Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007569

Physical Location & Seq

Genomic Coordinates Forward (+)

9368084 .. 9373830

Gene Structure 5747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGTATGCACAATCAGAGTCTGGAGCAAGCAATTCAAGATCATGGTTCACATATGAAGAACTGATCCAAGCCACAAATGGATTTTCGAAACAGAATCTTTTGGGTGAAGGGGGATTTGGTTGTGTGTACAAAGGTATCCTGGAAGATGGAAGAGAAGTTGCTGTTAAACAGCTAAAAATTGGTGGTGGACAAGGGGAACGTGAGTTCCGAGCTGAAGTTGAAATCATCAGTCGAGTACACCATCGCCATTTGGTTTCCCTGGTGGGTTACTGTATATCTGAGCATCAAAGGTTGCTTGTCTACGACTTTGTTCCAAACGATACCCTTCATTACCATCTTCATGGTCAGGACATGCCAGTTATGGATTGGGCAACTAGAGTCAAAGTTGCTGCTGGTGCAGCTCGTGGGATAGCTTACTTACATGAAGATTGCCATCCTCGCATTATTCATAGAGATATCAAGTCATCAAACATCCTTCTGGATAGCAACTTTGAAGCTCAGGTTGCAGATTTTGGGCTTGCAAAGCTAGCGTTGGATACAAATACACATGTAACCACACGAGTCATGGGGACATTTGGATACATGGCTCCAGAATATGCAACAAGTGGAAAGTTGACAGATAAGTCTGATGTTTATTCTTATGGCGTTGTACTATTGGAGTTGATTACTGGTCGCAAGCCTGTGGATGGCTCTCAGCCATTGGGTGATGAGAGCCTTGTTGAATGGGCTCGACCTTTGCTTACTGATGCAGTTGAAACTGGAGACTTTAGTGAGTTGGCAGATCCAAGGCTGGAAGAGAATTATGTTGAGAATGAAATGTTTCGAATGATTGAGGCGGCTTCAGCTTGTGTGCGTCATTCAGCTACTAAAAGGCCACGAATGAGACAGGTGGTAAGGGCTTTAGACTCCTTGGATGATACCTCAGATCTCAGTAACGGAATGAAACCTGGCCAGAGTGAAGTTTTTAATTCCGCAGATCAATCTGCACAAATTAGAATGTTCCAAAGAATGGCATTTGCTAGTCAGGATTACAGTACGAGTTACTTTAATCAAAGTCAGAGTAGCTGGAAAAGTAGAGATAACGGGGACCAAACTCGAAGTAGCTGGAATAGAGACCAGCGGGACCAGAGTAGAGAGCACGGAGACCAAACTCGGAGTACCTGGAGTAGAGACCAGAGAGACCAGGATACTGTAGTACCGATAGATAGATCTGGAGTATGGAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

409

Amino Acids

46.11

Weight (kDa)

