Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007569

Physical Location & Seq

Genomic Coordinates Forward (+)

63524943 .. 63527574

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0503200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTATCAAAGCGGGTTACTCACCTGCATGGTTTCAGCGATGGCCACACGTGCTCACCGTCACCCAATATAACTTGTCCACGTGTATGGCTTGAGAAATTGCCACACGTGCGGGGGCGTGTTGAGAATGTGAAAAATTTGACTCCCACATTGGAAAAATATAACTGGTTGCGCGGTGTTCTGGAAGAGCATAGTGCTCGTGATCTTTTTTGTGCTCTTTGGGTGCCTAATCTGTTTATGAAAAGAGATGAAAATAATGGCGATTGGTCATTATTTTGTCCTAATAGGTCTCCAGGTTTGGCAGATTGCTGGGGTGAAAAATTTGAACAGCTGTACACTCGTTATAAAAGAGAGGGAAAGGCCAAAAAGGATACTTGCAATAAGAAAAGCAATCAGCAAAATCTCGGAACCATAAAATGCTCAAACTTGTGTACTGAAATAATCGAGTATACAAGTCCAACAGAAACTGCTGTATGCAACCTGGCATCAATTACTCTACCACAATTTGTCAGGGAGAAGACGTCTAATTTACAACATAGGCCAATTCGGATAGGGATTCAGGGTCTTCCTGATACCTTCATCTTGGTTGGCATATCCTTTGACTCACCTGAGGCTCAACAACTGAACAAGGACATTTTCGAGACAATTTACTACCATGCCTTGAAAGCTTCTTCTGAGTTAGCTGCTAAAGAAGGTCCATATGAAACATACAATGGCTGTCCAGTTAGCAAGGGAATTCTTCAGCCAGACATGTGGAATGCTACACCTTCAGACCATTGGGATTGGGGTGCTTTTGGGGAAATGGTATCACACAATGGAATTAGAAATTCACTTCTTGTAGCCCCAATGCCTACTGCTTCGACTAGCCAAATCCTTGGAAACTTGAGCCATATACTTCCAATATCTACAGTTGCAGGTGGTGAATTTGTTGTGGTGAACAAACATCTTCTTCACGACTTAGCTAAGATGGGTCTTTGGTCTCCTGCAATTAAGAATAATATAATCTATGAGGATGGGTCTGTTCAGAAAATCCCACAAATCCCTGATGATCTGAAAGCCATGTACAAAACTTTTTGGGAGATCAAGCAAAGAACATTGCTTAACATGGCTGTTGATAGGGGAAGTTACATTACTGCACTTCTATGCTTGGAGACAGGTATGCACCAGTACCTTCTATTCGGATTTCAATGGCCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

399

Amino Acids

45.11

Weight (kDa)

