Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007569

Physical Location & Seq

Genomic Coordinates Forward (+)

650042 .. 651930

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTCTTCAACTTCACCTTCTCCAAATTCTTCCCCTTCTGCGGTCTCACCGACTTCATCTGATACCACAACACCACCCCCATCAAATTCTTCAACTACCCCAACAACTACTGCAACCCCTTCTGACGCTTCACCTCCCCCTGCCCAATCTCCTCCTCCAGCATCACCAGCTGCCCCCTCTCCAAAATCATCACCACCTCCGTCAACTCCGCCACCAACTTCACCACCGCCTGCAGCTCCACCCCCATCATCTACTGCTTCTCCAACCGCGGCACCACCCCCATCATCACCTCCTCCAGCATCACCACCACCTTCTCCACCAGCTGCCTCTCCTCCAGCTGCGTCTTCACCTCCATCAGAAGGTTCTCCCCCTCCCAAATCTTCCCCTACACCTCCTGTAGAAGCCTCACCTCCACCTAAATCCGCAGATTCCCCGCCACCTTCGTCCAATTCTCCACCACCACCACAAGGAGAAGCACCAAAGAAATCTCCTTCATCCCCCACTGGTACACCTCCTCCATCTGCTTCCAAATCTGCCCCTGCACCAGCTGATAAATCTCCCCCTGCATCCACGGTGCAATCACCACCTCCTCCCAGTAATTCATCAAGTCCCACTAGCATACCACAGAAGCCAACTGCAAGGTCAACCACTGATGCCAATGTAACATCAAATGCCACATCCGGAAATAAAGGAGGGTTAGACACTGGAGGAGCTTTGACAATTGGAATTGTAGTTGGATTCCTGGTGCTCAGTCTTGTTGTAATGGCGGTGTGGTTCGCAAAGAAGCAGAAGAGAAGAAGAGCACATCTTGCCTACAACATGCCCTCCCCATTTGCTTCATCCCAGAATTCAGATTCAGCATTTCTTAAGCCCTATTCTCCAGCTCCCCTTGTAGGAAATGGTTCTGGCAGCGATTACATGTATGCACAATCAGATGGTGGCGTTAACAATTCAAAGTCATGGTTCACATATGAAGAACTAATCAAAGCCACAAATGGGTTTTCAAAACTGAATCTTTTGGGCGAAGGTGGATTTGGTTGTGTATACAAAGGTGTTTTGGAAGATGAAAGAGAAGTTGCTGTAAAACAGCTCAAAATTGGTGGGGGACAAGGGGAGCGTGAGTTTAAAGCTGAAGTTGAAATTATTAGTCGAGTACACCATCGCCATTTGGTTTCCCTGGTTGGTTACTGTATATCCGAGCATCAAAGGTTGCTTGTCTACGATTTCGTTCCAAATGATACTCTTCATTACCATCTTCATGGTAACTGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

425

Amino Acids

43.09

Weight (kDa)

8.83

Isoelectric Point (pI)

