pycom08g06150

Clathrin interactor EPSIN

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
4716242 .. 4720240
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06150.4

Sequence Viewer

Length: 1674 bp
ATGGAGCAGAAGGTATTGGATGCAACAGATAGTGAACCTTGGGGTCCTCATGGCTCTGCATTGGCAGAGATTGCACAGGCCACTAAAAAATTTTCGGAATGTCAGATGGTTATGAGTGTTTTATGGACAAGACTAAGTGAGACGGGAAAAGACTGGCGTCATGTTTATAAGGCATTGGCTGTCATAGAATATTTGGTGTCACATGGATCTGAACGTGCTGTTGATGACATTATAGAACATACTTTCCAAATCTCGTCACTCTCAAGCTTTGAATATGTTGAGCCAAGTGGGAAAGATAATGGAATAAATGTGAGAAAGAAGGCGGAAAACATAGTGGCCCTTCTGAATAATAAAGATAAAATACAAGAAGTTAGAAACAAAGCTGCTGCAAATCGTGACAAGTACTTTGGACTTTCATCTACTGGGATAACATATAAGTCAGGTTCAGCAACTTCATCCTCGTATAGTAATAACAGCTTTCAGAGTAGTGACCGCTATGGAGGTCTAGGTGGTACAGGAACTGCTGGTGATAGTTTCAGGGATAGCTATAGAGACAGACATGAAGAAGACAAGACTGAGAAGTTCAGCTCTAGCAGGTCTCGCCGTGGGGCTACAAGTGAGAATCGAGAGAGCTCTTCAAAGAAGGGCTCAACACGAAGCAGGAGAGGTCAGGATGATATATCATCTAGTGAGTCAAAGTCATCAAATAAATCAAATGAAGCTGATACATACAGTTCAATTCACACGCAAAGCGCAAGTATTGCTGATGATGATGACGATTTTGATCCGCGAGGGACTTCTACTACTAAGGCTGCTGTTGCAAGCTCGAACCAAGTGGATCTATTTGGACAAAATTTGATGGACGACTTCGTAGATGTTCCAGCATCTGTTCCTGAAGAAAAGCCTGTTATGAACAGCAGTTCATCGGACGTTGATCTGTTTGCAGATGCAGATTTTGTGTCAGCAGCACCACCCCAGGCAGCATCTGGAGCATTTGCAGACTCAACTTTTGTATCCGCACCACCCAAGACAGCAACTGGAGCAAGTTCTCAAACTCAGAATGGCGTTGATCTGTTTGCTTCTCAACCAACCCTATCCCCACCGGCTTCTTCAACAGTTGATCTTTTTGCCACCCCCGATCCAGTTATGCAGCCAGAAACCAAGTCTACAAATGCTGCACCAACAAACACCAACATTGTTGATCCCTTTGCCACCGTTCCACTTAACAATTTTGATGGATCTGATATAATGGGGGCGTTCACGTCTCATTCTGATTCAGCAGCTTCAGAACCTTCCCAAAGTTCTGTCAATGATGGCAGCCACAATATTGTGGGGAAACAATCTTTAGCAGATTCGAAGACCCCACCCAAGAAGGATTTCCAGGTGAAATCTGGCATTTGGGCTGATTCACTTAGCCGTGGACTGATTGATCTTAATATATCTGGTCCCAAGAAGGTGAATCTGGCGGATGTGGGAATTGTGGGTGGATTGACTGATGGAACCGATGAAAGAGAGAAAGGGCCCCCAACTTCGTATTACATGGGAAGAGCAATGGGTTCGGGGACTGGTCTTGGAAAATCGGGGTTCCCATCTTCACAAGGAATAGGTGACGACTTCTTCTCAAGTCTCAGCAGCGGCAACCAGCAATACCAATACGGTGGATTCCAAAAGTAA

Protein Analysis

558

Amino Acids

59.23

Weight (kDa)

