATT 2 cut(s) 197, 1384
TatI WGTACW 3 cut(s) 510, 792, 823
TauI GCSGC 1 cut(s) 1250
TfiI GAWTC 3 cut(s) 82, 1466, 1519
Tru1I TTAA 3 cut(s) 756, 1341, 1494
Tru9I TTAA 3 cut(s) 756, 1341, 1494
TscAI CASTG 2 cut(s) 757, 1108
TseFI GTSAC 3 cut(s) 306, 708, 1553
TseI GCWGC 9 cut(s) 491, 494, 582, 720, 881, 884, 1019, 1267, 1328
Tsp45I GTSAC 3 cut(s) 306, 708, 1553
TspGWI ACGGA 2 cut(s) 149, 1572
TspRI CASTG 2 cut(s) 757, 1108
Tth111I GACNNNGTC 1 cut(s) 562
VpaK11BI GGWCC 3 cut(s) 152, 1505, 1580
XagI CCTNNNNNAGG 1 cut(s) 703
XapI RAATTY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 2 cut(s) 1151, 1448
XhoI CTCGAG 1 cut(s) 1675
XmnI GAANNNNTTC 2 cut(s) 17, 1399
XspI CTAG 1 cut(s) 702
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.