5.5

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 235	2.6e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 301	3.7e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38560
fragaria_vesca	FvH4_6g45530 FvH4_6g45530 FvH4_6g45530 FvH4_6g45530
malus_domestica	MD09G1081800.v1.1 MD09G1082000.v1.1 MD17G1072800.v1.1
prunus_persica	Prupe.3G241100_v2.0.a1 Prupe.3G241800_v2.0.a1
pyrus_communis	pycom09g00850 pycom17g07370
rosa_chinensis	RchiOBHm_Chr2g0163481
rosa_laevigata	RLG00000021405
rosa_multiflora	Rmu_ssc0000335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087280
rosa_rugosa	Rorug02G0503100 Rorug02G0503200 Rorug02G0503300
rosa_samantha	Rh2AG570100 Rh2BG582300 Rh2CG552100 Rh2DG592100
rosa_wichuraiana	Rw2G047200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	622
AccB7I	CCANNNNNTGG	1 cut(s)	1009
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	3 cut(s)	836, 972, 1120
AclWI	GGATC	2 cut(s)	58, 776
AcoI	YGGCCR	1 cut(s)	949
AcuI	CTGAAG	2 cut(s)	234, 825
AfaI	GTAC	6 cut(s)	128, 237, 651, 1036, 1159, 1197
AfiI	CCNNNNNNNGG	2 cut(s)	686, 1009
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	5 cut(s)	36, 221, 494, 722, 755
AjnI	CCWGG	5 cut(s)	138, 258, 946, 1160, 1182
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AloI	GAACNNNNNNTCC	4 cut(s)	188, 189, 220, 221
Alw21I	GWGCWC	1 cut(s)	1140
Alw26I	GTCTC	6 cut(s)	756, 877, 1107, 1137, 1164, 1173
AlwI	GGATC	2 cut(s)	58, 776
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	2 cut(s)	872, 949
ApeKI	GCWGC	2 cut(s)	389, 398
Asp700I	GAANNNNTTC	1 cut(s)	819
AspS9I	GGNCC	2 cut(s)	1087, 1123
AsuHPI	GGTGA	2 cut(s)	116, 716
AsuII	TTCGAA	2 cut(s)	86, 823
AsuNHI	GCTAGC	1 cut(s)	526
AvaII	GGWCC	2 cut(s)	1087, 1123
BaeI	ACNNNNGTAYC	6 cut(s)	118, 151, 1179, 1179, 1212, 1212
BalI	TGGCCA	1 cut(s)	951
BanII	GRGCYC	1 cut(s)	730
BauI	CACGAG	2 cut(s)	402, 558
Bbv12I	GWGCWC	1 cut(s)	1140
BbvI	GCAGC	2 cut(s)	376, 410
BccI	CCATC	5 cut(s)	140, 249, 342, 441, 680
BciT130I	CCWGG	5 cut(s)	140, 260, 948, 1162, 1184
BciVI	GTATCC	4 cut(s)	146, 529, 572, 1180
BcoDI	GTCTC	6 cut(s)	756, 877, 1107, 1137, 1164, 1173
BfaI	CTAG	3 cut(s)	375, 527, 1020
BfmI	CTRYAG	1 cut(s)	1191
BfuI	GTATCC	4 cut(s)	146, 529, 572, 1180
BglII	AGATCT	2 cut(s)	925, 1208
BisI	GCNGC	3 cut(s)	390, 399, 837
BlsI	GCNGC	3 cut(s)	391, 400, 838
Bme1390I	CCNGG	5 cut(s)	140, 260, 948, 1162, 1184
Bme18I	GGWCC	2 cut(s)	1087, 1123
BmgT120I	GGNCC	2 cut(s)	1087, 1123
BmiI	GGNNCC	3 cut(s)	588, 1088, 1124
BmrFI	CCNGG	5 cut(s)	140, 260, 948, 1162, 1184
BmsI	GCATC	2 cut(s)	292, 736
BmtI	GCTAGC	1 cut(s)	530
BpmI	CTGGAG	4 cut(s)	42, 573, 780, 1183
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	2 cut(s)	86, 823
BsaBI	GATNNNNATC	1 cut(s)	432
BsaI	GGTCTC	4 cut(s)	1107, 1137, 1164, 1173
BsaJI	CCNNGG	3 cut(s)	258, 785, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 1009
Bse1I	ACTGG	3 cut(s)	356, 673, 763
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	5 cut(s)	140, 260, 948, 1162, 1184
BseDI	CCNNGG	3 cut(s)	258, 785, 909
BseGI	GGATG	4 cut(s)	433, 471, 691, 919
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	686, 1009
BseMII	CTCAG	5 cut(s)	270, 512, 707, 936, 943
BseNI	ACTGG	3 cut(s)	356, 673, 763
BseXI	GCAGC	2 cut(s)	376, 410
BsgI	GTGCAG	2 cut(s)	417, 969
BshFI	GGCC	2 cut(s)	874, 951
BsiHKAI	GWGCWC	1 cut(s)	1140
BslFI	GGGAC	3 cut(s)	583, 1100, 1136
BslI	CCNNNNNNNGG	2 cut(s)	686, 1009
BsmAI	GTCTC	6 cut(s)	756, 877, 1107, 1137, 1164, 1173
BsmFI	GGGAC	3 cut(s)	583, 1100, 1136
BsnI	GGCC	2 cut(s)	874, 951
Bso31I	GGTCTC	4 cut(s)	1107, 1137, 1164, 1173
Bsp119I	TTCGAA	2 cut(s)	86, 823
