Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007569

Physical Location & Seq

Genomic Coordinates Forward (+)

63531527 .. 63533213

Gene Structure 1687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0503300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAATCAAGGTAATCTTTTTCTTGATACTTCTGAACAGGGAAAGGCCAAAAAGGTTGTTCCAACACAGCAACTGTGGTTTGAAGTTTTGAAATCCCAGATAGAAACGGGAACGTACTACGTACTCCCTACATGCTTTTTAAGAAAGAAAAGCAATCAGCAAAATCTCGGAAATGCTCAAACTTGTGTTCTGACTTCTGAGATAATCGAGTACACAAGTCCAACAGAAACTGCTATATGCAACCTGACATCAATTGCTCTAGCTACCCCGATTTGTCAGGGAGAAGGGTGTTCCTGTGGAGTTGCATCATCTATCCAAGCTTGTTGGAAGCAAAGGTTCCAAGAATCGATACAGAGGTCTGAGCTCTTATTGAAATCCCCAATGAAAGTGGTCACTGCAATTGTCACTGTAAACCTCAACAAAATAATTGATGTTAATTACTATCCTGTTGAGTGTGCAAAGACGTCTAATTTTAATTTACGACATGGGCCAATTGGGATTGGGGTTCAGGGTCTTGCTGATACCTTCATCTTGCATGGCATGTCCTTTGATTCACCCGAGGTAATTTCCATTTTAGGCTCAACAACTAAGCAAGGATTTTTTGGAGACCATTTACTACCATTCAGGGAGCAAGCTTCTTTTGAGTTAGCTGCAGAAGAAGGCCCATACGAAACATACAGCAGCTCTCCAGTTAGCAAGGGAATTCTTCAACCAGACATTGGGATGCAACACCTTCTGACTGATCGGACTGGGGTGCTCTTCGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

256

Amino Acids

28.08

Weight (kDa)