92.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38560
fragaria_vesca	FvH4_6g45530 FvH4_6g45530 FvH4_6g45530 FvH4_6g45530
malus_domestica	MD09G1081800.v1.1 MD09G1082000.v1.1 MD17G1072800.v1.1
prunus_persica	Prupe.3G241100_v2.0.a1 Prupe.3G241800_v2.0.a1
pyrus_communis	pycom09g00850 pycom17g07370
rosa_chinensis	RchiOBHm_Chr2g0163481
rosa_laevigata	RLG00000021405
rosa_multiflora	Rmu_ssc0000335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087280
rosa_rugosa	Rorug02G0503100 Rorug02G0503200 Rorug02G0503300
rosa_samantha	Rh2AG570100 Rh2BG582300 Rh2CG552100 Rh2DG592100
rosa_wichuraiana	Rw2G047200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccI	GTMKAC	2 cut(s)	1044, 1218
AccII	CGCG	1 cut(s)	269
AccIII	TCCGGA	1 cut(s)	680
AciI	CCGC	8 cut(s)	41, 209, 227, 267, 269, 423, 434, 767
AcsI	RAATTY	3 cut(s)	25, 85, 847
AcuI	CTGAAG	1 cut(s)	1152
AfaI	GTAC	2 cut(s)	508, 1155
AfiI	CCNNNNNNNGG	5 cut(s)	40, 359, 467, 893, 996
AflII	CTTAAG	1 cut(s)	866
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	5 cut(s)	9, 93, 954, 1005, 1139
AjnI	CCWGG	2 cut(s)	741, 1176
AjuI	GAANNNNNNNTTGG	2 cut(s)	1017, 1049
AluBI	AGCT	9 cut(s)	170, 236, 323, 338, 548, 713, 884, 1090, 1130
AluI	AGCT	9 cut(s)	170, 236, 323, 338, 548, 713, 884, 1090, 1130
Alw21I	GWGCWC	2 cut(s)	750, 805
Alw26I	GTCTC	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	680
ApeKI	GCWGC	5 cut(s)	170, 233, 323, 338, 909
ApoI	RAATTY	3 cut(s)	25, 85, 847
Asp700I	GAANNNNTTC	1 cut(s)	901
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	750, 805
BbvI	GCAGC	5 cut(s)	157, 245, 310, 325, 921
BccI	CCATC	8 cut(s)	88, 253, 289, 361, 526, 929, 1167, 1260
BciT130I	CCWGG	2 cut(s)	743, 1178
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	3 cut(s)	231, 396, 1267
BfrI	CTTAAG	1 cut(s)	866
BisI	GCNGC	6 cut(s)	171, 234, 270, 324, 339, 910
BlsI	GCNGC	6 cut(s)	172, 235, 271, 325, 340, 911
Bme1390I	CCNGG	2 cut(s)	743, 1178
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	743, 1178
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	5 cut(s)	170, 308, 575, 643, 1210
BmuI	ACTGGG	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	5 cut(s)	141, 279, 318, 726, 864
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	267, 570, 1176
BsaWI	WCCGGW	1 cut(s)	680
BsaXI	ACNNNNNCTCC	8 cut(s)	244, 274, 499, 529, 809, 839, 1106, 1136
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 359, 467, 893, 996
Bse1I	ACTGG	3 cut(s)	508, 594, 709
BseAI	TCCGGA	1 cut(s)	680
BseBI	CCWGG	2 cut(s)	743, 1178
BseDI	CCNNGG	3 cut(s)	267, 570, 1176
BseGI	GGATG	4 cut(s)	494, 566, 677, 839
BseLI	CCNNNNNNNGG	5 cut(s)	40, 359, 467, 893, 996
BseMII	CTCAG	1 cut(s)	763
BseNI	ACTGG	3 cut(s)	508, 594, 709
BseRI	GAGGAG	7 cut(s)	141, 144, 282, 321, 504, 579, 723
BseXI	GCAGC	5 cut(s)	157, 245, 310, 325, 921
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	750, 805
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	2 cut(s)	594, 1119
BslI	CCNNNNNNNGG	5 cut(s)	40, 359, 467, 893, 996
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	2 cut(s)	594, 1119
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	750, 805
Bsp13I	TCCGGA	1 cut(s)	680
BspACI	CCGC	8 cut(s)	41, 209, 227, 267, 269, 423, 434, 767
BspCNI	CTCAG	1 cut(s)	762
BspEI	TCCGGA	1 cut(s)	680
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	793
BspT107I	GGYRCC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	866
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	508, 594, 709
BssECI	CCNNGG	3 cut(s)	267, 570, 1176
BssNAI	GTATAC	1 cut(s)	1045
Bst1107I	GTATAC	1 cut(s)	1045
Bst2UI	CCWGG	2 cut(s)	743, 1178
Bst4CI	ACNGT	3 cut(s)	574, 1190, 1268
Bst6I	CTCTTC	3 cut(s)	785, 793, 1248
BstAFI	CTTAAG	1 cut(s)	866
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	749
BstDSI	CCRYGG	2 cut(s)	267, 570
BstF5I	GGATG	4 cut(s)	494, 566, 677, 839
BstFNI	CGCG	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 809
BstNI	CCWGG	2 cut(s)	743, 1178
BstNSI	RCATGY	2 cut(s)	823, 922
BstSCI	CCNGG	2 cut(s)	741, 1176
BstSFI	CTRYAG	3 cut(s)	231, 396, 1267
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	5 cut(s)	157, 245, 310, 325, 921
BstV2I	GAAGAC	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	1259
BstZ17I	GTATAC	1 cut(s)	1045
BtgI	CCRYGG	2 cut(s)	267, 570
BtgZI	GCGATG	1 cut(s)	1145
BtsCI	GGATG	4 cut(s)	494, 566, 677, 839
BtsIMutI	CAGTG	3 cut(s)	501, 648, 702
Cac8I	GCNNGC	1 cut(s)	231