4.94

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 585
AccI GTMKAC 1 cut(s) 1166
AccII CGCG 1 cut(s) 790
AciI CCGC 6 cut(s) 323, 493, 788, 1017, 1466, 1635
AclWI GGATC 6 cut(s) 214, 779, 846, 1133, 1196, 1246
AcsI RAATTY 2 cut(s) 89, 853
AcuI CTGAAG 2 cut(s) 915, 1269
AcyI GRCGYC 1 cut(s) 157
AfaI GTAC 2 cut(s) 404, 514
AgsI TTSAA 4 cut(s) 272, 639, 738, 1113
AjiI CACGTC 1 cut(s) 1263
AjnI CCWGG 2 cut(s) 975, 1380
AjuI GAANNNNNNNTTGG 2 cut(s) 1361, 1393
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 9 cut(s) 267, 383, 477, 546, 588, 633, 722, 825, 1283
AluI AGCT 9 cut(s) 267, 383, 477, 546, 588, 633, 722, 825, 1283
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 5 cut(s) 134, 546, 603, 1269, 1631
AlwI GGATC 6 cut(s) 214, 779, 846, 1133, 1196, 1246
AlwNI CAGNNNCTG 4 cut(s) 521, 887, 986, 1037
AoxI GGCC 3 cut(s) 78, 336, 1520
ApaI GGGCCC 1 cut(s) 1524
ApoI RAATTY 2 cut(s) 89, 853
ArsI GACNNNNNNTTYG 4 cut(s) 389, 421, 992, 1024
Asp700I GAANNNNTTC 1 cut(s) 1376
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 5 cut(s) 44, 337, 1445, 1520, 1521
AsuHPI GGTGA 4 cut(s) 539, 1396, 1468, 1619
AsuII TTCGAA 1 cut(s) 1355
AvaII GGWCC 2 cut(s) 44, 1445
BaeGI GKGCMC 1 cut(s) 1524
BaeI ACNNNNGTAYC 2 cut(s) 996, 1029
BanII GRGCYC 3 cut(s) 635, 650, 1524
BbsI GAAGAC 2 cut(s) 573, 1364
Bbv12I GWGCWC 1 cut(s) 635
BccI CCATC 6 cut(s) 100, 853, 1229, 1307, 1490, 1597
BceAI ACGGC 2 cut(s) 588, 1401
BcgI CGANNNNNNTGC 2 cut(s) 1539, 1573
BciT130I CCWGG 2 cut(s) 977, 1382
BciVI GTATCC 1 cut(s) 1024
BcoDI GTCTC 5 cut(s) 134, 546, 603, 1269, 1631
BfaI CTAG 3 cut(s) 506, 591, 687
BfmI CTRYAG 1 cut(s) 547
BfuAI ACCTGC 1 cut(s) 585
BfuI GTATCC 1 cut(s) 1024
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 2 cut(s) 977, 1382
Bme18I GGWCC 2 cut(s) 44, 1445
BmgBI CACGTC 1 cut(s) 1263
BmgT120I GGNCC 5 cut(s) 44, 337, 1445, 1520, 1521
BmiI GGNNCC 6 cut(s) 45, 1447, 1501, 1522, 1523, 1586
BmrFI CCNGG 2 cut(s) 977, 1382
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 4 cut(s) 10, 893, 937, 992
BmuI ACTGGG 1 cut(s) 432
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 2 cut(s) 573, 1364
BpmI CTGGAG 2 cut(s) 1008, 1059
Bpu14I TTCGAA 1 cut(s) 1355
BpuEI CTTGAG 2 cut(s) 247, 1606
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 603
BsaJI CCNNGG 4 cut(s) 38, 604, 975, 1417
Bse118I RCCGGY 1 cut(s) 1102
Bse1I ACTGG 5 cut(s) 158, 427, 1042, 1142, 1570
Bse3DI GCAATG 1 cut(s) 1557
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 2 cut(s) 977, 1382
BseDI CCNNGG 4 cut(s) 38, 604, 975, 1417
