MD09G1081800.v1.1

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
5762767 .. 5767660
4894 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1081800.v1.1.491

Sequence Viewer

Length: 1719 bp
ATGTCTTCAACTTCACCTTCTCCAAATTCTTCTCCTTCTGCGGTCTCACCGACTTCATCTGATACCACAACACCACCCCCATCAAATTCTTCAACTACCCCAACAACTACTGCAACCCCTTCTGACGCTTCACCTCCCCCTGCCCAATCTCCTCCTCCAGCATCACCAGCTTCCCCCTCTCCAAAATCATCACCACCTCCGTCAACTCCGCCACCAACTTCACCACCGCCTTCGCCGCCGGCAGCTCCACCCCCATCATCACCTCCTCCAGCATCACCACCACCTTCTCCACCAGCTGCCTCTCCTACAGCTGCGTCTGCACCCCCACCAGATGCTTCCCCACCACCTCCATCAGAAAGTTCTCCCCCTCCCAAATCTTCCCCTACACCTCCTGCAGAAGCCTCACCTCCACCTAAATCCACAGAGTCCCCACCACCTTCGTCCAATTCTCCACCACCGCCACAAGGAGAAGCACCGAAGAAATCTCCTTCATCCCCCACTGGTACACCTCCTCCATCTGCTTCCAAATCTGCTCCTGCACCAGCTGATAAATCTCCCCCTGCATCCACAGTGCAATCACCACCTCCTTCAGTGCCTTCATCTTCTTCACCTCCTGTTACTTCTCCTACCCTGCCCAGTAATTCATCAAATCCCACTCCCTTACCACAGAAGCCAACTGCAAGGTCAACCACTGATGCCAATGTAACATCAAATGCCACATCCGGAAATAAAGGAGGGTTAGACACTGGAGGAGCTGTGGCCATTGGAATTGTAGTTGGATTCCTGGTGATCAGTCTTCTTGTAATGGCGGTGTGGTTTGCAAAGAAGCAGAAGAAAAGAAAAGCTGGAGCAAATCTTGCCTACAGCATGCCTTCCCCCTTTGCTTCATCCCAGAATTCAGATTCAGCATTTCTTAAGCCCTATTCTCCAGCTCCCCTTGTAGGAAATGGTTCTGGCAGCGATTTCATGTATGCACAATCAGATGGTGGCGTTAACAATTCAAAGTCATGGTTCACATATGAAGAACTAATCAAAGCCACGAATGGGTTTTCGAAACAGAATCTTTTGGGCGAAGGTGGATTTGGTTGTGTATACAAAGGTGTTTTGGAAGATGAAAGGGAAGTTGCTGTAAAACAGCTCAAAATTGGTGGGGGACAAGGGGAGCGTGAGTTTAAAGCTGAAGTTGAAATTATTAGTCGAGTACACCATCGCCATTTGGTTTCCCTGGTTGGTTACTGTATATCTGAGCATCAAAGGTTGCTTGTCTACGATTTCGTTCCAAATGATACTCTTCATTACCATCTTCATGGTGAGGGCATGCCAGTCCTGGATTGGGCAACCAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTACATGAAGATTGTCATCCCCGCATTATTCACAGAGATATTAAGTCGTCAAACATCCTTTTGGATAGCAACTTTGAAGCTCAAGTTGCAGATTTTGGGCTTGCAAAGCTAGCATTGGATTCAAATACGCATGTGACCACAAGAGTAATGGGAACATTTGGATACATGGCGCCAGAATATGCAACAAGTGGAAAGTTGACGGACAAGTCTGATGTTTACTCTTATGGTGTTGTGCTATTGGAGCTAATTACAGGTCGCAAACCTGTGGATTCTTCTCAGCCATTGGGTGATGAGAGCCTAGTTGAATGGGTGGAGATTTTACCTGTTTTATGCTAA

Protein Analysis

573

Amino Acids

58.92

Weight (kDa)

6.27

Isoelectric Point (pI)

