RchiOBHm_Chr6g0310371

Clathrin interactor EPSIN

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
67752556 .. 67757053
4498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27910

Sequence Viewer

Length: 1710 bp
ATGGATTTCATGAAGGTGTTCGATCAAACTGTCCGGGAAATAAAGAGGGAGGTGAATCTGAAGGTGTTGAAGGTTCCGGAGATGGAACAGAAGGTATTGGATGCAACGGATAATGAACCTTGGGGTCCTCATGGCTCTGCATTAGCAGAGATCGCACAGGCCACTAAGAAATTTTCGGAATGTCAGATGGTTATGAATGTTTTATGGACAAGATTGAGTGAGACAGGCAAGGACTGGCGTCTTGTCTATAAGTCATTGGCTGTCATAGAGTATCTGGTGTCACATGGATCGGAACGTGCTGTTGATGATATTATAGAACATACTTTCCAAATCTCATCACTCTCAAGTTTTGAATATGTTGAGCCAAGTGGGAAGGATATGGGTATAAATGTGAGGAAGAAGGCTGAAACCATTGTGGCCCTTTTGAATAATAAAGATAAAATACAAGAAGTTAGAAACAAAGCTGCTGCAAACCAGGACAAGTACTTTGGACTTTCATCTACTGGGATAACATACAAGTCAGGTTCAGCGACTTCGTCCTCTTATAGTAGTGGCAGCTATCAAAGTAGCGATCGCTATGGAGGTTCAAGTGGTGTAGGATCTGGCGATAGGTTCAAGGATAACTATAAGGACAGAGACCAATATGATGAAGACAAGTTTGAGAAGAAAACATCTAGTAGGTCACGCCGTGGCAGCAGAAAGGATCAGGATAATGTTTCATCCAGTGGTAAAAAGTCATCATATAAGACAAATGACTCTGATAAGTACAGTTCAAATCCCAGTCAGACCGCAAGTGTACTTTCGGATGATTATGAGGATGATTTTGATCCACGAGGGACTTCTACTACTAAGGCTGCTGCTGGAAGCTTAAACCAAGTGGATCTGTTTGGACAAAGTTTGATTGGTGATCTCATGGATGCTCCAGCATCTGTTCCCGAAGAGGTTGGTGATCTCATGAATAGTGGTTCATCAGAGGTTGATCTGTTTGCAGATGCAGCTTTTGTATCAGCACCACCACAGGCAGAAACGGAAGCATTTGCAGATGCAACTTTTGTATCAGCACCTCCCCAGAAAGCAACTGGAGCAAGTTCTCATACTCAGAATGCCGTTGATCTATTTGCTTCCCAACCAACCATTTCTCAGTCGGCTTCTTCACCGGTTGACCTCTTTGCGGCCCCTGTTCCAGTTATGCAGCCAGAAACCAAGTCCACAAGTCCTGCACCGACAAACACCAACATTGTTGATCCCTTTGCTGCCGTTCCACTTAACAGTTTTGATGGATCTGATTTCTTGGGGGGATTCACCTCTCACTCTGGTTCAACATTTTCAGAACCTTCCCAAAGTTCTGCCAATGATACCAGCCACAGTAATTTGGATAGAAAATCTTCAGCTGACTCAAAGACACCACCCAAGAAGGATAGTTTCCAGGTGAAATCTGGCATTTGGGCTGATTCACTTAGCCGTGGACTGATTGATCTTAATATAACTGGTCCCAAGAAGGTGAATCTGGCGGATGTGGGGATTGTGGGTGGATTGAGTGACGGAGCAGATGAAAAGGAGAAAGGACCACCAACTTCTTTTTACATGGGTAGAGCAATGGGATCAGGGACGGGCCTCGGAAGATCTGGATTACAGGGAGCTGGAGATGATGACTTCTTCTCGAGTCTCGGTAGCGGTCAACAGTATTCATATGGTGGTTTTCAAAAGTAG

Protein Analysis

569

Amino Acids

60.94

Weight (kDa)