BseGI GGATG 4 cut(s) 25, 455, 679, 1474
BseJI GATNNNNATC 1 cut(s) 783
BseMI GCAATG 1 cut(s) 1557
BseMII CTCAG 3 cut(s) 567, 1070, 1642
BseNI ACTGG 5 cut(s) 158, 427, 1042, 1142, 1570
BseSI GKGCMC 1 cut(s) 1524
BsgI GTGCAG 1 cut(s) 1161
Bsh1236I CGCG 1 cut(s) 790
BshFI GGCC 3 cut(s) 80, 338, 1522
BsiHKAI GWGCWC 1 cut(s) 635
BsiSI CCGG 1 cut(s) 1103
BslFI GGGAC 3 cut(s) 808, 1431, 1576
BsmAI GTCTC 5 cut(s) 134, 546, 603, 1269, 1631
BsmBI CGTCTC 2 cut(s) 134, 1269
BsmFI GGGAC 3 cut(s) 808, 1431, 1576
BsnI GGCC 3 cut(s) 80, 338, 1522
Bso31I GGTCTC 1 cut(s) 603
Bsp119I TTCGAA 1 cut(s) 1355
Bsp120I GGGCCC 1 cut(s) 1520
Bsp1286I GDGCHC 3 cut(s) 635, 650, 1524
BspACI CCGC 6 cut(s) 323, 493, 788, 1017, 1466, 1635
BspANI GGCC 3 cut(s) 80, 338, 1522
BspCNI CTCAG 3 cut(s) 568, 1069, 1641
BspFNI CGCG 1 cut(s) 790
BspLI GGNNCC 6 cut(s) 45, 1447, 1501, 1522, 1523, 1586
BspMI ACCTGC 1 cut(s) 585
BspPI GGATC 6 cut(s) 214, 779, 846, 1133, 1196, 1246
BspQI GCTCTTC 2 cut(s) 640, 1540
BspT104I TTCGAA 1 cut(s) 1355
BspTNI GGTCTC 1 cut(s) 603
BsrDI GCAATG 1 cut(s) 1557
BsrFI RCCGGY 1 cut(s) 1102
BsrI ACTGG 5 cut(s) 158, 427, 1042, 1142, 1570
BssAI RCCGGY 1 cut(s) 1102
BssECI CCNNGG 4 cut(s) 38, 604, 975, 1417
BssNI GRCGYC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 2 cut(s) 977, 1382
Bst4CI ACNGT 4 cut(s) 734, 1117, 1216, 1658
Bst6I CTCTTC 2 cut(s) 640, 1540
BstACI GRCGYC 1 cut(s) 157
BstAPI GCANNNNNTGC 2 cut(s) 71, 761
BstBI TTCGAA 1 cut(s) 1355
BstC8I GCNNGC 1 cut(s) 823
BstDEI CTNAG 6 cut(s) 134, 576, 807, 1056, 1412, 1628
BstDSI CCRYGG 2 cut(s) 604, 1417
BstF5I GGATG 4 cut(s) 25, 455, 679, 1474
BstFNI CGCG 1 cut(s) 790
BstHHI GCGC 1 cut(s) 755
BstMAI GTCTC 5 cut(s) 134, 546, 603, 1269, 1631
BstMWI GCNNNNNNNGC 6 cut(s) 71, 600, 761, 818, 989, 1040
BstNI CCWGG 2 cut(s) 977, 1382
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 2 cut(s) 975, 1380
BstSFI CTRYAG 1 cut(s) 547
BstSLI GKGCMC 1 cut(s) 1524
BstUI CGCG 1 cut(s) 790
BstV2I GAAGAC 2 cut(s) 573, 1364
BstX2I RGATCY 3 cut(s) 206, 838, 1238
BstXI CCANNNNNNTGG 1 cut(s) 1658
BstYI RGATCY 3 cut(s) 206, 838, 1238
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 3 cut(s) 80, 338, 1522
BtgI CCRYGG 2 cut(s) 604, 1417
BtrI CACGTC 1 cut(s) 1263
BtsCI GGATG 4 cut(s) 25, 455, 679, 1474
BveI ACCTGC 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 823
CaiI CAGNNNCTG 4 cut(s) 521, 887, 986, 1037
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 1 cut(s) 1102
Cfr13I GGNCC 5 cut(s) 44, 337, 1445, 1520, 1521