79.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 351 - 553 9.4e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 353 - 552 4.3e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1588
AccB1I GGYRCC 1 cut(s) 1552
AccI GTMKAC 2 cut(s) 1092, 1266
AccIII TCCGGA 1 cut(s) 722
AciI CCGC 7 cut(s) 41, 209, 227, 236, 458, 809, 1405
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 3 cut(s) 25, 85, 895
AcuI CTGAAG 2 cut(s) 573, 1200
AcyI GRCGYC 1 cut(s) 1553
AfaI GTAC 2 cut(s) 505, 1203
AfiI CCNNNNNNNGG 4 cut(s) 464, 941, 1044, 1333
AflII CTTAAG 1 cut(s) 914
AgsI TTSAA 7 cut(s) 9, 93, 1002, 1187, 1460, 1506, 1688
AjnI CCWGG 3 cut(s) 783, 1224, 1326
AjuI GAANNNNNNNTTGG 2 cut(s) 1065, 1097
Alw26I GTCTC 1 cut(s) 49
Aor13HI TCCGGA 1 cut(s) 722
AoxI GGCC 1 cut(s) 759
ApeKI GCWGC 6 cut(s) 242, 296, 311, 957, 1355, 1364
ApoI RAATTY 3 cut(s) 25, 85, 895
Asp700I GAANNNNTTC 1 cut(s) 949
AspLEI GCGC 1 cut(s) 1555
AsuII TTCGAA 1 cut(s) 1052
AsuNHI GCTAGC 1 cut(s) 1492
BalI TGGCCA 1 cut(s) 761
BanI GGYRCC 1 cut(s) 1552
BauI CACGAG 1 cut(s) 1368
BbsI GAAGAC 1 cut(s) 788
BbvI GCAGC 6 cut(s) 254, 283, 298, 969, 1342, 1376
BccI CCATC 7 cut(s) 88, 262, 358, 523, 977, 1215, 1308
BciT130I CCWGG 3 cut(s) 785, 1226, 1328
BciVI GTATCC 1 cut(s) 1538
BclI TGATCA 1 cut(s) 789
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 2 cut(s) 1493, 1682
BfmI CTRYAG 3 cut(s) 306, 393, 862
BfoI RGCGCY 1 cut(s) 1556
BfrI CTTAAG 1 cut(s) 914
BfuI GTATCC 1 cut(s) 1538
BisI GCNGC 7 cut(s) 236, 243, 297, 312, 958, 1356, 1365
BlsI GCNGC 7 cut(s) 237, 244, 298, 313, 959, 1357, 1366
Bme1390I CCNGG 3 cut(s) 785, 1226, 1328
BmiI GGNNCC 1 cut(s) 1554
BmrFI CCNGG 3 cut(s) 785, 1226, 1328
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 6 cut(s) 170, 281, 322, 572, 685, 1258
BmtI GCTAGC 1 cut(s) 1496
BmuI ACTGGG 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 788
BpmI CTGGAG 5 cut(s) 141, 252, 768, 867, 912
Bpu14I TTCGAA 1 cut(s) 1052
BpuEI CTTGAG 1 cut(s) 1449
BsaBI GATNNNNATC 1 cut(s) 1398
BsaHI GRCGYC 1 cut(s) 1553
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 1224
BsaWI WCCGGW 1 cut(s) 722
BsaXI ACNNNNNCTCC 6 cut(s) 496, 526, 741, 771, 1154, 1184
Bsc4I CCNNNNNNNGG 4 cut(s) 464, 941, 1044, 1333
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 4 cut(s) 505, 636, 751, 1322
Bse8I GATNNNNATC 1 cut(s) 1398
BseAI TCCGGA 1 cut(s) 722
BseBI CCWGG 3 cut(s) 785, 1226, 1328
BseDI CCNNGG 1 cut(s) 1224
BseGI GGATG 6 cut(s) 491, 563, 719, 887, 1399, 1437
BseJI GATNNNNATC 1 cut(s) 1398
