Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004765

Physical Location & Seq

Genomic Coordinates Forward (+)

66925089 .. 66929527

Gene Structure 4439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG508300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGTGTAGAAAGAGGGAGGTGAATCTGAAGGTGTTGAAGGTTCCGGAGATGGAACAGAAGGTATTGGATGCAACGGATAATGAACCTTGGGGTCCTCATGGCTCTGCATTGGCAGAGATCGCACAGGCCACTAAGAAATTTTCGGAATGTCAGATGGTTATGAATGTTTTATGGACAAGATTGAGTGAGACAGGCAAGGACTGGCGTCTTGTCTATAAGTCATTGGCTGTCATAGAGTATCTGGTGTCACATGGATCGGAACGTGCTGTTGATGATATTATAGAACATACTTTCCAAATCTCATCACTCTCAAGTTTTGAATATGTTGAGCCAAGTGGGAAGGATATGGGAATAAATGTGAGGAAGAAGGCTGAAACCATTGTGGCCCTTTTGAATAATAAAGATAAAATACAAGAAGTTAGAAATAAAGCTGCTGCAAACCAGGACAAGTACTTTGGACTTTCATCTACTGGGATAACATACAAGTCAGGTTCAGCGACTTCGTCCTCTTATAGTAGTGGCAGCTATCAAAGTAGCGATCGCTATGGAGGTTCAAGTGGTGTAGGATCTGGCGATAGGTTCAGGGATAACTATAAGGACAGAGACCAATATGATGAAGACAAGTTTGAGAAGAAAACCTCTAGTAGGTCACGCCGTGGCAGCAGAAAGGATCAGGATAATGTTTCATCCAGTGTTAAAAAGTCATCATATAAGACAAATGACTCTGATAAGTACAGTTCAAATCCCAGTCAGACCGCAAGTGTACTTTCAGATGATTATGAGGATGATTTTGATCCACGGGGGACTTCTACTACTAAGGCTGCTGCTGGAAGCTCAAACCAAGTGGATCTGTTTGGACAAAGTTTGATTGGTGATCTCATGGATGCTCCAGCATCTGTTCCCGAAGAGAAGCCTGGCATGAATAGTGGTTCATCAGAGGTTGATCTGTTTGCAGATGCAGCTTTTGTATCAGCACCACCACAGGCAGAAACGGAAGCATTTGCAGACGCAACTTTTGTATCAGCACCTACCCAGGCAGACACTGAAGCATTTGCAGATGCAACTTTTGTATCAGCACCACCCCAGAAAGCAACTGGAGCAAGTTCTCAAACTCAGAATGGTGTTGATCTATTTGCTTCCCAACCAACCATTTCTCAGTCGGCTTCTTCACCGGTTGACCTCTTTGCGGCCCCTGTTCCAGTTATGCAGCCAGAAACCAAGTCCACAAGTCCTGCACCGACAAACACCAACATTGTTGATCCCTTTGCTGCCGTTCCACTTAACAGTTTTGATGGATCTGATTTCTTGGGGGGATTCACCTCTCACTCTGGTTCAACATTTTCAGAACCTTCCCAAAGTTCTGCCAATGATGCCAGCCACAGTAATTTGGATAGAAAATCTTCAGCCGACTCAAAGACACCACCCAAGAAGGATGGTTTCCAGGTGAAATCTGGCATTTGGGCTGATTCACTTAGCCGTGGACTGATTGATCTTAATATAACTGGTCGTAAGTATCTCCATATCACCTGCCTTATTACTGTCCACAGCATAATGTATTTGTTTGTTTCACCTTTATGCTTCACTAGGCTGCTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005856 GO:0005884 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009579 GO:0012505 GO:0015031 GO:0015629 GO:0015833 GO:0019899 GO:0030276 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

532

Amino Acids

57.46

Weight (kDa)