CseI GACGC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 403, 513
CviAII CATG 5 cut(s) 50, 161, 203, 560, 1540
CviQI GTAC 2 cut(s) 403, 513
DdeI CTNAG 6 cut(s) 134, 576, 807, 1056, 1412, 1628
Eam1104I CTCTTC 2 cut(s) 640, 1540
EarI CTCTTC 2 cut(s) 640, 1540
EciI GGCGGA 2 cut(s) 338, 1481
Ecl136II GAGCTC 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 3 cut(s) 635, 650, 1524
Eco31I GGTCTC 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 44, 1445
Eco53kI GAGCTC 1 cut(s) 633
Eco57I CTGAAG 2 cut(s) 915, 1269
EcoICRI GAGCTC 1 cut(s) 633
EcoO109I RGGNCCY 3 cut(s) 44, 1520, 1521
EcoRII CCWGG 2 cut(s) 975, 1380
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 3 cut(s) 635, 650, 1524
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 2 cut(s) 134, 1269
FaeI CATG 5 cut(s) 53, 164, 206, 563, 1543
FaqI GGGAC 3 cut(s) 808, 1431, 1576
FatI CATG 5 cut(s) 49, 160, 202, 559, 1539
FblI GTMKAC 1 cut(s) 1166
FokI GGATG 4 cut(s) 32, 442, 686, 1481
FriOI GRGCYC 3 cut(s) 635, 650, 1524
FspBI CTAG 3 cut(s) 506, 591, 687
GlaI GCGC 1 cut(s) 754
GsuI CTGGAG 2 cut(s) 1008, 1059
HaeIII GGCC 3 cut(s) 80, 338, 1522
HapII CCGG 1 cut(s) 1103
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 755
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 5 cut(s) 53, 164, 206, 563, 1543
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 8 cut(s) 622, 692, 1001, 1274, 1352, 1406, 1459, 1662
HpaII CCGG 1 cut(s) 1103
HphI GGTGA 4 cut(s) 539, 1396, 1468, 1619
Hpy166II GTNNAC 4 cut(s) 35, 1167, 1260, 1421
Hpy188III TCNNGA 5 cut(s) 395, 626, 671, 893, 987
Hpy8I GTNNAC 4 cut(s) 35, 1167, 1260, 1421
HpyAV CCTTC 7 cut(s) 4, 313, 350, 637, 1302, 1366, 1447
HpyCH4III ACNGT 4 cut(s) 734, 1117, 1216, 1658
HpyCH4IV ACGT 3 cut(s) 214, 930, 1262
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 600, 761, 818, 989, 1040
HpyF3I CTNAG 6 cut(s) 134, 576, 807, 1056, 1412, 1628
HpySE526I ACGT 3 cut(s) 214, 930, 1262
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 5 cut(s) 53, 164, 206, 563, 1543
HspAI GCGC 1 cut(s) 753
LguI GCTCTTC 2 cut(s) 640, 1540
LmnI GCTCC 3 cut(s) 4, 989, 1040
LweI GCATC 4 cut(s) 10, 893, 937, 992
MaeI CTAG 3 cut(s) 506, 591, 687
MaeII ACGT 3 cut(s) 214, 930, 1262
MaeIII GTNAC 5 cut(s) 198, 255, 395, 488, 1607
MboII GAAGA 9 cut(s) 575, 578, 627, 908, 1101, 1369, 1557, 1584, 1609
MflI RGATCY 3 cut(s) 206, 838, 1238
MhlI GDGCHC 3 cut(s) 635, 650, 1524
MluCI AATT 5 cut(s) 89, 738, 853, 1228, 1476
MlyI GAGTC 2 cut(s) 701, 995
MnlI CCTC 5 cut(s) 57, 469, 494, 659, 785
