Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007569

Physical Location & Seq

Genomic Coordinates Reverse (-)

79840843 .. 79846901

Gene Structure 6059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG582300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGTCTTCAACAACCTCACCTTCTCCAAATTCTTCACCTTCTGCAAACCCACCAACCAGCTCTGATACCCCACCATCATCAAATTCCACAACTCCACAGTCCTCTCCTCCTCCTCCTCCAGCTGCCTCAGCTGCTCCCCCTCCAGCGTCATCACCGCCCCCACCGGTATCATCACCACCGCCTGCTGTAGCATCTCCACCACCAGCCTCACCACCCCCGGCGTCTCCACCTCCATCACCTCCTAAGTCTTCCCCTGCCCCTCCTCCAACGCCTCCTGCTCCACCCCCAGCATCACCGCCACCTCCAACACCAACTTCCCCTCCTCCGGCGGCACCAGCATCCAATGTATCCCCACCACCGCCACCATCAGGAGACTCCCCTCCTCCCAAAGCCTCCCCAACACCTCCATCAGAAGCCTCACCGCCACCTAAATCCCCTCCTCCTCCAGCTGATGCATCACCGCCTTCATCCACTTCTCCACCGCCACCAAAAGCACCAGAGAAGTCTCCTCCCTCCCCCACTGTTACACCACCTCCATCTGGTTCTCAGTCTGCTCCGCCACCAGCTGATAACACCCCTCCCAAGTCCACATCACCACCGCCTTCAGTTCCCTCATCGTCGTCTTCCCCTCCTGCTCCGCCCACTAATTCATCAGCTCCTGCTCCCTCAGGCTTGCCTGCTATTCCGACACAGAAACCAACTGCAAAGTCAACTAATGATGCCAATGTAACGGCAAATGCCACACCTGGAAACACAAAAGTTAACACTGGAGGAGCTGTGGCAATTGGAATTGTGGTTGGGGTGCTGGTGCTCAGTCTTGTTGTGATGGCCGTGTGGTTCACCAAGAAGAAGAAGAGAAAAAGTGGGTCGAATCTTTACACCATGCCTTCTCCCTTTGCTTCATCCCAGAATTCAGATTCCGTATTTTTGAGGCCCCATTCTCCAGCCCCCCTTGTAGGAAATGGTTCTGGTAAAGAATTCATGTATGCACAATCAGAGTCTGGAGCAAGCAATTCAAGATCATGGTTCACATATGAAGAACTGATCCAAGCCACAAATGGATTTTCAAAACAGAATCTTTTGGGTGAAGGGGGATTTGGTTGTGTGTACAAAGGTATCCTGGAAGATAGAAGAGAAGTTGCTGTTAAACAGCTAAAAATTGGTGGTGGACAAGGGGAACGTGAGTTCCGAGCTGAAGTTGAAATTATCAGTCGAGTACACCATCGCCATTTGGTTTCCCTGGTGGGTTACTGTATATCTGAGCATCAAAGGTTGCTTGTCTACGACTTTGTTCCAAACGATACCCTTCATTACCATCTTCATGGTCAGGATATGCCGATTATGGATTGGGCAACTAGAGTCAAAGTTGCTGCTGGTGCAGCTCGTGGGATAGCTTACTTACATGAAGATTGCCATCCTCGCATTATTCATAGAGATATCAAGTCATCAAACATACTTCTGGATAGCAATTTTGAAGCTCAGGTACGCCTGTTTCTGCAAATTTTATCAAGAAAACAAAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

508

Amino Acids

52.27

Weight (kDa)

9.28

Isoelectric Point (pI)