4.93

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 27 - 147 4.3e-43 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 4 cut(s) 789, 1172, 1511, 1674
AclWI GGATC 8 cut(s) 295, 607, 711, 821, 888, 1238, 1288, 1609
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 80, 1371
AcyI GRCGYC 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 3 cut(s) 485, 767, 798
AfiI CCNNNNNNNGG 1 cut(s) 1171
AgeI ACCGGT 1 cut(s) 1156
AgsI TTSAA 8 cut(s) 70, 353, 427, 588, 616, 774, 1320, 1703
AjnI CCWGG 2 cut(s) 474, 1425
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 6 cut(s) 464, 558, 867, 998, 1391, 1640
AluI AGCT 6 cut(s) 464, 558, 867, 998, 1391, 1640
Alw26I GTCTC 3 cut(s) 215, 630, 1670
AlwI GGATC 8 cut(s) 295, 607, 711, 821, 888, 1238, 1288, 1609
AlwNI CAGNNNCTG 1 cut(s) 929
Ama87I CYCGRG 1 cut(s) 1660
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 4 cut(s) 159, 417, 1173, 1612
ApeKI GCWGC 9 cut(s) 464, 467, 555, 693, 854, 857, 995, 1192, 1253
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AsiGI ACCGGT 1 cut(s) 1156
AsiSI GCGATCGC 1 cut(s) 574
Asp700I GAANNNNTTC 2 cut(s) 17, 1384
AspS9I GGNCC 6 cut(s) 125, 418, 1174, 1490, 1565, 1612
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 7 cut(s) 64, 917, 959, 1146, 1294, 1441, 1513
AvaI CYCGRG 1 cut(s) 1660
AvaII GGWCC 3 cut(s) 125, 1490, 1565
BaeI ACNNNNGTAYC 2 cut(s) 1038, 1071
BauI CACGAG 1 cut(s) 831
BbsI GAAGAC 1 cut(s) 657
BbvI GCAGC 9 cut(s) 451, 454, 567, 705, 841, 844, 1007, 1204, 1240
BccI CCATC 3 cut(s) 76, 181, 1271
BceAI ACGGC 4 cut(s) 672, 1091, 1241, 1446
BciT130I CCWGG 2 cut(s) 476, 1427
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 3 cut(s) 215, 630, 1670
BfaI CTAG 1 cut(s) 675
BglII AGATCT 1 cut(s) 1622
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 3 cut(s) 35, 476, 1427
Bme18I GGWCC 3 cut(s) 125, 1490, 1565
BmeT110I CYCGRG 1 cut(s) 1660
BmgT120I GGNCC 6 cut(s) 125, 418, 1174, 1490, 1565, 1612
BmiI GGNNCC 4 cut(s) 75, 126, 1176, 1492
BmrFI CCNGG 3 cut(s) 35, 476, 1427
BmrI ACTGGG 2 cut(s) 513, 774
BmsI GCATC 5 cut(s) 91, 907, 935, 982, 1033
BmuI ACTGGG 2 cut(s) 513, 774
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 657
BpmI CTGGAG 3 cut(s) 906, 1101, 1662
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 825
BsaHI GRCGYC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 4 cut(s) 119, 688, 1462, 1615
BsaWI WCCGGW 2 cut(s) 76, 1156
Bsc4I CCNNNNNNNGG 1 cut(s) 1171
Bse118I RCCGGY 1 cut(s) 1156
Bse1I ACTGG 7 cut(s) 239, 508, 723, 780, 1084, 1184, 1492
Bse3DI GCAATG 1 cut(s) 1602
Bse8I GATNNNNATC 1 cut(s) 825
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 2 cut(s) 476, 1427
BseDI CCNNGG 4 cut(s) 119, 688, 1462, 1615
BseGI GGATG 6 cut(s) 106, 719, 811, 823, 922, 1519
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 1 cut(s) 1171
BseMI GCAATG 1 cut(s) 1602
BseMII CTCAG 2 cut(s) 1112, 1154
BseNI ACTGG 7 cut(s) 239, 508, 723, 780, 1084, 1184, 1492
BseXI GCAGC 9 cut(s) 451, 454, 567, 705, 841, 844, 1007, 1204, 1240
BsgI GTGCAG 1 cut(s) 1203
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 4 cut(s) 161, 419, 1175, 1614
BshTI ACCGGT 1 cut(s) 1156
BsiEI CGRYCG 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 1660
BsiSI CCGG 3 cut(s) 34, 77, 1157
BslFI GGGAC 3 cut(s) 850, 1476, 1621
BslI CCNNNNNNNGG 1 cut(s) 1171
BsmAI GTCTC 3 cut(s) 215, 630, 1670
BsmFI GGGAC 3 cut(s) 850, 1476, 1621
BsmI GAATGC 1 cut(s) 1108
BsnI GGCC 4 cut(s) 161, 419, 1175, 1614
Bso31I GGTCTC 1 cut(s) 630