5.18

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ENTH	PF01417	16 - 136	3.9e-43	ENTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11710 AT5G11710 AT5G11710
fragaria_vesca	FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320 FvH4_2g32320
malus_domestica	MD08G1074500.v1.1 MD15G1062200.v1.1
prunus_persica	Prupe.1G416200_v2.0.a1 Prupe.1G416200_v2.0.a1 Prupe.1G416200_v2.0.a1
pyrus_communis	pycom08g06150 pycom15g05880
rosa_chinensis	RchiOBHm_Chr6g0310371
rosa_laevigata	RLG00000010488
rosa_multiflora	Rmu_sc0002348.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158610
rosa_rugosa	Rorug06G0379400 Rorug06G0379400 Rorug06G0379500
rosa_samantha	Rh6AG493600 Rh6BG503300 Rh6CG508300 Rh6DG494400
rosa_wichuraiana	Rw6G042950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1535
Acc36I	ACCTGC	1 cut(s)	1535
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	2 cut(s)	756, 1187
AclWI	GGATC	7 cut(s)	262, 574, 678, 788, 855, 1253, 1303
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	3 cut(s)	47, 1065, 1386
AcyI	GRCGYC	1 cut(s)	205
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	3 cut(s)	452, 734, 765
AfiI	CCNNNNNNNGG	2 cut(s)	645, 1186
AgeI	ACCGGT	1 cut(s)	1171
AgsI	TTSAA	6 cut(s)	37, 320, 394, 555, 741, 1335
AjnI	CCWGG	4 cut(s)	441, 913, 1032, 1440
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	4 cut(s)	431, 525, 834, 962
AluI	AGCT	4 cut(s)	431, 525, 834, 962
Alw26I	GTCTC	2 cut(s)	182, 597
AlwI	GGATC	7 cut(s)	262, 574, 678, 788, 855, 1253, 1303
AlwNI	CAGNNNCTG	2 cut(s)	896, 1043
Aor13HI	TCCGGA	1 cut(s)	43
AoxI	GGCC	3 cut(s)	126, 384, 1188
ApoI	RAATTY	1 cut(s)	137
ArsI	GACNNNNNNTTYG	4 cut(s)	437, 469, 998, 1030
AsiGI	ACCGGT	1 cut(s)	1171
AsiSI	GCGATCGC	1 cut(s)	541
Asp700I	GAANNNNTTC	1 cut(s)	1399
AspS9I	GGNCC	3 cut(s)	92, 385, 1189
AsuHPI	GGTGA	7 cut(s)	31, 884, 1161, 1309, 1456, 1516, 1560
AvaII	GGWCC	1 cut(s)	92
BaeI	ACNNNNGTAYC	4 cut(s)	1002, 1035, 1053, 1086
BbsI	GAAGAC	1 cut(s)	624
BccI	CCATC	4 cut(s)	43, 148, 1286, 1427
BceAI	ACGGC	3 cut(s)	639, 1256, 1461
BciT130I	CCWGG	4 cut(s)	443, 915, 1034, 1442
BcoDI	GTCTC	2 cut(s)	182, 597
BfaI	CTAG	2 cut(s)	642, 1584
BfuAI	ACCTGC	1 cut(s)	1535
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	4 cut(s)	443, 915, 1034, 1442
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	3 cut(s)	92, 385, 1189
BmiI	GGNNCC	3 cut(s)	42, 93, 1191
BmrFI	CCNGG	4 cut(s)	443, 915, 1034, 1442
BmrI	ACTGGG	2 cut(s)	480, 741
BmsI	GCATC	6 cut(s)	58, 874, 902, 946, 1048, 1360
BmuI	ACTGGG	2 cut(s)	480, 741
BoxI	GACNNNNGTC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	624
BpmI	CTGGAG	2 cut(s)	873, 1116
BpuEI	CTTGAG	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	597
BsaJI	CCNNGG	5 cut(s)	86, 655, 797, 1032, 1477
BsaWI	WCCGGW	2 cut(s)	43, 1171
Bsc4I	CCNNNNNNNGG	2 cut(s)	645, 1186
Bse118I	RCCGGY	1 cut(s)	1171
Bse1I	ACTGG	7 cut(s)	206, 475, 690, 747, 1099, 1199, 1507
Bse8I	GATNNNNATC	1 cut(s)	792
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	4 cut(s)	443, 915, 1034, 1442
BseDI	CCNNGG	5 cut(s)	86, 655, 797, 1032, 1477
BseGI	GGATG	5 cut(s)	73, 686, 790, 889, 1438
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	2 cut(s)	645, 1186
BseMII	CTCAG	2 cut(s)	1127, 1169
