Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000335.1

Orthogroup ID

OG0007569

Physical Location & Seq

Genomic Coordinates Forward (+)

9690 .. 11592

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000335.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgtatgcacaatcagagtctggagcaagcaattcaagatcatggttcacatatgaagaactgatccaagccacaaatggattttcaaaacagaatcttttgggtgaagggggatttggttgtgtgtacaaaggtatcctggaagatggaagagaagttgctgttaaacagctaaaaattggtggtggacaaggggaacgtgagttccgagctgaagttgaaattatcagtcgagtacaccatcgccatttggtttccctggtgggttactgtatatctgagcatcaaaggttgcttgtctacgactttgttccaaacgatacccttcattaccatcttcatggtcaggatatgccgattatggattgggcaactagagtcaaagttgctgctggtgcagctcgtgggatagcttacttacatgaagattgccatcctcgcattattcatagagatatcaagtcatcaaacatacttctggatagcaattttgaagctcaggttgcagatttcgggcttgcaaagctagcattggatacaaatacacatgtaaccacacgagtcatgggaacatttggatacatggctccagaatatgcaacaagtggaaagttgacagataagtctgatgtttattcttatggcgttgtacttttggagctgattactggtcgcaagcctgtggatggctctcagccattgggtgatgagagccttgttgaatgggtaaattcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

245

Amino Acids

27.2

Weight (kDa)