BsoBI CYCGRG 1 cut(s) 1660
Bsp13I TCCGGA 1 cut(s) 76
BspACI CCGC 4 cut(s) 789, 1172, 1511, 1674
BspANI GGCC 4 cut(s) 161, 419, 1175, 1614
BspCNI CTCAG 2 cut(s) 1111, 1153
BspEI TCCGGA 1 cut(s) 76
BspHI TCATGA 2 cut(s) 9, 954
BspLI GGNNCC 4 cut(s) 75, 126, 1176, 1492
BspPI GGATC 8 cut(s) 295, 607, 711, 821, 888, 1238, 1288, 1609
BspTNI GGTCTC 1 cut(s) 630
BsrDI GCAATG 1 cut(s) 1602
BsrFI RCCGGY 1 cut(s) 1156
BsrI ACTGG 7 cut(s) 239, 508, 723, 780, 1084, 1184, 1492
BssAI RCCGGY 1 cut(s) 1156
BssECI CCNNGG 4 cut(s) 119, 688, 1462, 1615
BssNI GRCGYC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 476, 1427
Bst4CI ACNGT 5 cut(s) 31, 770, 1271, 1367, 1683
Bst6I CTCTTC 1 cut(s) 933
BstACI GRCGYC 1 cut(s) 238
BstDEI CTNAG 5 cut(s) 165, 849, 1098, 1140, 1457
BstDSI CCRYGG 2 cut(s) 688, 1462
BstF5I GGATG 6 cut(s) 106, 719, 811, 823, 922, 1519
BstMAI GTCTC 3 cut(s) 215, 630, 1670
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 4 cut(s) 152, 693, 995, 1082
BstNI CCWGG 2 cut(s) 476, 1427
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 3 cut(s) 33, 474, 1425
BstV1I GCAGC 9 cut(s) 451, 454, 567, 705, 841, 844, 1007, 1204, 1240
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 4 cut(s) 599, 880, 1280, 1622
BstYI RGATCY 4 cut(s) 599, 880, 1280, 1622
BsuRI GGCC 4 cut(s) 161, 419, 1175, 1614
BtgI CCRYGG 2 cut(s) 688, 1462
BtsCI GGATG 6 cut(s) 106, 719, 811, 823, 922, 1519
BtsIMutI CAGTG 1 cut(s) 730
CaiI CAGNNNCTG 1 cut(s) 929
CciI TCATGA 2 cut(s) 9, 954
Cfr10I RCCGGY 1 cut(s) 1156
Cfr13I GGNCC 6 cut(s) 125, 418, 1174, 1490, 1565, 1612
CseI GACGC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 484, 766, 797
CspAI ACCGGT 1 cut(s) 1156
CviAII CATG 6 cut(s) 10, 131, 284, 913, 955, 1585
CviQI GTAC 3 cut(s) 484, 766, 797
DdeI CTNAG 5 cut(s) 165, 849, 1098, 1140, 1457
DraIII CACNNNGTG 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 933
EarI CTCTTC 1 cut(s) 933
EciI GGCGGA 1 cut(s) 1526
Eco130I CCWWGG 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 3 cut(s) 125, 1490, 1565
Eco57I CTGAAG 2 cut(s) 80, 1371
Eco88I CYCGRG 1 cut(s) 1660
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 474, 1425
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 6 cut(s) 13, 134, 287, 916, 958, 1588
FaqI GGGAC 3 cut(s) 850, 1476, 1621
FatI CATG 6 cut(s) 9, 130, 283, 912, 954, 1584
FauNDI CATATG 1 cut(s) 1690
FokI GGATG 6 cut(s) 113, 706, 818, 830, 929, 1526
FspBI CTAG 1 cut(s) 675
GsuI CTGGAG 3 cut(s) 906, 1101, 1662
HaeIII GGCC 4 cut(s) 161, 419, 1175, 1614
HapII CCGG 3 cut(s) 34, 77, 1157
HgaI GACGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 6 cut(s) 13, 134, 287, 916, 958, 1588
HincII GTYRAC 2 cut(s) 1162, 1679
HindII GTYRAC 2 cut(s) 1162, 1679
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 7 cut(s) 55, 755, 1299, 1394, 1451, 1504, 1663
HpaII CCGG 3 cut(s) 34, 77, 1157
HphI GGTGA 7 cut(s) 64, 917, 959, 1146, 1294, 1441, 1513
Hpy166II GTNNAC 5 cut(s) 797, 1162, 1209, 1466, 1679
Hpy188III TCNNGA 7 cut(s) 10, 77, 707, 935, 955, 1626, 1660
Hpy8I GTNNAC 5 cut(s) 797, 1162, 1209, 1466, 1679
HpyAV CCTTC 9 cut(s) 7, 55, 64, 85, 367, 394, 1344, 1408, 1492
HpyCH4III ACNGT 5 cut(s) 31, 770, 1271, 1367, 1683
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 9 cut(s) 104, 140, 470, 989, 995, 1040, 1046, 1192, 1220
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 693, 995, 1082
HpyF3I CTNAG 5 cut(s) 165, 849, 1098, 1140, 1457
HpySE526I ACGT 1 cut(s) 295