BseLI CCNNNNNNNGG 4 cut(s) 464, 941, 1044, 1333
BseMII CTCAG 2 cut(s) 1236, 1673
BseNI ACTGG 4 cut(s) 505, 636, 751, 1322
BseRI GAGGAG 5 cut(s) 141, 144, 255, 501, 765
BseXI GCAGC 6 cut(s) 254, 283, 298, 969, 1342, 1376
BsgI GTGCAG 3 cut(s) 303, 522, 1383
BshFI GGCC 1 cut(s) 761
BshNI GGYRCC 1 cut(s) 1552
BsiSI CCGG 2 cut(s) 239, 723
BslFI GGGAC 2 cut(s) 412, 1167
BslI CCNNNNNNNGG 4 cut(s) 464, 941, 1044, 1333
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 2 cut(s) 412, 1167
BsnI GGCC 1 cut(s) 761
Bso31I GGTCTC 1 cut(s) 49
Bsp119I TTCGAA 1 cut(s) 1052
Bsp13I TCCGGA 1 cut(s) 722
Bsp143I GATC 1 cut(s) 789
BspACI CCGC 7 cut(s) 41, 209, 227, 236, 458, 809, 1405
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 2 cut(s) 1237, 1672
BspEI TCCGGA 1 cut(s) 722
BspLI GGNNCC 1 cut(s) 1554
BspMAI CTGCAG 1 cut(s) 397
BspOI GCTAGC 1 cut(s) 1496
BspT104I TTCGAA 1 cut(s) 1052
BspT107I GGYRCC 1 cut(s) 1552
BspTI CTTAAG 1 cut(s) 914
BspTNI GGTCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 4 cut(s) 505, 636, 751, 1322
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 1224
BssMI GATC 1 cut(s) 789
BssNAI GTATAC 1 cut(s) 1093
BssNI GRCGYC 1 cut(s) 1553
BssSI CACGAG 1 cut(s) 1368
Bst1107I GTATAC 1 cut(s) 1093
Bst2BI CACGAG 1 cut(s) 1368
Bst2UI CCWGG 3 cut(s) 785, 1226, 1328
Bst4CI ACNGT 2 cut(s) 571, 1238
Bst6I CTCTTC 1 cut(s) 1296
BstACI GRCGYC 1 cut(s) 1553
BstAFI CTTAAG 1 cut(s) 914
BstAPI GCANNNNNTGC 1 cut(s) 857
BstBI TTCGAA 1 cut(s) 1052
BstC8I GCNNGC 5 cut(s) 240, 869, 1319, 1485, 1494
BstDEI CTNAG 2 cut(s) 1245, 1659
BstF5I GGATG 6 cut(s) 491, 563, 719, 887, 1399, 1437
BstH2I RGCGCY 1 cut(s) 1556
BstHHI GCGC 1 cut(s) 1555
BstKTI GATC 1 cut(s) 792
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 789
BstNI CCWGG 3 cut(s) 785, 1226, 1328
BstNSI RCATGY 3 cut(s) 871, 1321, 1517
BstSCI CCNGG 3 cut(s) 783, 1224, 1326
BstSFI CTRYAG 3 cut(s) 306, 393, 862
BstV1I GCAGC 6 cut(s) 254, 283, 298, 969, 1342, 1376
BstV2I GAAGAC 1 cut(s) 788
BstXI CCANNNNNNTGG 1 cut(s) 1307
BstZ17I GTATAC 1 cut(s) 1093
BsuI GTATCC 1 cut(s) 1538
BsuRI GGCC 1 cut(s) 761
BtgZI GCGATG 1 cut(s) 1193
BtsCI GGATG 6 cut(s) 491, 563, 719, 887, 1399, 1437
BtsIMutI CAGTG 5 cut(s) 498, 576, 597, 690, 744
Cac8I GCNNGC 5 cut(s) 240, 869, 1319, 1485, 1494
CfoI GCGC 1 cut(s) 1555
Cfr10I RCCGGY 1 cut(s) 238
CseI GACGC 2 cut(s) 134, 303
Csp6I GTAC 2 cut(s) 504, 1202
CspCI CAANNNNNGTGG 2 cut(s) 1129, 1164
CviAII CATG 8 cut(s) 868, 967, 1008, 1307, 1318, 1388, 1514, 1549
CviQI GTAC 2 cut(s) 504, 1202
DdeI CTNAG 2 cut(s) 1245, 1659