91.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	356 - 490	1.5e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	358 - 494	1.2e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38560
fragaria_vesca	FvH4_6g45530 FvH4_6g45530 FvH4_6g45530 FvH4_6g45530
malus_domestica	MD09G1081800.v1.1 MD09G1082000.v1.1 MD17G1072800.v1.1
prunus_persica	Prupe.3G241100_v2.0.a1 Prupe.3G241800_v2.0.a1
pyrus_communis	pycom09g00850 pycom17g07370
rosa_chinensis	RchiOBHm_Chr2g0163481
rosa_laevigata	RLG00000021405
rosa_multiflora	Rmu_ssc0000335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087280
rosa_rugosa	Rorug02G0503100 Rorug02G0503200 Rorug02G0503300
rosa_samantha	Rh2AG570100 Rh2BG582300 Rh2CG552100 Rh2DG592100
rosa_wichuraiana	Rw2G047200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	1281
AclWI	GGATC	1 cut(s)	1039
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	5 cut(s)	28, 82, 910, 977, 1500
AcuI	CTGAAG	2 cut(s)	588, 1215
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	3 cut(s)	1109, 1218, 1485
AfiI	CCNNNNNNNGG	4 cut(s)	325, 368, 539, 956
AgeI	ACCGGT	1 cut(s)	163
AgsI	TTSAA	5 cut(s)	9, 1017, 1068, 1202, 1475
AjnI	CCWGG	3 cut(s)	745, 1119, 1239
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 330, 1080, 1112
AloI	GAACNNNNNNTCC	4 cut(s)	1169, 1170, 1201, 1202
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	3 cut(s)	228, 366, 510
AlwI	GGATC	1 cut(s)	1039
AlwNI	CAGNNNCTG	2 cut(s)	659, 1001
AoxI	GGCC	2 cut(s)	828, 932
ApeKI	GCWGC	4 cut(s)	122, 131, 1370, 1379
ApoI	RAATTY	5 cut(s)	28, 82, 910, 977, 1500
AsiGI	ACCGGT	1 cut(s)	163
Asp700I	GAANNNNTTC	1 cut(s)	964
AspS9I	GGNCC	1 cut(s)	933
AsuC2I	CCSGG	1 cut(s)	218
AxyI	CCTNAGG	1 cut(s)	667
BaeI	ACNNNNGTAYC	4 cut(s)	1099, 1132, 1475, 1508
BanI	GGYRCC	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	1467, 1499
BauI	CACGAG	1 cut(s)	1383
BbsI	GAAGAC	2 cut(s)	240, 615
Bbv12I	GWGCWC	1 cut(s)	813
BbvCI	CCTCAGC	1 cut(s)	127
BbvI	GCAGC	4 cut(s)	109, 118, 1357, 1391
BccI	CCATC	9 cut(s)	82, 241, 373, 415, 544, 820, 1230, 1323, 1422
BceAI	ACGGC	2 cut(s)	747, 815
BciT130I	CCWGG	3 cut(s)	747, 1121, 1241
BciVI	GTATCC	2 cut(s)	358, 1127
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	3 cut(s)	228, 366, 510
BfaI	CTAG	1 cut(s)	1356
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	2 cut(s)	358, 1127
BisI	GCNGC	5 cut(s)	123, 132, 330, 1371, 1380
BlsI	GCNGC	5 cut(s)	124, 133, 331, 1372, 1381
Bme1390I	CCNGG	4 cut(s)	218, 747, 1121, 1241
BmgT120I	GGNCC	1 cut(s)	933
BmiI	GGNNCC	2 cut(s)	333, 935
BmrFI	CCNGG	4 cut(s)	218, 747, 1121, 1241
BmsI	GCATC	7 cut(s)	200, 299, 347, 442, 464, 709, 1273
