Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004765

Physical Location & Seq

Genomic Coordinates Forward (+)

52546066 .. 52547467

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0379500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGTCTCAGGCTAAAGAAGCAAAGGTTCCAGCCACAATACTAGCCATTGGGACTGCAAATCCAGTAAGCTGTTACTACCAAGAAGACTATCCCGATTTCTTGTTCAAAGTCACCAAAAGCGAGCACAAGACCGAATTAAAAGACAAGTTCAAACGCATATGTGAAAAGTCGATGGTAAAGAAGCGATATCTGGGAGTCACAGAAGAGAATCTAAAAGCCAACCCTAACATATGCAGCTACAAGGCTCCCTCACTCGACGCACGTCAAGACTTACTGATTCACGAGGTCCCCAAACTCGGTAAAGAAGCGGCGTTGAAGGCCATCAGAGAATGGGGCCAACCCATTTCAAGCCTCACCCACCTCATCTTCTGCACAGCTTCCTGCGTCGACATGCCCGGTGCCGACTTTCAGCTCGTCAAGCTCCTCGGCCTAAATCCATCTATCAACCGGTTCATGATCTACCAGCAAGGCTGCTTTGCTGGTGGGACGGTGCTACGGATTGCCAAGGACGTGGCCGAGAACAATGCCGGAGCTCGTGTTCTGATCGTGTGCTGTGAGATCACCACCATGTTTTTTCAGCAACCTTGTGACAGTCACTTGGATGTTTTGGTCGGACAGGCTCTGTTTTCGGACGGTGCGGCGGCTTTGATTGTTGGGGCCAATCCGGACCCCAAAAGTGAACGTCAACTGTTCAATATCATGTCTGTTAGAGGGACTATTATCCCAAACTCGGAGCATGGAGTTGTGGCACATTTGCGTGAGATGGGGTTTGAGTATTACCTATCATCAGAAGTTCCAAAGTTGGTTGGTGGGAAAATCGAAGAGTGTTTGAGTAAAGGGTTTGAGGGCATTGGGGTTAATGGTGATTGGAACTCGTTGTTCTTTAGCGTTCATCCTGGGGGTCCTGCAATTCTGGACAAGGTTGAAGAAGAGCTGGGTTTGAAGGAGGGGAAGCTGAAGGCAACAAGGCATGTGCTGAGTGAGTTTGGGAATATGGGAGCTCCATCTGTGCTTTTTATTTTGGATGAGATAAGGAAGAAGTCAATGGAGGAAGCAAAAGCCACAACTGGTGAAGGTTTGGTATTGAAAAACATATCTGATGGAGCAAGCTTTTCTTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005856 GO:0005884 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009579 GO:0012505 GO:0015031 GO:0015629 GO:0015833 GO:0019899 GO:0030276 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

375

Amino Acids

41.04

Weight (kDa)