BseNI	ACTGG	7 cut(s)	206, 475, 690, 747, 1099, 1199, 1507
BsgI	GTGCAG	1 cut(s)	1218
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	128, 386, 1190
BshTI	ACCGGT	1 cut(s)	1171
BsiEI	CGRYCG	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	44, 1172
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	2 cut(s)	645, 1186
BsmAI	GTCTC	2 cut(s)	182, 597
BsmFI	GGGAC	1 cut(s)	817
BsnI	GGCC	3 cut(s)	128, 386, 1190
Bso31I	GGTCTC	1 cut(s)	597
Bsp13I	TCCGGA	1 cut(s)	43
BspACI	CCGC	2 cut(s)	756, 1187
BspANI	GGCC	3 cut(s)	128, 386, 1190
BspCNI	CTCAG	2 cut(s)	1126, 1168
BspEI	TCCGGA	1 cut(s)	43
BspLI	GGNNCC	3 cut(s)	42, 93, 1191
BspMI	ACCTGC	1 cut(s)	1535
BspPI	GGATC	7 cut(s)	262, 574, 678, 788, 855, 1253, 1303
BspTNI	GGTCTC	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	1171
BsrI	ACTGG	7 cut(s)	206, 475, 690, 747, 1099, 1199, 1507
BssAI	RCCGGY	1 cut(s)	1171
BssECI	CCNNGG	5 cut(s)	86, 655, 797, 1032, 1477
BssNI	GRCGYC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	4 cut(s)	443, 915, 1034, 1442
Bst4CI	ACNGT	4 cut(s)	737, 1286, 1382, 1540
Bst6I	CTCTTC	1 cut(s)	900
BstACI	GRCGYC	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	1375
BstDEI	CTNAG	5 cut(s)	132, 816, 1113, 1155, 1472
BstDSI	CCRYGG	3 cut(s)	655, 797, 1477
BstENI	CCTNNNNNAGG	1 cut(s)	643
BstF5I	GGATG	5 cut(s)	73, 686, 790, 889, 1438
BstMAI	GTCTC	2 cut(s)	182, 597
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 660, 959, 1097, 1370
BstNI	CCWGG	4 cut(s)	443, 915, 1034, 1442
BstPAI	GACNNNNGTC	1 cut(s)	204
BstSCI	CCNGG	4 cut(s)	441, 913, 1032, 1440
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	3 cut(s)	566, 847, 1295
BstYI	RGATCY	3 cut(s)	566, 847, 1295
BsuRI	GGCC	3 cut(s)	128, 386, 1190
BtgI	CCRYGG	3 cut(s)	655, 797, 1477
BtsCI	GGATG	5 cut(s)	73, 686, 790, 889, 1438
BtsIMutI	CAGTG	2 cut(s)	697, 1041
BveI	ACCTGC	1 cut(s)	1535
Cac8I	GCNNGC	1 cut(s)	1375
CaiI	CAGNNNCTG	2 cut(s)	896, 1043
Cfr10I	RCCGGY	1 cut(s)	1171
Cfr13I	GGNCC	3 cut(s)	92, 385, 1189
CseI	GACGC	2 cut(s)	194, 1016
Csp6I	GTAC	3 cut(s)	451, 733, 764
CspAI	ACCGGT	1 cut(s)	1171
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviAII	CATG	4 cut(s)	98, 251, 880, 919
CviQI	GTAC	3 cut(s)	451, 733, 764
DdeI	CTNAG	5 cut(s)	132, 816, 1113, 1155, 1472
DraIII	CACNNNGTG	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
Eco130I	CCWWGG	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	3 cut(s)	47, 1065, 1386
EcoNI	CCTNNNNNAGG	1 cut(s)	643
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	4 cut(s)	441, 913, 1032, 1440
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	4 cut(s)	101, 254, 883, 922
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	4 cut(s)	97, 250, 879, 918
FokI	GGATG	5 cut(s)	80, 673, 797, 896, 1445
FspBI	CTAG	2 cut(s)	642, 1584
GsuI	CTGGAG	2 cut(s)	873, 1116
HaeIII	GGCC	3 cut(s)	128, 386, 1190
HapII	CCGG	2 cut(s)	44, 1172
HgaI	GACGC	2 cut(s)	194, 1016
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	4 cut(s)	101, 254, 883, 922
HincII	GTYRAC	1 cut(s)	1177
HindII	GTYRAC	1 cut(s)	1177
HinfI	GANTC	5 cut(s)	22, 722, 1314, 1409, 1466
HpaII	CCGG	2 cut(s)	44, 1172
HphI	GGTGA	7 cut(s)	31, 884, 1161, 1309, 1456, 1516, 1560
Hpy166II	GTNNAC	5 cut(s)	764, 1177, 1224, 1481, 1543