7.58

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_lgC	PF02867	62 - 122	1.7e-14	Ribonucleotide reductase, barrel domain
Ribonuc_red_lgC	PF02867	123 - 172	1.6e-17	Ribonucleotide reductase, barrel domain
Ribonuc_red_lgC	PF02867	173 - 378	4.3e-57	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38560
fragaria_vesca	FvH4_6g45530 FvH4_6g45530 FvH4_6g45530 FvH4_6g45530
malus_domestica	MD09G1081800.v1.1 MD09G1082000.v1.1 MD17G1072800.v1.1
prunus_persica	Prupe.3G241100_v2.0.a1 Prupe.3G241800_v2.0.a1
pyrus_communis	pycom09g00850 pycom17g07370
rosa_chinensis	RchiOBHm_Chr2g0163481
rosa_laevigata	RLG00000021405
rosa_multiflora	Rmu_ssc0000335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087280
rosa_rugosa	Rorug02G0503100 Rorug02G0503200 Rorug02G0503300
rosa_samantha	Rh2AG570100 Rh2BG582300 Rh2CG552100 Rh2DG592100
rosa_wichuraiana	Rw2G047200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AarI	CACCTGC	2 cut(s)	33, 905
AatII	GACGTC	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	33, 905
AccB1I	GGYRCC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	449
AccII	CGCG	1 cut(s)	174
AciI	CCGC	3 cut(s)	13, 112, 174
AcoI	YGGCCR	2 cut(s)	43, 1190
AcsI	RAATTY	5 cut(s)	136, 320, 735, 826, 923
AcuI	CTGAAG	2 cut(s)	725, 753
AcvI	CACGTG	3 cut(s)	51, 83, 109
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	4 cut(s)	335, 433, 1064, 1169
AflIII	ACRYGT	4 cut(s)	48, 82, 106, 750
AgsI	TTSAA	3 cut(s)	326, 664, 1187
AjnI	CCWGG	2 cut(s)	292, 480
AluBI	AGCT	4 cut(s)	331, 668, 683, 962
AluI	AGCT	4 cut(s)	331, 668, 683, 962
Alw21I	GWGCWC	3 cut(s)	56, 199, 217
Alw26I	GTCTC	4 cut(s)	294, 635, 984, 1145
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	4 cut(s)	43, 360, 539, 1190
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	5 cut(s)	136, 320, 735, 826, 923
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	7 cut(s)	14, 48, 54, 326, 597, 932, 946
AvaII	GGWCC	1 cut(s)	695
AxyI	CCTNAGG	1 cut(s)	609
BalI	TGGCCA	2 cut(s)	45, 1192
BanI	GGYRCC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	1114, 1146
BauI	CACGAG	1 cut(s)	198
BbrPI	CACGTG	3 cut(s)	51, 83, 109
BbsI	GAAGAC	2 cut(s)	524, 557
Bbv12I	GWGCWC	3 cut(s)	56, 199, 217
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	3 cut(s)	35, 961, 1007
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	2 cut(s)	294, 482
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	4 cut(s)	294, 635, 984, 1145
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	1 cut(s)	906
BfuAI	ACCTGC	2 cut(s)	33, 905
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	294, 482
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	225, 409
BmrFI	CCNGG	2 cut(s)	294, 482
BmsI	GCATC	1 cut(s)	494
BpiI	GAAGAC	2 cut(s)	524, 557
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	2 cut(s)	113, 904
BsaAI	YACGTR	3 cut(s)	51, 83, 109
BsaHI	GRCGYC	1 cut(s)	521
BsaI	GGTCTC	2 cut(s)	294, 984
BsaJI	CCNNGG	1 cut(s)	874
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bse1I	ACTGG	3 cut(s)	170, 722, 1165
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	1094
BseBI	CCWGG	2 cut(s)	294, 482
BseDI	CCNNGG	1 cut(s)	874
BseGI	GGATG	1 cut(s)	1018
BseMI	GCAATG	1 cut(s)	1094
BseMII	CTCAG	2 cut(s)	600, 666
BseNI	ACTGG	3 cut(s)	170, 722, 1165
BseXI	GCAGC	1 cut(s)	670
BseYI	CCCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	1119
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	4 cut(s)	45, 362, 541, 1192
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	3 cut(s)	56, 199, 217
BsmAI	GTCTC	4 cut(s)	294, 635, 984, 1145
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	4 cut(s)	45, 362, 541, 1192
Bso31I	GGTCTC	2 cut(s)	294, 984
Bsp1286I	GDGCHC	3 cut(s)	56, 199, 217
Bsp1407I	TGTACA	2 cut(s)	333, 1062
Bsp143I	GATC	3 cut(s)	202, 1048, 1080
BspACI	CCGC	3 cut(s)	13, 112, 174
BspANI	GGCC	4 cut(s)	45, 362, 541, 1192
BspCNI	CTCAG	2 cut(s)	601, 667
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	225, 409
BspMI	ACCTGC	2 cut(s)	33, 905
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	2 cut(s)	294, 984
BsrDI	GCAATG	1 cut(s)	1094
BsrGI	TGTACA	2 cut(s)	333, 1062
BsrI	ACTGG	3 cut(s)	170, 722, 1165
BssECI	CCNNGG	1 cut(s)	874
BssMI	GATC	3 cut(s)	202, 1048, 1080
BssNAI	GTATAC	1 cut(s)	450
BssNI	GRCGYC	1 cut(s)	521
BssSI	CACGAG	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	874
Bst1107I	GTATAC	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	294, 482
Bst4CI	ACNGT	2 cut(s)	60, 910
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	521
BstAUI	TGTACA	2 cut(s)	333, 1062
BstBAI	YACGTR	3 cut(s)	51, 83, 109
BstDEI	CTNAG	4 cut(s)	609, 675, 958, 963
BstF5I	GGATG	1 cut(s)	1018
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	205, 1051, 1083
BstMAI	GTCTC	4 cut(s)	294, 635, 984, 1145
BstMBI	GATC	3 cut(s)	202, 1048, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 109, 665
BstNI	CCWGG	2 cut(s)	294, 482
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	292, 480
BstSFI	CTRYAG	1 cut(s)	906
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	670
BstV2I	GAAGAC	2 cut(s)	524, 557
BstXI	CCANNNNNNTGG	3 cut(s)	87, 753, 875