6.12

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chal_sti_synt_N	PF00195	3 - 223	9.3e-101	Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C	PF02797	236 - 361	4e-39	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11710 AT5G11710 AT5G11710
fragaria_vesca	FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320
malus_domestica	MD08G1074500.v1.1 MD15G1062200.v1.1
prunus_persica	Prupe.1G416200_v2.0.a1 Prupe.1G416200_v2.0.a1 Prupe.1G416200_v2.0.a1
pyrus_communis	pycom08g06150 pycom15g05880
rosa_chinensis	RchiOBHm_Chr6g0310371
rosa_laevigata	RLG00000010488
rosa_multiflora	Rmu_sc0002348.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158610
rosa_rugosa	Rorug06G0379400 Rorug06G0379400 Rorug06G0379500
rosa_samantha	Rh6AG493600 Rh6BG503300 Rh6CG508300 Rh6DG494400
rosa_wichuraiana	Rw6G042950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	390
AccIII	TCCGGA	1 cut(s)	667
AciI	CCGC	3 cut(s)	311, 641, 644
AcoI	YGGCCR	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	980
AfiI	CCNNNNNNNGG	2 cut(s)	299, 733
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	8 cut(s)	109, 154, 319, 351, 697, 929, 946, 1090
AjiI	CACGTC	2 cut(s)	266, 514
AjnI	CCWGG	1 cut(s)	898
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
Alw21I	GWGCWC	3 cut(s)	129, 538, 1006
Alw26I	GTCTC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	625
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	5 cut(s)	321, 337, 430, 516, 660
ApeKI	GCWGC	2 cut(s)	237, 474
AsiGI	ACCGGT	1 cut(s)	450
AspS9I	GGNCC	5 cut(s)	289, 337, 660, 670, 905
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	5 cut(s)	106, 349, 556, 878, 1085
AvaII	GGWCC	3 cut(s)	289, 670, 905
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	2 cut(s)	538, 1006
BauI	CACGAG	2 cut(s)	284, 537
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	3 cut(s)	129, 538, 1006
BbvI	GCAGC	2 cut(s)	249, 461
BccI	CCATC	6 cut(s)	169, 332, 448, 760, 1015, 1097
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	900
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	5 cut(s)	238, 312, 475, 642, 645
BlsI	GCNGC	5 cut(s)	239, 313, 476, 643, 646
Bme1390I	CCNGG	2 cut(s)	399, 900
Bme18I	GGWCC	3 cut(s)	289, 670, 905
BmgBI	CACGTC	2 cut(s)	266, 514
BmgT120I	GGNCC	5 cut(s)	289, 337, 660, 670, 905
BmiI	GGNNCC	8 cut(s)	30, 249, 291, 338, 403, 661, 672, 906
BmrFI	CCNGG	2 cut(s)	399, 900
BoxI	GACNNNNGTC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	427, 507, 899
BsaWI	WCCGGW	2 cut(s)	450, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 733
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	2 cut(s)	65, 1075
BseAI	TCCGGA	1 cut(s)	667
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	3 cut(s)	427, 507, 899
BseGI	GGATG	3 cut(s)	610, 895, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	299, 733
BseMII	CTCAG	2 cut(s)	23, 971
BseNI	ACTGG	2 cut(s)	65, 1075
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	249, 461
BseYI	CCCAGC	1 cut(s)	937
BsgI	GTGCAG	1 cut(s)	358
BshFI	GGCC	5 cut(s)	323, 339, 432, 518, 662
BshNI	GGYRCC	1 cut(s)	401
BshTI	ACCGGT	1 cut(s)	450
BsiHKAI	GWGCWC	3 cut(s)	129, 538, 1006
BsiSI	CCGG	4 cut(s)	399, 451, 531, 668
BslFI	GGGAC	4 cut(s)	67, 275, 502, 730
BslI	CCNNNNNNNGG	2 cut(s)	299, 733
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	4 cut(s)	67, 275, 502, 730
BsnI	GGCC	5 cut(s)	323, 339, 432, 518, 662
Bsp1286I	GDGCHC	3 cut(s)	129, 538, 1006