BpiI	GAAGAC	2 cut(s)	240, 615
BpmI	CTGGAG	6 cut(s)	102, 126, 429, 789, 927, 1023
Bpu10I	CCTNAGC	2 cut(s)	127, 1479
BpuMI	CCSGG	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	1413
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	216, 1239
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	6 cut(s)	304, 334, 517, 547, 762, 792
Bsc4I	CCNNNNNNNGG	4 cut(s)	325, 368, 539, 956
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	772
Bse21I	CCTNAGG	1 cut(s)	667
Bse8I	GATNNNNATC	1 cut(s)	1413
BseBI	CCWGG	3 cut(s)	747, 1121, 1241
BseDI	CCNNGG	2 cut(s)	216, 1239
BseGI	GGATG	4 cut(s)	338, 467, 902, 1414
BseJI	GATNNNNATC	1 cut(s)	1413
BseLI	CCNNNNNNNGG	4 cut(s)	325, 368, 539, 956
BseMII	CTCAG	6 cut(s)	141, 560, 681, 826, 1251, 1493
BseNI	ACTGG	1 cut(s)	772
BseXI	GCAGC	4 cut(s)	109, 118, 1357, 1391
BseYI	CCCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	1398
BshFI	GGCC	2 cut(s)	830, 934
BshNI	GGYRCC	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	813
BsiSI	CCGG	3 cut(s)	164, 218, 326
BslI	CCNNNNNNNGG	4 cut(s)	325, 368, 539, 956
BsmAI	GTCTC	3 cut(s)	228, 366, 510
BsmBI	CGTCTC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	830, 934
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	2 cut(s)	1019, 1044
BspANI	GGCC	2 cut(s)	830, 934
BspCNI	CTCAG	6 cut(s)	140, 559, 680, 825, 1252, 1492
BspLI	GGNNCC	2 cut(s)	333, 935
BspPI	GGATC	1 cut(s)	1039
BspT107I	GGYRCC	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	1107
BsrI	ACTGG	1 cut(s)	772
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	216, 1239
BssMI	GATC	2 cut(s)	1019, 1044
BssNI	GRCGYC	1 cut(s)	221
BssSI	CACGAG	1 cut(s)	1383
Bst2BI	CACGAG	1 cut(s)	1383
Bst2UI	CCWGG	3 cut(s)	747, 1121, 1241
Bst4CI	ACNGT	3 cut(s)	99, 523, 1253
Bst6I	CTCTTC	2 cut(s)	848, 1126
BstACI	GRCGYC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	1107
BstC8I	GCNNGC	4 cut(s)	183, 674, 678, 1009
BstDEI	CTNAG	7 cut(s)	127, 243, 546, 667, 812, 1260, 1479
BstF5I	GGATG	4 cut(s)	338, 467, 902, 1414
BstKTI	GATC	2 cut(s)	1022, 1047
BstMAI	GTCTC	3 cut(s)	228, 366, 510
BstMBI	GATC	2 cut(s)	1019, 1044
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 131, 335, 1376, 1379, 1419
BstNI	CCWGG	3 cut(s)	747, 1121, 1241
BstSCI	CCNGG	4 cut(s)	216, 745, 1119, 1239
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	4 cut(s)	109, 118, 1357, 1391
BstV2I	GAAGAC	2 cut(s)	240, 615
BstXI	CCANNNNNNTGG	1 cut(s)	1322
Bsu36I	CCTNAGG	1 cut(s)	667
BsuI	GTATCC	2 cut(s)	358, 1127
BsuRI	GGCC	2 cut(s)	830, 934
BtgZI	GCGATG	1 cut(s)	1208
BtsCI	GGATG	4 cut(s)	338, 467, 902, 1414
BtsIMutI	CAGTG	2 cut(s)	519, 765
Cac8I	GCNNGC	4 cut(s)	183, 674, 678, 1009