5.75

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38560
fragaria_vesca	FvH4_6g45530 FvH4_6g45530 FvH4_6g45530 FvH4_6g45530
malus_domestica	MD09G1081800.v1.1 MD09G1082000.v1.1 MD17G1072800.v1.1
prunus_persica	Prupe.3G241100_v2.0.a1 Prupe.3G241800_v2.0.a1
pyrus_communis	pycom09g00850 pycom17g07370
rosa_chinensis	RchiOBHm_Chr2g0163481
rosa_laevigata	RLG00000021405
rosa_multiflora	Rmu_ssc0000335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087280
rosa_rugosa	Rorug02G0503100 Rorug02G0503200 Rorug02G0503300
rosa_samantha	Rh2AG570100 Rh2BG582300 Rh2CG552100 Rh2DG592100
rosa_wichuraiana	Rw2G047200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	622
AccI	GTMKAC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	730
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	3 cut(s)	128, 237, 651
AfiI	CCNNNNNNNGG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	5 cut(s)	36, 87, 221, 494, 722
AjnI	CCWGG	2 cut(s)	138, 258
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AloI	GAACNNNNNNTCC	4 cut(s)	188, 189, 220, 221
AluBI	AGCT	7 cut(s)	172, 212, 401, 413, 497, 526, 661
AluI	AGCT	7 cut(s)	172, 212, 401, 413, 497, 526, 661
AlwI	GGATC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	389, 398
ApoI	RAATTY	1 cut(s)	730
AsuHPI	GGTGA	2 cut(s)	116, 716
AsuNHI	GCTAGC	1 cut(s)	526
BaeI	ACNNNNGTAYC	2 cut(s)	118, 151
BauI	CACGAG	2 cut(s)	402, 558
BbvI	GCAGC	2 cut(s)	376, 410
BccI	CCATC	5 cut(s)	140, 249, 342, 441, 680
BciT130I	CCWGG	2 cut(s)	140, 260
BciVI	GTATCC	3 cut(s)	146, 529, 572
BfaI	CTAG	2 cut(s)	375, 527
BfuI	GTATCC	3 cut(s)	146, 529, 572
BisI	GCNGC	2 cut(s)	390, 399
BlsI	GCNGC	2 cut(s)	391, 400
Bme1390I	CCNGG	2 cut(s)	140, 260
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	2 cut(s)	140, 260
BmsI	GCATC	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	42, 573
Bpu10I	CCTNAGC	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse1I	ACTGG	1 cut(s)	673
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	140, 260
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	433, 691
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMII	CTCAG	3 cut(s)	270, 512, 707
BseNI	ACTGG	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	376, 410
BsgI	GTGCAG	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	686
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	38, 63
BspCNI	CTCAG	3 cut(s)	271, 511, 706
BspLI	GGNNCC	1 cut(s)	588
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	38, 63
BssSI	CACGAG	2 cut(s)	402, 558
Bst2BI	CACGAG	2 cut(s)	402, 558
Bst2UI	CCWGG	2 cut(s)	140, 260
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	4 cut(s)	28, 519, 528, 677
BstDEI	CTNAG	3 cut(s)	279, 498, 693
BstF5I	GGATG	2 cut(s)	433, 691
BstKTI	GATC	2 cut(s)	41, 66
BstMBI	GATC	2 cut(s)	38, 63
BstMWI	GCNNNNNNNGC	6 cut(s)	395, 398, 438, 503, 523, 527
BstNI	CCWGG	2 cut(s)	140, 260
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	2 cut(s)	138, 258
BstV1I	GCAGC	2 cut(s)	376, 410
BstXI	CCANNNNNNTGG	1 cut(s)	341
BsuI	GTATCC	3 cut(s)	146, 529, 572
BtgZI	GCGATG	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	433, 691
Cac8I	GCNNGC	4 cut(s)	28, 519, 528, 677
CaiI	CAGNNNCTG	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	127, 236, 650
CviAII	CATG	6 cut(s)	42, 341, 422, 548, 565, 583
CviQI	GTAC	3 cut(s)	127, 236, 650
DdeI	CTNAG	3 cut(s)	279, 498, 693
DpnI	GATC	2 cut(s)	40, 65
DpnII	GATC	2 cut(s)	38, 63
DrdI	GACNNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco32I	GATATC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	138, 258
EcoRV	GATATC	1 cut(s)	457
FaeI	CATG	6 cut(s)	45, 344, 425, 551, 568, 586
FatI	CATG	6 cut(s)	41, 340, 421, 547, 564, 582
FauNDI	CATATG	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	390, 399
FokI	GGATG	2 cut(s)	420, 698
Fsp4HI	GCNGC	2 cut(s)	390, 399
FspBI	CTAG	2 cut(s)	375, 527
GluI	GCNGC	2 cut(s)	390, 399
GsuI	CTGGAG	2 cut(s)	42, 573
Hin1II	CATG	6 cut(s)	45, 344, 425, 551, 568, 586
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	4 cut(s)	17, 94, 378, 561
HphI	GGTGA	2 cut(s)	116, 716
Hpy166II	GTNNAC	6 cut(s)	48, 127, 188, 238, 301, 615
Hpy188I	TCNGA	4 cut(s)	16, 209, 280, 628
Hpy188III	TCNNGA	5 cut(s)	21, 36, 347, 479, 590
Hpy8I	GTNNAC	6 cut(s)	48, 127, 188, 238, 301, 615
HpyAV	CCTTC	2 cut(s)	101, 335
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	5 cut(s)	8, 398, 506, 521, 599
HpyF10VI	GCNNNNNNNGC	6 cut(s)	395, 398, 438, 503, 523, 527
HpyF3I	CTNAG	3 cut(s)	279, 498, 693
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	6 cut(s)	45, 344, 425, 551, 568, 586
Kzo9I	GATC	2 cut(s)	38, 63
LmnI	GCTCC	3 cut(s)	23, 592, 658
Lsp1109I	GCAGC	2 cut(s)	376, 410
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	375, 527
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	2 cut(s)	266, 550
MalI	GATC	2 cut(s)	40, 65
MboI	GATC	2 cut(s)	38, 63
MboII	GAAGA	5 cut(s)	68, 155, 162, 329, 437
MluCI	AATT	5 cut(s)	31, 177, 222, 487, 730
MlyI	GAGTC	3 cut(s)	26, 387, 570
MnlI	CCTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	140, 260
MvaI	CCWGG	2 cut(s)	140, 260
MwoI	GCNNNNNNNGC	6 cut(s)	395, 398, 438, 503, 523, 527
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	2 cut(s)	38, 63
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	6 cut(s)	45, 344, 425, 551, 568, 586
NlaIV	GGNNCC	1 cut(s)	588
NspI	RCATGY	1 cut(s)	551
PciI	ACATGT	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	391, 400
PleI	GAGTC	3 cut(s)	25, 386, 569
PpsI	GAGTC	3 cut(s)	25, 386, 569
PscI	ACATGT	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	138, 258
PspGI	CCWGG	2 cut(s)	138, 258
PspN4I	GGNNCC	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	20
RsaI	GTAC	3 cut(s)	128, 237, 651
RsaNI	GTAC	3 cut(s)	127, 236, 650
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	390, 399
Sau3AI	GATC	2 cut(s)	38, 63
SchI	GAGTC	3 cut(s)	26, 387, 570
ScrFI	CCNGG	2 cut(s)	140, 260
SfaNI	GCATC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	5 cut(s)	31, 177, 222, 487, 730
SspMI	CTAG	2 cut(s)	375, 527
StyD4I	CCNGG	2 cut(s)	138, 258
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	232
TasI	AATT	5 cut(s)	31, 177, 222, 487, 730
TatI	WGTACW	3 cut(s)	126, 235, 649
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	2 cut(s)	389, 398
TspDTI	ATGAA	6 cut(s)	69, 317, 329, 437, 438, 723
XapI	RAATTY	1 cut(s)	730
XceI	RCATGY	1 cut(s)	551
XcmI	CCANNNNNNNNNTGG	2 cut(s)	74, 562
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	2 cut(s)	375, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.