Cfr42I	CCGCGG	1 cut(s)	270
CseI	GACGC	2 cut(s)	134, 330
Csp6I	GTAC	2 cut(s)	507, 1154
CspCI	CAANNNNNGTGG	2 cut(s)	1081, 1116
CviAII	CATG	4 cut(s)	820, 919, 960, 1259
CviQI	GTAC	2 cut(s)	507, 1154
DdeI	CTNAG	1 cut(s)	749
DraI	TTTAAA	1 cut(s)	1126
Eam1104I	CTCTTC	3 cut(s)	785, 793, 1248
EarI	CTCTTC	3 cut(s)	785, 793, 1248
EciI	GGCGGA	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	1152
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	741, 1176
FaeI	CATG	4 cut(s)	823, 922, 963, 1262
FaqI	GGGAC	2 cut(s)	594, 1119
FatI	CATG	4 cut(s)	819, 918, 959, 1258
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	1 cut(s)	970
FblI	GTMKAC	2 cut(s)	1044, 1218
Fnu4HI	GCNGC	6 cut(s)	171, 234, 270, 324, 339, 910
FokI	GGATG	4 cut(s)	481, 553, 664, 826
Fsp4HI	GCNGC	6 cut(s)	171, 234, 270, 324, 339, 910
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	6 cut(s)	171, 234, 270, 324, 339, 910
GsuI	CTGGAG	5 cut(s)	141, 279, 318, 726, 864
HapII	CCGG	1 cut(s)	681
HgaI	GACGC	2 cut(s)	134, 330
Hin1II	CATG	4 cut(s)	823, 922, 963, 1262
HincII	GTYRAC	3 cut(s)	204, 645, 946
HindII	GTYRAC	3 cut(s)	204, 645, 946
HinfI	GANTC	4 cut(s)	428, 738, 854, 1012
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	1 cut(s)	681
Hpy166II	GTNNAC	8 cut(s)	204, 509, 645, 946, 966, 1045, 1156, 1219
Hpy188I	TCNGA	6 cut(s)	61, 124, 358, 853, 934, 1198
Hpy188III	TCNNGA	1 cut(s)	681
Hpy8I	GTNNAC	8 cut(s)	204, 509, 645, 946, 966, 1045, 1156, 1219
HpyAV	CCTTC	8 cut(s)	27, 45, 129, 321, 353, 450, 501, 1019
HpyCH4III	ACNGT	3 cut(s)	574, 1190, 1268
HpyCH4V	TGCA	7 cut(s)	113, 233, 542, 566, 577, 638, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 809
HpyF3I	CTNAG	1 cut(s)	749
Hsp92II	CATG	4 cut(s)	823, 922, 963, 1262
Kpn2I	TCCGGA	1 cut(s)	680
KspAI	GTTAAC	1 cut(s)	946
KspI	CCGCGG	1 cut(s)	270
LguI	GCTCTTC	1 cut(s)	793
LmnI	GCTCC	4 cut(s)	241, 710, 889, 1114
Lsp1109I	GCAGC	5 cut(s)	157, 245, 310, 325, 921
LweI	GCATC	5 cut(s)	170, 308, 575, 643, 1210
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	3 cut(s)	661, 1184, 1262
MfeI	CAATTG	1 cut(s)	720
MhlI	GDGCHC	2 cut(s)	750, 805
MmeI	TCCRAC	2 cut(s)	287, 715
MroI	TCCGGA	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	901
MseI	TTAA	3 cut(s)	867, 945, 1125
MslI	CAYNNNNRTG	1 cut(s)	1257
MspA1I	CMGCKG	5 cut(s)	170, 269, 323, 338, 548
MspCI	CTTAAG	1 cut(s)	866
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	2 cut(s)	743, 1178
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	2 cut(s)	743, 1178
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	167, 809
NdeI	CATATG	1 cut(s)	970
NlaIII	CATG	4 cut(s)	823, 922, 963, 1262
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	2 cut(s)	823, 922
PciI	ACATGT	1 cut(s)	918
PciSI	GCTCTTC	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	901
PfeI	GAWTC	4 cut(s)	428, 738, 854, 1012
PkrI	GCNGC	6 cut(s)	172, 235, 271, 325, 340, 911
PscI	ACATGT	1 cut(s)	918
Psp6I	CCWGG	2 cut(s)	741, 1176
PspGI	CCWGG	2 cut(s)	741, 1176
PspN4I	GGNNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	235
PvuII	CAGCTG	4 cut(s)	170, 323, 338, 548
RsaI	GTAC	2 cut(s)	508, 1155
RsaNI	GTAC	2 cut(s)	507, 1154
RseI	CAYNNNNRTG	1 cut(s)	1257
SacII	CCGCGG	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	793
SaqAI	TTAA	3 cut(s)	867, 945, 1125
SatI	GCNGC	6 cut(s)	171, 234, 270, 324, 339, 910
ScrFI	CCNGG	2 cut(s)	743, 1178
SduI	GDGCHC	2 cut(s)	750, 805
SfaNI	GCATC	5 cut(s)	170, 308, 575, 643, 1210
SfcI	CTRYAG	3 cut(s)	231, 396, 1267
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	1257
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SsiI	CCGC	8 cut(s)	41, 209, 227, 267, 269, 423, 434, 767
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	741, 1176
TaaI	ACNGT	3 cut(s)	574, 1190, 1268
TaqI	TCGA	1 cut(s)	1150
TatI	WGTACW	1 cut(s)	1153
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	4 cut(s)	428, 738, 854, 1012
Tru1I	TTAA	3 cut(s)	867, 945, 1125
Tru9I	TTAA	3 cut(s)	867, 945, 1125
TscAI	CASTG	3 cut(s)	508, 655, 709
TseI	GCWGC	5 cut(s)	170, 233, 323, 338, 909
TspDTI	ATGAA	8 cut(s)	45, 483, 591, 828, 987, 1080, 1235, 1247
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	508, 655, 709
Vha464I	CTTAAG	1 cut(s)	866
XapI	RAATTY	3 cut(s)	25, 85, 847
XceI	RCATGY	2 cut(s)	823, 922
XmiI	GTMKAC	2 cut(s)	1044, 1218
XmnI	GAANNNNTTC	1 cut(s)	901
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.