CaiI	CAGNNNCTG	2 cut(s)	659, 1001
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	933
CseI	GACGC	2 cut(s)	135, 210
Csp6I	GTAC	3 cut(s)	1108, 1217, 1484
CspAI	ACCGGT	1 cut(s)	163
CviAII	CATG	5 cut(s)	883, 982, 1023, 1322, 1403
CviQI	GTAC	3 cut(s)	1108, 1217, 1484
DdeI	CTNAG	7 cut(s)	127, 243, 546, 667, 812, 1260, 1479
DpnI	GATC	2 cut(s)	1021, 1046
DpnII	GATC	2 cut(s)	1019, 1044
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	2 cut(s)	848, 1126
EarI	CTCTTC	2 cut(s)	848, 1126
EciI	GGCGGA	2 cut(s)	546, 627
Eco32I	GATATC	1 cut(s)	1438
Eco57I	CTGAAG	2 cut(s)	588, 1215
Eco81I	CCTNAGG	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	933
EcoRI	GAATTC	2 cut(s)	910, 977
EcoRII	CCWGG	3 cut(s)	745, 1119, 1239
EcoRV	GATATC	1 cut(s)	1438
EcoT22I	ATGCAT	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	5 cut(s)	886, 985, 1026, 1325, 1406
FatI	CATG	5 cut(s)	882, 981, 1022, 1321, 1402
FauNDI	CATATG	1 cut(s)	1033
FblI	GTMKAC	1 cut(s)	1281
Fnu4HI	GCNGC	5 cut(s)	123, 132, 330, 1371, 1380
FokI	GGATG	4 cut(s)	325, 454, 889, 1401
Fsp4HI	GCNGC	5 cut(s)	123, 132, 330, 1371, 1380
FspBI	CTAG	1 cut(s)	1356
GluI	GCNGC	5 cut(s)	123, 132, 330, 1371, 1380
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	6 cut(s)	102, 126, 429, 789, 927, 1023
HaeIII	GGCC	2 cut(s)	830, 934
HapII	CCGG	3 cut(s)	164, 218, 326
HgaI	GACGC	2 cut(s)	135, 210
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	5 cut(s)	886, 985, 1026, 1325, 1406
HincII	GTYRAC	2 cut(s)	711, 763
HindII	GTYRAC	2 cut(s)	711, 763
HinfI	GANTC	6 cut(s)	374, 871, 917, 998, 1075, 1359
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	3 cut(s)	164, 218, 326
Hpy166II	GTNNAC	9 cut(s)	588, 711, 763, 840, 1029, 1108, 1169, 1219, 1282
Hpy188I	TCNGA	7 cut(s)	64, 412, 687, 916, 997, 1190, 1261
Hpy188III	TCNNGA	6 cut(s)	369, 1002, 1017, 1328, 1460, 1509
Hpy8I	GTNNAC	9 cut(s)	588, 711, 763, 840, 1029, 1108, 1169, 1219, 1282
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	7 cut(s)	30, 48, 474, 612, 897, 1082, 1316
HpyCH4III	ACNGT	3 cut(s)	99, 523, 1253
HpyCH4IV	ACGT	1 cut(s)	1180
HpyCH4V	TGCA	6 cut(s)	44, 455, 704, 989, 1379, 1498
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 131, 335, 1376, 1379, 1419
HpyF3I	CTNAG	7 cut(s)	127, 243, 546, 667, 812, 1260, 1479
HpySE526I	ACGT	1 cut(s)	1180
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	5 cut(s)	886, 985, 1026, 1325, 1406
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	1019, 1044
LmnI	GCTCC	8 cut(s)	139, 283, 559, 640, 661, 667, 773, 1004
Lsp1109I	GCAGC	4 cut(s)	109, 118, 1357, 1391
LweI	GCATC	7 cut(s)	200, 299, 347, 442, 464, 709, 1273