BstZ17I	GTATAC	1 cut(s)	450
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	4 cut(s)	45, 362, 541, 1192
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	1018
BveI	ACCTGC	2 cut(s)	33, 905
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	4 cut(s)	334, 432, 1063, 1168
CviAII	CATG	5 cut(s)	29, 656, 751, 1060, 1105
CviQI	GTAC	4 cut(s)	334, 432, 1063, 1168
DdeI	CTNAG	4 cut(s)	609, 675, 958, 963
DpnI	GATC	3 cut(s)	204, 1050, 1082
DpnII	GATC	3 cut(s)	202, 1048, 1080
EaeI	YGGCCR	2 cut(s)	43, 1190
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	874
Eco31I	GGTCTC	2 cut(s)	294, 984
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	725, 753
Eco72I	CACGTG	3 cut(s)	51, 83, 109
Eco81I	CCTNAGG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	735
EcoRII	CCWGG	2 cut(s)	292, 480
EcoT14I	CCWWGG	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	874
FaeI	CATG	5 cut(s)	32, 659, 754, 1063, 1108
FatI	CATG	5 cut(s)	28, 655, 750, 1059, 1104
FauI	CCCGC	2 cut(s)	6, 105
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	449
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	1 cut(s)	1025
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	684
GsaI	CCCAGC	1 cut(s)	313
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	4 cut(s)	45, 362, 541, 1192
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	5 cut(s)	32, 659, 754, 1063, 1108
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	3 cut(s)	142, 556, 602
HphI	GGTGA	7 cut(s)	14, 48, 54, 326, 597, 932, 946
Hpy166II	GTNNAC	5 cut(s)	80, 336, 432, 450, 937
Hpy188I	TCNGA	7 cut(s)	407, 549, 676, 772, 1026, 1053, 1181
Hpy188III	TCNNGA	5 cut(s)	182, 200, 569, 640, 953
Hpy8I	GTNNAC	5 cut(s)	80, 336, 432, 450, 937
HpyAV	CCTTC	4 cut(s)	586, 686, 777, 1181
HpyCH4III	ACNGT	2 cut(s)	60, 910
HpyCH4IV	ACGT	4 cut(s)	50, 82, 108, 521
HpyCH4V	TGCA	7 cut(s)	28, 378, 477, 914, 986, 1136, 1162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 109, 665
HpyF3I	CTNAG	4 cut(s)	609, 675, 958, 963
HpySE526I	ACGT	4 cut(s)	50, 82, 108, 521
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	5 cut(s)	32, 659, 754, 1063, 1108
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	202, 1048, 1080
LguI	GCTCTTC	1 cut(s)	180
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	4 cut(s)	50, 82, 108, 521
MaeIII	GTNAC	3 cut(s)	16, 60, 1124
MalI	GATC	3 cut(s)	204, 1050, 1082
MboI	GATC	3 cut(s)	202, 1048, 1080
MboII	GAAGA	7 cut(s)	197, 529, 557, 663, 731, 938, 941
MhlI	GDGCHC	3 cut(s)	56, 199, 217
MlsI	TGGCCA	2 cut(s)	45, 1192
MluNI	TGGCCA	2 cut(s)	45, 1192
MlyI	GAGTC	2 cut(s)	136, 596
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	3 cut(s)	346, 604, 1003
Mox20I	TGGCCA	2 cut(s)	45, 1192
MscI	TGGCCA	2 cut(s)	45, 1192
MseI	TTAA	2 cut(s)	990, 1101
MslI	CAYNNNNRTG	3 cut(s)	27, 85, 1141
Msp20I	TGGCCA	2 cut(s)	45, 1192
MspA1I	CMGCKG	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	294, 482
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	2 cut(s)	294, 482
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	51, 109, 665
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	202, 1048, 1080
NlaIII	CATG	5 cut(s)	32, 659, 754, 1063, 1108
NlaIV	GGNNCC	2 cut(s)	225, 409
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	754
PaqCI	CACCTGC	2 cut(s)	33, 905
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	763
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	2 cut(s)	136, 596
PmaCI	CACGTG	3 cut(s)	51, 83, 109
PmlI	CACGTG	3 cut(s)	51, 83, 109
PpsI	GAGTC	2 cut(s)	136, 596
Ppu21I	YACGTR	3 cut(s)	51, 83, 109
PscI	ACATGT	1 cut(s)	750
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	292, 480
PspCI	CACGTG	3 cut(s)	51, 83, 109
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	2 cut(s)	292, 480
PspN4I	GGNNCC	2 cut(s)	225, 409
PspPI	GGNCC	1 cut(s)	695
PstNI	CAGNNNCTG	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	4 cut(s)	335, 433, 1064, 1169
RsaNI	GTAC	4 cut(s)	334, 432, 1063, 1168
RseI	CAYNNNNRTG	3 cut(s)	27, 85, 1141
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	990, 1101
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	3 cut(s)	202, 1048, 1080
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	2 cut(s)	136, 596
ScrFI	CCNGG	2 cut(s)	294, 482
SduI	GDGCHC	3 cut(s)	56, 199, 217
SfaNI	GCATC	1 cut(s)	494
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	3 cut(s)	27, 85, 1141
SmlI	CTYRAG	2 cut(s)	92, 883
SmoI	CTYRAG	2 cut(s)	92, 883
SsiI	CCGC	3 cut(s)	13, 112, 174
SspMI	CTAG	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	292, 480
StyI	CCWWGG	1 cut(s)	874
TaaI	ACNGT	2 cut(s)	60, 910
TaiI	ACGT	4 cut(s)	53, 85, 111, 524
TaqI	TCGA	3 cut(s)	444, 639, 860
TatI	WGTACW	3 cut(s)	333, 431, 1062
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	2 cut(s)	990, 1101
Tru9I	TTAA	2 cut(s)	990, 1101
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	4 cut(s)	254, 264, 568, 717
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	5 cut(s)	136, 320, 735, 826, 923
XceI	RCATGY	1 cut(s)	754
XmiI	GTMKAC	1 cut(s)	449
XspI	CTAG	1 cut(s)	864
ZraI	GACGTC	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.