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	3 cut(s)	459, 546, 561
BspACI	CCGC	3 cut(s)	311, 641, 644
BspANI	GGCC	5 cut(s)	323, 339, 432, 518, 662
BspCNI	CTCAG	2 cut(s)	22, 972
BspEI	TCCGGA	1 cut(s)	667
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	8 cut(s)	30, 249, 291, 338, 403, 661, 672, 906
BspQI	GCTCTTC	1 cut(s)	927
BspT107I	GGYRCC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	65, 1075
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	427, 507, 899
BssMI	GATC	3 cut(s)	459, 546, 561
BssSI	CACGAG	2 cut(s)	284, 537
BssT1I	CCWWGG	1 cut(s)	507
Bst2BI	CACGAG	2 cut(s)	284, 537
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	4 cut(s)	493, 596, 638, 693
Bst6I	CTCTTC	3 cut(s)	201, 819, 927
BstC8I	GCNNGC	2 cut(s)	125, 1111
BstDEI	CTNAG	2 cut(s)	9, 980
BstF5I	GGATG	3 cut(s)	610, 895, 1033
BstKTI	GATC	3 cut(s)	462, 549, 564
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	459, 546, 561
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 320, 421
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	2 cut(s)	397, 977
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	397, 898
BstV1I	GCAGC	2 cut(s)	249, 461
BstV2I	GAAGAC	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	514
BsuRI	GGCC	5 cut(s)	323, 339, 432, 518, 662
BtrI	CACGTC	2 cut(s)	266, 514
BtsCI	GGATG	3 cut(s)	610, 895, 1033
Cac8I	GCNNGC	2 cut(s)	125, 1111
CaiI	CAGNNNCTG	1 cut(s)	625
CciI	TCATGA	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	5 cut(s)	289, 337, 660, 670, 905
CseI	GACGC	2 cut(s)	269, 376
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	6 cut(s)	394, 457, 571, 703, 740, 974
DdeI	CTNAG	2 cut(s)	9, 980
DpnI	GATC	3 cut(s)	461, 548, 563
DpnII	GATC	3 cut(s)	459, 546, 561
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	3 cut(s)	201, 819, 927
EarI	CTCTTC	3 cut(s)	201, 819, 927
Ecl136II	GAGCTC	2 cut(s)	536, 1004
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	2 cut(s)	538, 1006
Eco32I	GATATC	1 cut(s)	191
Eco47I	GGWCC	3 cut(s)	289, 670, 905
Eco53kI	GAGCTC	2 cut(s)	536, 1004
Eco57I	CTGAAG	1 cut(s)	980
EcoICRI	GAGCTC	2 cut(s)	536, 1004
EcoO109I	RGGNCCY	2 cut(s)	289, 905
EcoRII	CCWGG	1 cut(s)	898
EcoRV	GATATC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	538, 1006
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	6 cut(s)	397, 460, 574, 706, 743, 977
FalI	AAGNNNNNCTT	1 cut(s)	1102
FaqI	GGGAC	4 cut(s)	67, 275, 502, 730
FatI	CATG	6 cut(s)	393, 456, 570, 702, 739, 973
FauNDI	CATATG	2 cut(s)	161, 233
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	238, 312, 475, 642, 645
FokI	GGATG	3 cut(s)	617, 882, 1040
FriOI	GRGCYC	2 cut(s)	538, 1006
Fsp4HI	GCNGC	5 cut(s)	238, 312, 475, 642, 645
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	5 cut(s)	238, 312, 475, 642, 645
GsaI	CCCAGC	1 cut(s)	941
HaeIII	GGCC	5 cut(s)	323, 339, 432, 518, 662
HapII	CCGG	4 cut(s)	399, 451, 531, 668
HgaI	GACGC	2 cut(s)	269, 376
Hin1II	CATG	6 cut(s)	397, 460, 574, 706, 743, 977
HincII	GTYRAC	2 cut(s)	391, 689
HindII	GTYRAC	2 cut(s)	391, 689
HindIII	AAGCTT	1 cut(s)	1111
HinfI	GANTC	4 cut(s)	5, 198, 211, 280
HpaII	CCGG	4 cut(s)	399, 451, 531, 668
HphI	GGTGA	5 cut(s)	106, 349, 556, 878, 1085
Hpy166II	GTNNAC	3 cut(s)	391, 683, 689
Hpy188I	TCNGA	7 cut(s)	329, 546, 617, 634, 736, 793, 1102
Hpy188III	TCNNGA	6 cut(s)	95, 269, 284, 457, 668, 917
Hpy8I	GTNNAC	3 cut(s)	391, 683, 689
Hpy99I	CGWCG	2 cut(s)	263, 392