Bsp1286I	GDGCHC	2 cut(s)	730, 1140
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	6 cut(s)	38, 63, 781, 925, 976, 1208
BspACI	CCGC	3 cut(s)	836, 972, 1120
BspANI	GGCC	2 cut(s)	874, 951
BspCNI	CTCAG	5 cut(s)	271, 511, 706, 935, 942
BspLI	GGNNCC	3 cut(s)	588, 1088, 1124
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	58, 776
BspT104I	TTCGAA	2 cut(s)	86, 823
BspTNI	GGTCTC	4 cut(s)	1107, 1137, 1164, 1173
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	3 cut(s)	356, 673, 763
BssECI	CCNNGG	3 cut(s)	258, 785, 909
BssMI	GATC	6 cut(s)	38, 63, 781, 925, 976, 1208
BssSI	CACGAG	2 cut(s)	402, 558
BssT1I	CCWWGG	2 cut(s)	785, 909
Bst2BI	CACGAG	2 cut(s)	402, 558
Bst2UI	CCWGG	5 cut(s)	140, 260, 948, 1162, 1184
Bst4CI	ACNGT	3 cut(s)	272, 1034, 1192
Bst6I	CTCTTC	2 cut(s)	145, 789
BstAUI	TGTACA	1 cut(s)	126
BstBI	TTCGAA	2 cut(s)	86, 823
BstC8I	GCNNGC	4 cut(s)	28, 519, 528, 677
BstDEI	CTNAG	5 cut(s)	279, 498, 693, 922, 929
BstF5I	GGATG	4 cut(s)	433, 471, 691, 919
BstKTI	GATC	6 cut(s)	41, 66, 784, 928, 979, 1211
BstMAI	GTCTC	6 cut(s)	756, 877, 1107, 1137, 1164, 1173
BstMBI	GATC	6 cut(s)	38, 63, 781, 925, 976, 1208
BstMWI	GCNNNNNNNGC	7 cut(s)	395, 398, 438, 503, 523, 527, 842
BstNI	CCWGG	5 cut(s)	140, 260, 948, 1162, 1184
BstNSI	RCATGY	2 cut(s)	355, 551
BstSCI	CCNGG	5 cut(s)	138, 258, 946, 1160, 1182
BstSFI	CTRYAG	1 cut(s)	1191
BstV1I	GCAGC	2 cut(s)	376, 410
BstX2I	RGATCY	3 cut(s)	781, 925, 1208
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	3 cut(s)	781, 925, 1208
BsuI	GTATCC	4 cut(s)	146, 529, 572, 1180
BsuRI	GGCC	2 cut(s)	874, 951
BtgZI	GCGATG	1 cut(s)	227
BtsCI	GGATG	4 cut(s)	433, 471, 691, 919
Cac8I	GCNNGC	4 cut(s)	28, 519, 528, 677
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	1087, 1123
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	6 cut(s)	127, 236, 650, 1035, 1158, 1196
CviAII	CATG	7 cut(s)	42, 341, 352, 422, 548, 565, 583
CviQI	GTAC	6 cut(s)	127, 236, 650, 1035, 1158, 1196
DdeI	CTNAG	5 cut(s)	279, 498, 693, 922, 929
DpnI	GATC	6 cut(s)	40, 65, 783, 927, 978, 1210
DpnII	GATC	6 cut(s)	38, 63, 781, 925, 976, 1208
DrdI	GACNNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	949
Eam1104I	CTCTTC	2 cut(s)	145, 789
EarI	CTCTTC	2 cut(s)	145, 789
Eco130I	CCWWGG	2 cut(s)	785, 909
Eco24I	GRGCYC	1 cut(s)	730
Eco31I	GGTCTC	4 cut(s)	1107, 1137, 1164, 1173
Eco32I	GATATC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	1087, 1123
Eco57I	CTGAAG	2 cut(s)	234, 825
EcoRII	CCWGG	5 cut(s)	138, 258, 946, 1160, 1182
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	2 cut(s)	785, 909
EcoT38I	GRGCYC	1 cut(s)	730
ErhI	CCWWGG	2 cut(s)	785, 909
FaeI	CATG	7 cut(s)	45, 344, 355, 425, 551, 568, 586
FaqI	GGGAC	3 cut(s)	583, 1100, 1136
FatI	CATG	7 cut(s)	41, 340, 351, 421, 547, 564, 582
FauI	CCCGC	1 cut(s)	1113
FauNDI	CATATG	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	390, 399, 837
FokI	GGATG	4 cut(s)	420, 458, 698, 926
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	3 cut(s)	390, 399, 837
FspBI	CTAG	3 cut(s)	375, 527, 1020
GluI	GCNGC	3 cut(s)	390, 399, 837
GsuI	CTGGAG	4 cut(s)	42, 573, 780, 1183
HaeIII	GGCC	2 cut(s)	874, 951
HgaI	GACGC	1 cut(s)	842
Hin1II	CATG	7 cut(s)	45, 344, 355, 425, 551, 568, 586
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	5 cut(s)	17, 94, 378, 561, 905
HphI	GGTGA	2 cut(s)	116, 716
Hpy166II	GTNNAC	6 cut(s)	48, 127, 188, 238, 301, 615
Hpy188I	TCNGA	7 cut(s)	16, 209, 280, 628, 925, 1059, 1155
Hpy188III	TCNNGA	7 cut(s)	21, 36, 347, 479, 590, 1025, 1212
Hpy8I	GTNNAC	6 cut(s)	48, 127, 188, 238, 301, 615
HpyAV	CCTTC	3 cut(s)	101, 335, 485
HpyCH4III	ACNGT	3 cut(s)	272, 1034, 1192