5.84

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_lgC	PF02867	12 - 239	3.1e-34	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38560
fragaria_vesca	FvH4_6g45530 FvH4_6g45530 FvH4_6g45530 FvH4_6g45530
malus_domestica	MD09G1081800.v1.1 MD09G1082000.v1.1 MD17G1072800.v1.1
prunus_persica	Prupe.3G241100_v2.0.a1 Prupe.3G241800_v2.0.a1
pyrus_communis	pycom09g00850 pycom17g07370
rosa_chinensis	RchiOBHm_Chr2g0163481
rosa_laevigata	RLG00000021405
rosa_multiflora	Rmu_ssc0000335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087280
rosa_rugosa	Rorug02G0503100 Rorug02G0503200 Rorug02G0503300
rosa_samantha	Rh2AG570100 Rh2BG582300 Rh2CG552100 Rh2DG592100
rosa_wichuraiana	Rw2G047200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	719
AcsI	RAATTY	1 cut(s)	702
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	3 cut(s)	116, 123, 212
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	83, 91, 373, 710
AluBI	AGCT	6 cut(s)	263, 320, 364, 635, 650, 684
AluI	AGCT	6 cut(s)	263, 320, 364, 635, 650, 684
Alw21I	GWGCWC	2 cut(s)	366, 759
Alw26I	GTCTC	1 cut(s)	600
AlwNI	CAGNNNCTG	2 cut(s)	73, 230
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	3 cut(s)	45, 488, 661
ApeKI	GCWGC	2 cut(s)	650, 681
ApoI	RAATTY	1 cut(s)	702
AspS9I	GGNCC	2 cut(s)	488, 662
AsuHPI	GGTGA	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	341, 374
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	2 cut(s)	366, 759
BbvI	GCAGC	2 cut(s)	637, 693
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	651
BisI	GCNGC	2 cut(s)	651, 682
BlsI	GCNGC	2 cut(s)	652, 683
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	488, 662
BmiI	GGNNCC	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	759
BmsI	GCATC	2 cut(s)	314, 714
BmuI	ACTGGG	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	2 cut(s)	689, 754
BseCI	ATCGAT	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	558
BseGI	GGATG	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	2 cut(s)	189, 351
BseNI	ACTGG	2 cut(s)	689, 754
BseXI	GCAGC	2 cut(s)	637, 693
BshFI	GGCC	3 cut(s)	47, 490, 663
BshVI	ATCGAT	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	366, 759
BsiHKCI	CYCGRG	1 cut(s)	557
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	1 cut(s)	600
BsnI	GGCC	3 cut(s)	47, 490, 663
Bso31I	GGTCTC	1 cut(s)	600
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	2 cut(s)	366, 759
Bsp143I	GATC	1 cut(s)	742
BspANI	GGCC	3 cut(s)	47, 490, 663
BspCNI	CTCAG	2 cut(s)	190, 352
BspDI	ATCGAT	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	655
BspQI	GCTCTTC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	689, 754
BssECI	CCNNGG	1 cut(s)	558
BssMI	GATC	1 cut(s)	742
BssNI	GRCGYC	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	75, 409
Bst6I	CTCTTC	1 cut(s)	764
BstACI	GRCGYC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	3 cut(s)	198, 360, 588
BstF5I	GGATG	1 cut(s)	729
BstKTI	GATC	1 cut(s)	745
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	1 cut(s)	742
BstNSI	RCATGY	2 cut(s)	135, 544
BstSFI	CTRYAG	1 cut(s)	651
BstSNI	TACGTA	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	637, 693
Bsu15I	ATCGAT	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	47, 490, 663
BsuTUI	ATCGAT	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	729
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 405
Cac8I	GCNNGC	1 cut(s)	633
CaiI	CAGNNNCTG	2 cut(s)	73, 230
Cfr13I	GGNCC	2 cut(s)	488, 662
ClaI	ATCGAT	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	115, 122, 211
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	4 cut(s)	132, 485, 536, 541
CviQI	GTAC	3 cut(s)	115, 122, 211
DdeI	CTNAG	3 cut(s)	198, 360, 588
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
Ecl136II	GAGCTC	1 cut(s)	364
Eco105I	TACGTA	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	702
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	4 cut(s)	135, 488, 539, 544
FaiI	YATR	8 cut(s)	133, 236, 238, 486, 537, 542, 667, 676
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	4 cut(s)	131, 484, 535, 540
Fnu4HI	GCNGC	2 cut(s)	651, 682
FokI	GGATG	1 cut(s)	736
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	651, 682
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	651, 682
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	3 cut(s)	47, 490, 663
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	4 cut(s)	135, 488, 539, 544
HindIII	AAGCTT	2 cut(s)	318, 633
HinfI	GANTC	3 cut(s)	4, 344, 551
HphI	GGTGA	1 cut(s)	546
Hpy166II	GTNNAC	2 cut(s)	213, 412
Hpy188I	TCNGA	8 cut(s)	34, 170, 192, 199, 361, 738, 747, 764
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	2 cut(s)	213, 412
HpyAV	CCTTC	4 cut(s)	278, 535, 653, 743
HpyCH4III	ACNGT	2 cut(s)	75, 409
HpyCH4IV	ACGT	3 cut(s)	113, 120, 464
HpyCH4V	TGCA	7 cut(s)	240, 305, 398, 458, 535, 653, 727
HpyF3I	CTNAG	3 cut(s)	198, 360, 588
HpySE526I	ACGT	3 cut(s)	113, 120, 464
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	4 cut(s)	135, 488, 539, 544
Kzo9I	GATC	1 cut(s)	742
LguI	GCTCTTC	1 cut(s)	764
LmnI	GCTCC	1 cut(s)	628
Lsp1109I	GCAGC	2 cut(s)	637, 693
LweI	GCATC	2 cut(s)	314, 714
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	3 cut(s)	113, 120, 464
MaeIII	GTNAC	2 cut(s)	391, 403
MalI	GATC	1 cut(s)	744
MboI	GATC	1 cut(s)	742
MboII	GAAGA	3 cut(s)	668, 698, 751
MfeI	CAATTG	3 cut(s)	252, 399, 492
MhlI	GDGCHC	2 cut(s)	366, 759
MluCI	AATT	9 cut(s)	252, 399, 426, 436, 469, 475, 492, 564, 702
MmeI	TCCRAC	3 cut(s)	86, 245, 305
MnlI	CCTC	3 cut(s)	348, 425, 553
MseI	TTAA	3 cut(s)	140, 435, 474
MslI	CAYNNNNRTG	1 cut(s)	722
MunI	CAATTG	3 cut(s)	252, 399, 492
NdeII	GATC	1 cut(s)	742
NlaIII	CATG	4 cut(s)	135, 488, 539, 544
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	391, 403
NspI	RCATGY	2 cut(s)	135, 544
PciSI	GCTCTTC	1 cut(s)	764
PfeI	GAWTC	3 cut(s)	4, 344, 551
PflMI	CCANNNNNTGG	1 cut(s)	719
PkrI	GCNGC	2 cut(s)	652, 683
Ppu21I	YACGTR	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	2 cut(s)	488, 662
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	2 cut(s)	73, 230
RsaI	GTAC	3 cut(s)	116, 123, 212
RsaNI	GTAC	3 cut(s)	115, 122, 211
RseI	CAYNNNNRTG	1 cut(s)	722
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	140, 435, 474
SatI	GCNGC	2 cut(s)	651, 682
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	2 cut(s)	488, 662
SduI	GDGCHC	2 cut(s)	366, 759
SfaNI	GCATC	2 cut(s)	314, 714
SfcI	CTRYAG	1 cut(s)	651
SmiMI	CAYNNNNRTG	1 cut(s)	722
SnaBI	TACGTA	1 cut(s)	121
Sse9I	AATT	9 cut(s)	252, 399, 426, 436, 469, 475, 492, 564, 702
SspMI	CTAG	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	75, 409
TaiI	ACGT	3 cut(s)	116, 123, 467
TaqI	TCGA	2 cut(s)	207, 347
TasI	AATT	9 cut(s)	252, 399, 426, 436, 469, 475, 492, 564, 702
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	4, 344, 551
Tru1I	TTAA	3 cut(s)	140, 435, 474
Tru9I	TTAA	3 cut(s)	140, 435, 474
TscAI	CASTG	2 cut(s)	400, 412
TseFI	GTSAC	2 cut(s)	391, 403
TseI	GCWGC	2 cut(s)	650, 681
Tsp45I	GTSAC	2 cut(s)	391, 403
TspDTI	ATGAA	3 cut(s)	17, 398, 517
TspRI	CASTG	2 cut(s)	400, 412
Van91I	CCANNNNNTGG	1 cut(s)	719
XapI	RAATTY	1 cut(s)	702
XceI	RCATGY	2 cut(s)	135, 544
XspI	CTAG	1 cut(s)	260
ZraI	GACGTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.