MroXI GAANNNNTTC 1 cut(s) 1376
MseI TTAA 2 cut(s) 1224, 1434
MspA1I CMGCKG 1 cut(s) 1635
MspI CCGG 1 cut(s) 1103
MspR9I CCNGG 2 cut(s) 977, 1382
MvaI CCWGG 2 cut(s) 977, 1382
MvnI CGCG 1 cut(s) 790
MwoI GCNNNNNNNGC 6 cut(s) 71, 600, 761, 818, 989, 1040
NlaIII CATG 5 cut(s) 53, 164, 206, 563, 1543
NlaIV GGNNCC 6 cut(s) 45, 1447, 1501, 1522, 1523, 1586
NmuCI GTSAC 5 cut(s) 198, 255, 395, 488, 1607
NspV TTCGAA 1 cut(s) 1355
PciSI GCTCTTC 2 cut(s) 640, 1540
PdmI GAANNNNTTC 1 cut(s) 1376
PfeI GAWTC 6 cut(s) 622, 1274, 1352, 1406, 1459, 1662
PleI GAGTC 2 cut(s) 700, 995
PpsI GAGTC 2 cut(s) 700, 995
PpuMI RGGWCCY 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 156
PsiI TTATAA 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 975, 1380
PspGI CCWGG 2 cut(s) 975, 1380
PspN4I GGNNCC 6 cut(s) 45, 1447, 1501, 1522, 1523, 1586
PspOMI GGGCCC 1 cut(s) 1520
PspPI GGNCC 5 cut(s) 44, 337, 1445, 1520, 1521
PspPPI RGGWCCY 1 cut(s) 44
PstNI CAGNNNCTG 4 cut(s) 521, 887, 986, 1037
PsuI RGATCY 3 cut(s) 206, 838, 1238
RsaI GTAC 2 cut(s) 404, 514
RsaNI GTAC 2 cut(s) 403, 513
SacI GAGCTC 1 cut(s) 635
SapI GCTCTTC 2 cut(s) 640, 1540
SaqAI TTAA 2 cut(s) 1224, 1434
Sau96I GGNCC 5 cut(s) 44, 337, 1445, 1520, 1521
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 2 cut(s) 701, 995
ScrFI CCNGG 2 cut(s) 977, 1382
SduI GDGCHC 3 cut(s) 635, 650, 1524
SfaNI GCATC 4 cut(s) 10, 893, 937, 992
SfcI CTRYAG 1 cut(s) 547
SfuI TTCGAA 1 cut(s) 1355
SinI GGWCC 2 cut(s) 44, 1445
SmlI CTYRAG 2 cut(s) 262, 1621
SmoI CTYRAG 2 cut(s) 262, 1621
Sse9I AATT 5 cut(s) 89, 738, 853, 1228, 1476
SsiI CCGC 6 cut(s) 323, 493, 788, 1017, 1466, 1635
SspI AATATT 2 cut(s) 191, 1327
SspMI CTAG 3 cut(s) 506, 591, 687
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 975, 1380
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 4 cut(s) 734, 1117, 1216, 1658
TaiI ACGT 3 cut(s) 217, 933, 1265
TaqI TCGA 3 cut(s) 625, 827, 1355
TasI AATT 5 cut(s) 89, 738, 853, 1228, 1476
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 1638
TfiI GAWTC 6 cut(s) 622, 1274, 1352, 1406, 1459, 1662
Tru1I TTAA 2 cut(s) 1224, 1434
Tru9I TTAA 2 cut(s) 1224, 1434
TseFI GTSAC 5 cut(s) 198, 255, 395, 488, 1607
Tsp45I GTSAC 5 cut(s) 198, 255, 395, 488, 1607
TspDTI ATGAA 7 cut(s) 405, 444, 576, 732, 912, 926, 1521
VpaK11BI GGWCC 2 cut(s) 44, 1445
XapI RAATTY 2 cut(s) 89, 853
XcmI CCANNNNNNNNNTGG 2 cut(s) 983, 1388
XmiI GTMKAC 1 cut(s) 1166
XmnI GAANNNNTTC 1 cut(s) 1376
XspI CTAG 3 cut(s) 506, 591, 687
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.