DinI GGCGCC 1 cut(s) 1554
DpnI GATC 1 cut(s) 791
DpnII GATC 1 cut(s) 789
DraI TTTAAA 1 cut(s) 1174
DrdI GACNNNNNNGTC 1 cut(s) 1588
DseDI GACNNNNNNGTC 1 cut(s) 1588
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 1296
EarI CTCTTC 1 cut(s) 1296
EciI GGCGGA 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 573, 1200
EcoRI GAATTC 1 cut(s) 895
EcoRII CCWGG 3 cut(s) 783, 1224, 1326
EgeI GGCGCC 1 cut(s) 1554
EheI GGCGCC 1 cut(s) 1554
FaeI CATG 8 cut(s) 871, 970, 1011, 1310, 1321, 1391, 1517, 1552
FaqI GGGAC 2 cut(s) 412, 1167
FatI CATG 8 cut(s) 867, 966, 1007, 1306, 1317, 1387, 1513, 1548
FauI CCCGC 1 cut(s) 1412
FauNDI CATATG 1 cut(s) 1018
FbaI TGATCA 1 cut(s) 789
FblI GTMKAC 2 cut(s) 1092, 1266
Fnu4HI GCNGC 7 cut(s) 236, 243, 297, 312, 958, 1356, 1365
FokI GGATG 6 cut(s) 478, 550, 706, 874, 1386, 1424
Fsp4HI GCNGC 7 cut(s) 236, 243, 297, 312, 958, 1356, 1365
FspBI CTAG 2 cut(s) 1493, 1682
GlaI GCGC 1 cut(s) 1554
GluI GCNGC 7 cut(s) 236, 243, 297, 312, 958, 1356, 1365
GsuI CTGGAG 5 cut(s) 141, 252, 768, 867, 912
HaeII RGCGCY 1 cut(s) 1556
HaeIII GGCC 1 cut(s) 761
HapII CCGG 2 cut(s) 239, 723
HgaI GACGC 2 cut(s) 134, 303
HhaI GCGC 1 cut(s) 1555
Hin1I GRCGYC 1 cut(s) 1553
Hin1II CATG 8 cut(s) 871, 970, 1011, 1310, 1321, 1391, 1517, 1552
Hin6I GCGC 1 cut(s) 1553
HinP1I GCGC 1 cut(s) 1553
HincII GTYRAC 4 cut(s) 204, 687, 994, 1581
HindII GTYRAC 4 cut(s) 204, 687, 994, 1581
HinfI GANTC 7 cut(s) 425, 780, 902, 1060, 1344, 1502, 1652
HpaI GTTAAC 1 cut(s) 994
HpaII CCGG 2 cut(s) 239, 723
Hpy188I TCNGA 7 cut(s) 61, 124, 355, 901, 982, 1246, 1594
Hpy188III TCNNGA 1 cut(s) 723
HpyCH4III ACNGT 2 cut(s) 571, 1238
HpyF3I CTNAG 2 cut(s) 1245, 1659
Hsp92I GRCGYC 1 cut(s) 1553
Hsp92II CATG 8 cut(s) 871, 970, 1011, 1310, 1321, 1391, 1517, 1552
HspAI GCGC 1 cut(s) 1553
KasI GGCGCC 1 cut(s) 1552
Kpn2I TCCGGA 1 cut(s) 722
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 789
KspAI GTTAAC 1 cut(s) 994
Kzo9I GATC 1 cut(s) 789
LmnI GCTCC 7 cut(s) 250, 538, 752, 848, 937, 1162, 1624
Lsp1109I GCAGC 6 cut(s) 254, 283, 298, 969, 1342, 1376
LweI GCATC 6 cut(s) 170, 281, 322, 572, 685, 1258
MaeI CTAG 2 cut(s) 1493, 1682
MaeIII GTNAC 4 cut(s) 616, 703, 1232, 1516
MalI GATC 1 cut(s) 791
MboI GATC 1 cut(s) 789
MlsI TGGCCA 1 cut(s) 761
MluNI TGGCCA 1 cut(s) 761
Mly113I GGCGCC 1 cut(s) 1553
MlyI GAGTC 2 cut(s) 434, 1353
MmeI TCCRAC 1 cut(s) 757
Mox20I TGGCCA 1 cut(s) 761
MroI TCCGGA 1 cut(s) 722
MroNI GCCGGC 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 949
MscI TGGCCA 1 cut(s) 761
MseI TTAA 4 cut(s) 915, 993, 1173, 1425