Hpy188III	TCNNGA	3 cut(s)	44, 674, 902
Hpy8I	GTNNAC	5 cut(s)	764, 1177, 1224, 1481, 1543
HpyAV	CCTTC	7 cut(s)	22, 31, 52, 334, 361, 1359, 1423
HpyCH4III	ACNGT	4 cut(s)	737, 1286, 1382, 1540
HpyCH4IV	ACGT	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 660, 959, 1097, 1370
HpyF3I	CTNAG	5 cut(s)	132, 816, 1113, 1155, 1472
HpySE526I	ACGT	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	4 cut(s)	101, 254, 883, 922
Kpn2I	TCCGGA	1 cut(s)	43
LmnI	GCTCC	3 cut(s)	892, 1097, 1596
LweI	GCATC	6 cut(s)	58, 874, 902, 946, 1048, 1360
MaeI	CTAG	2 cut(s)	642, 1584
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	246, 648
MboII	GAAGA	6 cut(s)	376, 629, 643, 917, 1158, 1392
MflI	RGATCY	3 cut(s)	566, 847, 1295
MluCI	AATT	2 cut(s)	137, 1384
MlyI	GAGTC	2 cut(s)	716, 1403
MroI	TCCGGA	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	1399
MseI	TTAA	3 cut(s)	696, 1281, 1494
MslI	CAYNNNNRTG	1 cut(s)	1573
MspI	CCGG	2 cut(s)	44, 1172
MspR9I	CCNGG	4 cut(s)	443, 915, 1034, 1442
MvaI	CCWGG	4 cut(s)	443, 915, 1034, 1442
MwoI	GCNNNNNNNGC	5 cut(s)	119, 660, 959, 1097, 1370
NlaIII	CATG	4 cut(s)	101, 254, 883, 922
NlaIV	GGNNCC	3 cut(s)	42, 93, 1191
NmuCI	GTSAC	2 cut(s)	246, 648
PaqCI	CACCTGC	1 cut(s)	1535
PdmI	GAANNNNTTC	1 cut(s)	1399
PfeI	GAWTC	3 cut(s)	22, 1314, 1466
PflFI	GACNNNGTC	1 cut(s)	502
PinAI	ACCGGT	1 cut(s)	1171
Ple19I	CGATCG	1 cut(s)	541
PleI	GAGTC	2 cut(s)	716, 1403
PpsI	GAGTC	2 cut(s)	716, 1403
PpuMI	RGGWCCY	1 cut(s)	92
PshAI	GACNNNNGTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	92
Psp6I	CCWGG	4 cut(s)	441, 913, 1032, 1440
PspGI	CCWGG	4 cut(s)	441, 913, 1032, 1440
PspN4I	GGNNCC	3 cut(s)	42, 93, 1191
PspPI	GGNCC	3 cut(s)	92, 385, 1189
PspPPI	RGGWCCY	1 cut(s)	92
PstNI	CAGNNNCTG	2 cut(s)	896, 1043
PsuI	RGATCY	3 cut(s)	566, 847, 1295
PsyI	GACNNNGTC	1 cut(s)	502
PvuI	CGATCG	1 cut(s)	541
RgaI	GCGATCGC	1 cut(s)	541
RsaI	GTAC	3 cut(s)	452, 734, 765
RsaNI	GTAC	3 cut(s)	451, 733, 764
RseI	CAYNNNNRTG	1 cut(s)	1573
SaqAI	TTAA	3 cut(s)	696, 1281, 1494
Sau96I	GGNCC	3 cut(s)	92, 385, 1189
ScaI	AGTACT	1 cut(s)	452
SchI	GAGTC	2 cut(s)	716, 1403
ScrFI	CCNGG	4 cut(s)	443, 915, 1034, 1442
SfaAI	GCGATCGC	1 cut(s)	541
SfaNI	GCATC	6 cut(s)	58, 874, 902, 946, 1048, 1360
SgfI	GCGATCGC	1 cut(s)	541
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	1573
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	137, 1384
SsiI	CCGC	2 cut(s)	756, 1187
SspMI	CTAG	2 cut(s)	642, 1584
StyD4I	CCNGG	4 cut(s)	441, 913, 1032, 1440
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	4 cut(s)	737, 1286, 1382, 1540
TaiI	ACGT	1 cut(s)	265
TasI	AATT	2 cut(s)	137, 1384
TatI	WGTACW	3 cut(s)	450, 732, 763
TauI	GCSGC	1 cut(s)	1190
TfiI	GAWTC	3 cut(s)	22, 1314, 1466
Tru1I	TTAA	3 cut(s)	696, 1281, 1494
Tru9I	TTAA	3 cut(s)	696, 1281, 1494
TscAI	CASTG	2 cut(s)	697, 1048
TseFI	GTSAC	2 cut(s)	246, 648
Tsp45I	GTSAC	2 cut(s)	246, 648
TspDTI	ATGAA	7 cut(s)	96, 176, 453, 630, 675, 921, 935
TspGWI	ACGGA	2 cut(s)	89, 1007
TspRI	CASTG	2 cut(s)	697, 1048
Tth111I	GACNNNGTC	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	643
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1091, 1448
XmnI	GAANNNNTTC	1 cut(s)	1399
XspI	CTAG	2 cut(s)	642, 1584
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.