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	8, 398, 506, 521, 599, 749, 986
HpyF10VI	GCNNNNNNNGC	7 cut(s)	395, 398, 438, 503, 523, 527, 842
HpyF3I	CTNAG	5 cut(s)	279, 498, 693, 922, 929
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	7 cut(s)	45, 344, 355, 425, 551, 568, 586
Kzo9I	GATC	6 cut(s)	38, 63, 781, 925, 976, 1208
LmnI	GCTCC	2 cut(s)	23, 592
Lsp1109I	GCAGC	2 cut(s)	376, 410
LweI	GCATC	2 cut(s)	292, 736
MaeI	CTAG	3 cut(s)	375, 527, 1020
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	4 cut(s)	266, 550, 932, 1040
MalI	GATC	6 cut(s)	40, 65, 783, 927, 978, 1210
MboI	GATC	6 cut(s)	38, 63, 781, 925, 976, 1208
MboII	GAAGA	6 cut(s)	68, 155, 162, 329, 437, 806
MflI	RGATCY	3 cut(s)	781, 925, 1208
MhlI	GDGCHC	2 cut(s)	730, 1140
MlsI	TGGCCA	1 cut(s)	951
MluCI	AATT	5 cut(s)	31, 177, 799, 967, 990
MluNI	TGGCCA	1 cut(s)	951
MlyI	GAGTC	4 cut(s)	26, 387, 570, 899
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	3 cut(s)	447, 826, 931
Mox20I	TGGCCA	1 cut(s)	951
MroXI	GAANNNNTTC	1 cut(s)	819
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	3 cut(s)	165, 966, 1047
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	951
MspA1I	CMGCKG	1 cut(s)	1120
MspR9I	CCNGG	5 cut(s)	140, 260, 948, 1162, 1184
MvaI	CCWGG	5 cut(s)	140, 260, 948, 1162, 1184
MwoI	GCNNNNNNNGC	7 cut(s)	395, 398, 438, 503, 523, 527, 842
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	6 cut(s)	38, 63, 781, 925, 976, 1208
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	7 cut(s)	45, 344, 355, 425, 551, 568, 586
NlaIV	GGNNCC	3 cut(s)	588, 1088, 1124
NspI	RCATGY	2 cut(s)	355, 551
NspV	TTCGAA	2 cut(s)	86, 823
PciI	ACATGT	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	1009
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	391, 400, 838
PleI	GAGTC	4 cut(s)	25, 386, 569, 899
PpsI	GAGTC	4 cut(s)	25, 386, 569, 899
PscI	ACATGT	1 cut(s)	547
Psp6I	CCWGG	5 cut(s)	138, 258, 946, 1160, 1182
PspGI	CCWGG	5 cut(s)	138, 258, 946, 1160, 1182
PspN4I	GGNNCC	3 cut(s)	588, 1088, 1124
PspPI	GGNCC	2 cut(s)	1087, 1123
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	3 cut(s)	781, 925, 1208
RsaI	GTAC	6 cut(s)	128, 237, 651, 1036, 1159, 1197
RsaNI	GTAC	6 cut(s)	127, 236, 650, 1035, 1158, 1196
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	165, 966, 1047
SatI	GCNGC	3 cut(s)	390, 399, 837
Sau3AI	GATC	6 cut(s)	38, 63, 781, 925, 976, 1208
Sau96I	GGNCC	2 cut(s)	1087, 1123
SchI	GAGTC	4 cut(s)	26, 387, 570, 899
ScrFI	CCNGG	5 cut(s)	140, 260, 948, 1162, 1184
SduI	GDGCHC	2 cut(s)	730, 1140
SfaNI	GCATC	2 cut(s)	292, 736
SfcI	CTRYAG	1 cut(s)	1191
SfuI	TTCGAA	2 cut(s)	86, 823
SinI	GGWCC	2 cut(s)	1087, 1123
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	5 cut(s)	31, 177, 799, 967, 990
SsiI	CCGC	3 cut(s)	836, 972, 1120
SspMI	CTAG	3 cut(s)	375, 527, 1020
StyD4I	CCNGG	5 cut(s)	138, 258, 946, 1160, 1182
StyI	CCWWGG	2 cut(s)	785, 909
TaaI	ACNGT	3 cut(s)	272, 1034, 1192
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	5 cut(s)	86, 232, 730, 823, 1096
TasI	AATT	5 cut(s)	31, 177, 799, 967, 990
TatI	WGTACW	3 cut(s)	126, 235, 649
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	3 cut(s)	165, 966, 1047
Tru9I	TTAA	3 cut(s)	165, 966, 1047
TseI	GCWGC	2 cut(s)	389, 398
TspDTI	ATGAA	7 cut(s)	69, 317, 329, 437, 438, 828, 956
TspGWI	ACGGA	2 cut(s)	951, 1155
Van91I	CCANNNNNTGG	1 cut(s)	1009
VpaK11BI	GGWCC	2 cut(s)	1087, 1123
XceI	RCATGY	2 cut(s)	355, 551
XcmI	CCANNNNNNNNNTGG	3 cut(s)	74, 363, 562
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	3 cut(s)	375, 527, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.