MslI CAYNNNNRTG 1 cut(s) 1305
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 3 cut(s) 296, 311, 545
MspCI CTTAAG 1 cut(s) 914
MspI CCGG 2 cut(s) 239, 723
MspR9I CCNGG 3 cut(s) 785, 1226, 1328
MvaI CCWGG 3 cut(s) 785, 1226, 1328
NaeI GCCGGC 1 cut(s) 240
NarI GGCGCC 1 cut(s) 1553
NdeI CATATG 1 cut(s) 1018
NdeII GATC 1 cut(s) 789
NgoMIV GCCGGC 1 cut(s) 238
NheI GCTAGC 1 cut(s) 1492
NlaIII CATG 8 cut(s) 871, 970, 1011, 1310, 1321, 1391, 1517, 1552
NlaIV GGNNCC 1 cut(s) 1554
NmuCI GTSAC 1 cut(s) 1516
NspI RCATGY 3 cut(s) 871, 1321, 1517
NspV TTCGAA 1 cut(s) 1052
PaeI GCATGC 2 cut(s) 871, 1321
PdiI GCCGGC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 949
PfeI GAWTC 5 cut(s) 780, 902, 1060, 1502, 1652
PfoI TCCNGGA 1 cut(s) 1326
PkrI GCNGC 7 cut(s) 237, 244, 298, 313, 959, 1357, 1366
PleI GAGTC 2 cut(s) 433, 1352
PluTI GGCGCC 1 cut(s) 1556
PpsI GAGTC 2 cut(s) 433, 1352
Psp6I CCWGG 3 cut(s) 783, 1224, 1326
PspGI CCWGG 3 cut(s) 783, 1224, 1326
PspN4I GGNNCC 1 cut(s) 1554
PstI CTGCAG 1 cut(s) 397
PvuII CAGCTG 3 cut(s) 296, 311, 545
RsaI GTAC 2 cut(s) 505, 1203
RsaNI GTAC 2 cut(s) 504, 1202
RseI CAYNNNNRTG 1 cut(s) 1305
SaqAI TTAA 4 cut(s) 915, 993, 1173, 1425
SatI GCNGC 7 cut(s) 236, 243, 297, 312, 958, 1356, 1365
Sau3AI GATC 1 cut(s) 789
SchI GAGTC 2 cut(s) 434, 1353
ScrFI CCNGG 3 cut(s) 785, 1226, 1328
SfaNI GCATC 6 cut(s) 170, 281, 322, 572, 685, 1258
SfcI CTRYAG 3 cut(s) 306, 393, 862
SfoI GGCGCC 1 cut(s) 1554
SfuI TTCGAA 1 cut(s) 1052
SmiMI CAYNNNNRTG 1 cut(s) 1305
SmlI CTYRAG 2 cut(s) 914, 1464
SmoI CTYRAG 2 cut(s) 914, 1464
SphI GCATGC 2 cut(s) 871, 1321
SsiI CCGC 7 cut(s) 41, 209, 227, 236, 458, 809, 1405
SspDI GGCGCC 1 cut(s) 1552
SspMI CTAG 2 cut(s) 1493, 1682
StyD4I CCNGG 3 cut(s) 783, 1224, 1326
TaaI ACNGT 2 cut(s) 571, 1238
TaqI TCGA 2 cut(s) 1052, 1198
TatI WGTACW 1 cut(s) 1201
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 5 cut(s) 780, 902, 1060, 1502, 1652
Tru1I TTAA 4 cut(s) 915, 993, 1173, 1425
Tru9I TTAA 4 cut(s) 915, 993, 1173, 1425
TscAI CASTG 5 cut(s) 505, 576, 597, 697, 751
TseFI GTSAC 1 cut(s) 1516
TseI GCWGC 6 cut(s) 242, 296, 311, 957, 1355, 1364
Tsp45I GTSAC 1 cut(s) 1516
TspGWI ACGGA 2 cut(s) 189, 1598
TspRI CASTG 5 cut(s) 505, 576, 597, 697, 751
Vha464I CTTAAG 1 cut(s) 914
XapI RAATTY 3 cut(s) 25, 85, 895
XceI RCATGY 3 cut(s) 871, 1321, 1517
XcmI CCANNNNNNNNNTGG 2 cut(s) 1329, 1528
XmiI GTMKAC 2 cut(s) 1092, 1266
XmnI GAANNNNTTC 1 cut(s) 949
XspI CTAG 2 cut(s) 1493, 1682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.