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 6 cut(s) 13, 134, 287, 916, 958, 1588
Kpn2I TCCGGA 1 cut(s) 76
LmnI GCTCC 4 cut(s) 925, 1082, 1544, 1637
Lsp1109I GCAGC 9 cut(s) 451, 454, 567, 705, 841, 844, 1007, 1204, 1240
LweI GCATC 5 cut(s) 91, 907, 935, 982, 1033
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 279, 681, 1538
MboII GAAGA 8 cut(s) 409, 662, 676, 950, 1143, 1377, 1632, 1648
MflI RGATCY 4 cut(s) 599, 880, 1280, 1622
MluCI AATT 2 cut(s) 170, 1369
MlyI GAGTC 3 cut(s) 749, 1388, 1672
MroI TCCGGA 1 cut(s) 76
MroXI GAANNNNTTC 2 cut(s) 17, 1384
MseI TTAA 3 cut(s) 869, 1266, 1479
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 1391
MspI CCGG 3 cut(s) 34, 77, 1157
MspR9I CCNGG 3 cut(s) 35, 476, 1427
Mva1269I GAATGC 1 cut(s) 1108
MvaI CCWGG 2 cut(s) 476, 1427
MwoI GCNNNNNNNGC 4 cut(s) 152, 693, 995, 1082
NciI CCSGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 1690
NlaIII CATG 6 cut(s) 13, 134, 287, 916, 958, 1588
NlaIV GGNNCC 4 cut(s) 75, 126, 1176, 1492
NmuCI GTSAC 3 cut(s) 279, 681, 1538
PaeR7I CTCGAG 1 cut(s) 1660
PagI TCATGA 2 cut(s) 9, 954
PctI GAATGC 1 cut(s) 1108
PdmI GAANNNNTTC 2 cut(s) 17, 1384
PfeI GAWTC 4 cut(s) 55, 1299, 1451, 1504
PflFI GACNNNGTC 1 cut(s) 535
PfoI TCCNGGA 1 cut(s) 33
PinAI ACCGGT 1 cut(s) 1156
Ple19I CGATCG 1 cut(s) 574
PleI GAGTC 3 cut(s) 749, 1388, 1671
PpsI GAGTC 3 cut(s) 749, 1388, 1671
PpuMI RGGWCCY 1 cut(s) 125
PshAI GACNNNNGTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 474, 1425
PspGI CCWGG 2 cut(s) 474, 1425
PspN4I GGNNCC 4 cut(s) 75, 126, 1176, 1492
PspPI GGNCC 6 cut(s) 125, 418, 1174, 1490, 1565, 1612
PspPPI RGGWCCY 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 4 cut(s) 599, 880, 1280, 1622
PsyI GACNNNGTC 1 cut(s) 535
PvuI CGATCG 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 1391
RgaI GCGATCGC 1 cut(s) 574
RsaI GTAC 3 cut(s) 485, 767, 798
RsaNI GTAC 3 cut(s) 484, 766, 797
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 3 cut(s) 869, 1266, 1479
Sau96I GGNCC 6 cut(s) 125, 418, 1174, 1490, 1565, 1612
ScaI AGTACT 1 cut(s) 485
SchI GAGTC 3 cut(s) 749, 1388, 1672
ScrFI CCNGG 3 cut(s) 35, 476, 1427
SfaAI GCGATCGC 1 cut(s) 574
SfaNI GCATC 5 cut(s) 91, 907, 935, 982, 1033
Sfr274I CTCGAG 1 cut(s) 1660
SgfI GCGATCGC 1 cut(s) 574
SinI GGWCC 3 cut(s) 125, 1490, 1565
SlaI CTCGAG 1 cut(s) 1660
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 343, 1660
SmoI CTYRAG 2 cut(s) 343, 1660
Sse9I AATT 2 cut(s) 170, 1369
SsiI CCGC 4 cut(s) 789, 1172, 1511, 1674
SspMI CTAG 1 cut(s) 675
StyD4I CCNGG 3 cut(s) 33, 474, 1425
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 5 cut(s) 31, 770, 1271, 1367, 1683
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 21, 1661
TasI AATT 2 cut(s) 170, 1369
TatI WGTACW 3 cut(s) 483, 765, 796
TauI GCSGC 1 cut(s) 1175
TfiI GAWTC 4 cut(s) 55, 1299, 1451, 1504
Tru1I TTAA 3 cut(s) 869, 1266, 1479
Tru9I TTAA 3 cut(s) 869, 1266, 1479
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 3 cut(s) 279, 681, 1538
TseI GCWGC 9 cut(s) 464, 467, 555, 693, 854, 857, 995, 1192, 1253
Tsp45I GTSAC 3 cut(s) 279, 681, 1538
TspGWI ACGGA 3 cut(s) 122, 1043, 1557
TspRI CASTG 1 cut(s) 730
Tth111I GACNNNGTC 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 125, 1490, 1565
XapI RAATTY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 2 cut(s) 1076, 1433
XhoI CTCGAG 1 cut(s) 1660
XmnI GAANNNNTTC 2 cut(s) 17, 1384
XspI CTAG 1 cut(s) 675
ZrmI AGTACT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.