MaeI	CTAG	1 cut(s)	1356
MaeII	ACGT	1 cut(s)	1180
MaeIII	GTNAC	3 cut(s)	523, 727, 1247
MalI	GATC	2 cut(s)	1021, 1046
MboI	GATC	2 cut(s)	1019, 1044
MfeI	CAATTG	1 cut(s)	783
MhlI	GDGCHC	1 cut(s)	813
MlyI	GAGTC	3 cut(s)	368, 1007, 1368
MmeI	TCCRAC	3 cut(s)	290, 329, 710
Mph1103I	ATGCAT	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	964
MseI	TTAA	2 cut(s)	762, 1146
MslI	CAYNNNNRTG	1 cut(s)	1320
MspA1I	CMGCKG	4 cut(s)	122, 131, 449, 566
MspI	CCGG	3 cut(s)	164, 218, 326
MspR9I	CCNGG	4 cut(s)	218, 747, 1121, 1241
MunI	CAATTG	1 cut(s)	783
MvaI	CCWGG	3 cut(s)	747, 1121, 1241
MwoI	GCNNNNNNNGC	6 cut(s)	128, 131, 335, 1376, 1379, 1419
NciI	CCSGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	1033
NdeII	GATC	2 cut(s)	1019, 1044
NlaIII	CATG	5 cut(s)	886, 985, 1026, 1325, 1406
NlaIV	GGNNCC	2 cut(s)	333, 935
NsiI	ATGCAT	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	1186
PdmI	GAANNNNTTC	1 cut(s)	964
PfeI	GAWTC	3 cut(s)	871, 917, 1075
PfoI	TCCNGGA	1 cut(s)	1119
PinAI	ACCGGT	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	124, 133, 331, 1372, 1381
PleI	GAGTC	3 cut(s)	368, 1006, 1367
PpsI	GAGTC	3 cut(s)	368, 1006, 1367
Psp6I	CCWGG	3 cut(s)	745, 1119, 1239
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	3 cut(s)	745, 1119, 1239
PspN4I	GGNNCC	2 cut(s)	333, 935
PspPI	GGNCC	1 cut(s)	933
PstNI	CAGNNNCTG	2 cut(s)	659, 1001
PvuII	CAGCTG	4 cut(s)	122, 131, 449, 566
RsaI	GTAC	3 cut(s)	1109, 1218, 1485
RsaNI	GTAC	3 cut(s)	1108, 1217, 1484
RseI	CAYNNNNRTG	1 cut(s)	1320
SaqAI	TTAA	2 cut(s)	762, 1146
SatI	GCNGC	5 cut(s)	123, 132, 330, 1371, 1380
Sau3AI	GATC	2 cut(s)	1019, 1044
Sau96I	GGNCC	1 cut(s)	933
SchI	GAGTC	3 cut(s)	368, 1007, 1368
ScrFI	CCNGG	4 cut(s)	218, 747, 1121, 1241
SduI	GDGCHC	1 cut(s)	813
SfaNI	GCATC	7 cut(s)	200, 299, 347, 442, 464, 709, 1273
SfcI	CTRYAG	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	1320
SspMI	CTAG	1 cut(s)	1356
StyD4I	CCNGG	4 cut(s)	216, 745, 1119, 1239
TaaI	ACNGT	3 cut(s)	99, 523, 1253
TaiI	ACGT	1 cut(s)	1183
TaqI	TCGA	2 cut(s)	869, 1213
TatI	WGTACW	2 cut(s)	1107, 1216
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	3 cut(s)	871, 917, 1075
Tru1I	TTAA	2 cut(s)	762, 1146
Tru9I	TTAA	2 cut(s)	762, 1146
TscAI	CASTG	2 cut(s)	526, 772
TseI	GCWGC	4 cut(s)	122, 131, 1370, 1379
TspDTI	ATGAA	9 cut(s)	456, 639, 891, 970, 1050, 1298, 1310, 1418, 1419
TspGWI	ACGGA	1 cut(s)	910
TspRI	CASTG	2 cut(s)	526, 772
XapI	RAATTY	5 cut(s)	28, 82, 910, 977, 1500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1055
XmiI	GTMKAC	1 cut(s)	1281
XmnI	GAANNNNTTC	1 cut(s)	964
XspI	CTAG	1 cut(s)	1356
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.