HpyAV	CCTTC	4 cut(s)	313, 940, 955, 1070
HpyCH4III	ACNGT	4 cut(s)	493, 596, 638, 693
HpyCH4IV	ACGT	3 cut(s)	265, 513, 685
HpyCH4V	TGCA	4 cut(s)	59, 237, 375, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 320, 421
HpyF3I	CTNAG	2 cut(s)	9, 980
HpySE526I	ACGT	3 cut(s)	265, 513, 685
Hsp92II	CATG	6 cut(s)	397, 460, 574, 706, 743, 977
Kpn2I	TCCGGA	1 cut(s)	667
Kzo9I	GATC	3 cut(s)	459, 546, 561
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	7 cut(s)	253, 429, 533, 736, 1001, 1009, 1106
Lsp1109I	GCAGC	2 cut(s)	249, 461
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	265, 513, 685
MaeIII	GTNAC	5 cut(s)	74, 112, 199, 590, 596
MalI	GATC	3 cut(s)	461, 548, 563
MboI	GATC	3 cut(s)	459, 546, 561
MboII	GAAGA	8 cut(s)	98, 218, 361, 836, 941, 944, 1051, 1110
MhlI	GDGCHC	3 cut(s)	129, 538, 1006
MluCI	AATT	2 cut(s)	137, 912
MlyI	GAGTC	2 cut(s)	14, 207
MmeI	TCCRAC	1 cut(s)	595
MnlI	CCTC	9 cut(s)	262, 280, 365, 374, 437, 707, 841, 943, 1045
MroI	TCCGGA	1 cut(s)	667
MseI	TTAA	2 cut(s)	140, 861
MslI	CAYNNNNRTG	3 cut(s)	569, 603, 759
MspI	CCGG	4 cut(s)	399, 451, 531, 668
MspR9I	CCNGG	2 cut(s)	399, 900
MvaI	CCWGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	3 cut(s)	20, 320, 421
NciI	CCSGG	1 cut(s)	399
NdeI	CATATG	2 cut(s)	161, 233
NdeII	GATC	3 cut(s)	459, 546, 561
NlaIII	CATG	6 cut(s)	397, 460, 574, 706, 743, 977
NlaIV	GGNNCC	8 cut(s)	30, 249, 291, 338, 403, 661, 672, 906
NmeAIII	GCCGAG	2 cut(s)	408, 544
NmuCI	GTSAC	4 cut(s)	112, 199, 590, 596
NspI	RCATGY	2 cut(s)	397, 977
PagI	TCATGA	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	927
PfeI	GAWTC	2 cut(s)	211, 280
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	5 cut(s)	239, 313, 476, 643, 646
PleI	GAGTC	2 cut(s)	13, 206
PpsI	GAGTC	2 cut(s)	13, 206
PpuMI	RGGWCCY	2 cut(s)	289, 905
PshAI	GACNNNNGTC	1 cut(s)	264
Psp124BI	GAGCTC	2 cut(s)	538, 1006
Psp5II	RGGWCCY	2 cut(s)	289, 905
Psp6I	CCWGG	1 cut(s)	898
PspFI	CCCAGC	1 cut(s)	937
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	8 cut(s)	30, 249, 291, 338, 403, 661, 672, 906
PspPI	GGNCC	5 cut(s)	289, 337, 660, 670, 905
PspPPI	RGGWCCY	2 cut(s)	289, 905
PstNI	CAGNNNCTG	1 cut(s)	625
RseI	CAYNNNNRTG	3 cut(s)	569, 603, 759
SacI	GAGCTC	2 cut(s)	538, 1006
SalI	GTCGAC	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	2 cut(s)	140, 861
SatI	GCNGC	5 cut(s)	238, 312, 475, 642, 645
Sau3AI	GATC	3 cut(s)	459, 546, 561
Sau96I	GGNCC	5 cut(s)	289, 337, 660, 670, 905
SchI	GAGTC	2 cut(s)	14, 207
ScrFI	CCNGG	2 cut(s)	399, 900
SduI	GDGCHC	3 cut(s)	129, 538, 1006
SinI	GGWCC	3 cut(s)	289, 670, 905
SmiMI	CAYNNNNRTG	3 cut(s)	569, 603, 759
Sse9I	AATT	2 cut(s)	137, 912
SsiI	CCGC	3 cut(s)	311, 641, 644
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	2 cut(s)	538, 1006
StyD4I	CCNGG	2 cut(s)	397, 898
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	493, 596, 638, 693
TaiI	ACGT	3 cut(s)	268, 516, 688
TaqI	TCGA	4 cut(s)	173, 258, 390, 822
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	137, 912
TauI	GCSGC	3 cut(s)	314, 644, 647
TfiI	GAWTC	2 cut(s)	211, 280
Tru1I	TTAA	2 cut(s)	140, 861
Tru9I	TTAA	2 cut(s)	140, 861
TseFI	GTSAC	4 cut(s)	112, 199, 590, 596
TseI	GCWGC	2 cut(s)	237, 474
Tsp45I	GTSAC	4 cut(s)	112, 199, 590, 596
TspDTI	ATGAA	2 cut(s)	445, 884
TspGWI	ACGGA	1 cut(s)	514
VpaK11BI	GGWCC	3 cut(s)	289, 670, 905
XceI	RCATGY	2 cut(s)	397, 977
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.