Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007569

Physical Location & Seq

Genomic Coordinates Forward (+)

5767808 .. 5768736

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1082000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTTAGAATGATTGAGGCGGCTTCAGCTTGTGTGCGTCATTCAGCTACGAAAAGGCCACGAATGAGACAGGTGGTAAGGGCTTTCGACTCCTTGGATGAATTCTCAGATCTCAGTAATGGAATGAAACCTGGCGAGAGCGAAATCTTTAATTCTGCAGAACACTCTGCACAAATTAGAATGTTTCAGAGGATGGCATTCGGCAGTGAAGACAACAGTACGAGTTTTTTCAATCAAAGTCAGAGCAGCTGGAAAAGTAGGGACTCCCGAGAGCAAGGGTACCAAAATCAGAGAAGCTGGGCGAGTAGAGACTCTAGGGAGCACGGGGATCAAACTCAGAGCAGCTGGAGTCGAGACCAGAGAGACCCGAGAAACCCCAGTACCGCGATGTCCATAGATAGATCTGGGATATGGAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

16.19

Weight (kDa)

9.09

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38560
fragaria_vesca	FvH4_6g45530 FvH4_6g45530 FvH4_6g45530 FvH4_6g45530
malus_domestica	MD09G1081800.v1.1 MD09G1082000.v1.1 MD17G1072800.v1.1
prunus_persica	Prupe.3G241100_v2.0.a1 Prupe.3G241800_v2.0.a1
pyrus_communis	pycom09g00850 pycom17g07370
rosa_chinensis	RchiOBHm_Chr2g0163481
rosa_laevigata	RLG00000021405
rosa_multiflora	Rmu_ssc0000335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087280
rosa_rugosa	Rorug02G0503100 Rorug02G0503200 Rorug02G0503300
rosa_samantha	Rh2AG570100 Rh2BG582300 Rh2CG552100 Rh2DG592100
rosa_wichuraiana	Rw2G047200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	279
AccII	CGCG	1 cut(s)	386
AciI	CCGC	2 cut(s)	20, 384
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	3 cut(s)	220, 281, 382
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	5 cut(s)	29, 47, 249, 297, 345
AluI	AGCT	5 cut(s)	29, 47, 249, 297, 345
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	4 cut(s)	61, 303, 348, 357
AlwI	GGATC	1 cut(s)	336
Ama87I	CYCGRG	2 cut(s)	267, 367
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	246, 342
ApoI	RAATTY	1 cut(s)	101
Asp718I	GGTACC	1 cut(s)	279
AvaI	CYCGRG	2 cut(s)	267, 367
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BanI	GGYRCC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	258, 354
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	4 cut(s)	61, 303, 348, 357
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	156
BglII	AGATCT	2 cut(s)	109, 401
BisI	GCNGC	3 cut(s)	21, 247, 343
BlsI	GCNGC	3 cut(s)	22, 248, 344
Bme1390I	CCNGG	1 cut(s)	132
BmeT110I	CYCGRG	2 cut(s)	267, 367
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	367
BsaI	GGTCTC	2 cut(s)	348, 357
BsaJI	CCNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	103, 198
BseMII	CTCAG	3 cut(s)	120, 127, 350
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	258, 354
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	2 cut(s)	267, 367
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	4 cut(s)	61, 303, 348, 357
BsmFI	GGGAC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	58
Bso31I	GGTCTC	2 cut(s)	348, 357
BsoBI	CYCGRG	2 cut(s)	267, 367
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	109, 328, 401
BspACI	CCGC	2 cut(s)	20, 384
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	3 cut(s)	119, 126, 349
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	279
BspTNI	GGTCTC	2 cut(s)	348, 357
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	3 cut(s)	109, 328, 401
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	106, 113, 336
BstF5I	GGATG	2 cut(s)	103, 198
BstFNI	CGCG	1 cut(s)	386
BstKTI	GATC	3 cut(s)	112, 331, 404
BstMAI	GTCTC	4 cut(s)	61, 303, 348, 357
BstMBI	GATC	3 cut(s)	109, 328, 401
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	258, 354
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	109, 401
BstYI	RGATCY	2 cut(s)	109, 401
BsuRI	GGCC	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	103, 198
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	219, 280, 381
CviJI	RGCY	8 cut(s)	23, 29, 47, 58, 83, 249, 297, 345
CviKI_1	RGCY	8 cut(s)	23, 29, 47, 58, 83, 249, 297, 345
CviQI	GTAC	3 cut(s)	219, 280, 381
DdeI	CTNAG	3 cut(s)	106, 113, 336
DpnI	GATC	3 cut(s)	111, 330, 403
DpnII	GATC	3 cut(s)	109, 328, 401
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	348, 357
Eco57I	CTGAAG	1 cut(s)	9
Eco88I	CYCGRG	2 cut(s)	267, 367
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaiI	YATR	2 cut(s)	395, 412
FaqI	GGGAC	1 cut(s)	275
Fnu4HI	GCNGC	3 cut(s)	21, 247, 343
FokI	GGATG	2 cut(s)	110, 205
Fsp4HI	GCNGC	3 cut(s)	21, 247, 343
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	21, 247, 343
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	58
HgaI	GACGC	1 cut(s)	26
HinfI	GANTC	4 cut(s)	89, 263, 311, 349
Hpy188I	TCNGA	5 cut(s)	109, 189, 243, 291, 339
Hpy188III	TCNNGA	2 cut(s)	267, 353
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	158, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	106, 113, 336
KpnI	GGTACC	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	109, 328, 401
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	9 cut(s)	56, 117, 144, 235, 283, 331, 371, 390, 391
Lsp1109I	GCAGC	2 cut(s)	258, 354
MaeI	CTAG	1 cut(s)	315
MalI	GATC	3 cut(s)	111, 330, 403
MboI	GATC	3 cut(s)	109, 328, 401
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	2 cut(s)	109, 401
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	3 cut(s)	101, 151, 174
MlyI	GAGTC	4 cut(s)	83, 257, 305, 358
MnlI	CCTC	2 cut(s)	10, 183
MseI	TTAA	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	249, 345
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	3 cut(s)	109, 328, 401
NlaIV	GGNNCC	1 cut(s)	281
PctI	GAATGC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	22, 248, 344
PleI	GAGTC	4 cut(s)	83, 257, 305, 357
PpsI	GAGTC	4 cut(s)	83, 257, 305, 357
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	109, 401
PvuII	CAGCTG	2 cut(s)	249, 345
RsaI	GTAC	3 cut(s)	220, 281, 382
RsaNI	GTAC	3 cut(s)	219, 280, 381
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	3 cut(s)	21, 247, 343
Sau3AI	GATC	3 cut(s)	109, 328, 401
SchI	GAGTC	4 cut(s)	83, 257, 305, 358
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	31, 49, 75, 133, 251, 299, 347
SfcI	CTRYAG	1 cut(s)	156
Sse9I	AATT	3 cut(s)	101, 151, 174
SsiI	CCGC	2 cut(s)	20, 384
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	87, 352
TasI	AATT	3 cut(s)	101, 151, 174
TauI	GCSGC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	246, 342
TspDTI	ATGAA	2 cut(s)	114, 140
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	101
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.