Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Reverse (-)

11711595 .. 11713442

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1148800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGACTATGTTCTGTTTGTGAAGGGTTCGGGCCCGCACGCCATTGATTATGGCTGTGCTGCAGATGGGAAGCCTCCGAAAGAGGTTCTTGTGAGCCGGAAATGTGCCGAGGCAGTTCTTCGAGATGCCCAGGTGTATGTTCCTGGTGTACTGGGTTGCACTGCTCATGTCGAGAAAGGGGATATTGTGGCGGTTTCAGTTGCGGTTGAGCAGCCCGATGCTGATGGTGGATGGGTCGTTGGGATCACCCGAGGGACTGTGCTGCAAGGTTCAGAGACAGATCCTCAAATCGGTGAATGCATATTAGACATGTGTGCTGCACCAGGAGGGAAAACAACTGCTATTGCACTTCTTATGAAGGATGAAGGAGAAATTGTTGCCGCTGCTAGATCTCACAACAAAGTGCAGGGTATTCACAAATTAGCTGCTGAAATGGGCCTGAGATGTATAACACCATATAAACCAGACGCTCCAAAAATCTGTTTGTATAACAAACGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

168

Amino Acids

17.61

Weight (kDa)

6.07

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	94 - 158	4.1e-13	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	35, 191, 203, 381
AclWI	GGATC	2 cut(s)	251, 275
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	309
AjnI	CCWGG	3 cut(s)	129, 142, 322
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	2 cut(s)	251, 275
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	2 cut(s)	31, 436
ApaI	GGGCCC	1 cut(s)	35
ApeKI	GCWGC	6 cut(s)	59, 211, 262, 317, 383, 425
AspS9I	GGNCC	3 cut(s)	31, 32, 436
AsuHPI	GGTGA	2 cut(s)	238, 305
AvaI	CYCGRG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	35
BbvI	GCAGC	6 cut(s)	46, 223, 249, 304, 370, 412
BccI	CCATC	3 cut(s)	59, 218, 225
BciT130I	CCWGG	3 cut(s)	131, 144, 324
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	60
BglII	AGATCT	1 cut(s)	389
BisI	GCNGC	7 cut(s)	60, 212, 263, 318, 381, 384, 426
BlsI	GCNGC	7 cut(s)	61, 213, 264, 319, 382, 385, 427
Bme1390I	CCNGG	3 cut(s)	131, 144, 324
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	3 cut(s)	31, 32, 436
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	3 cut(s)	131, 144, 324
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	115, 208
BmuI	ACTGGG	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	108, 129, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	3 cut(s)	131, 144, 324
BseDI	CCNNGG	3 cut(s)	108, 129, 250
BseGI	GGATG	2 cut(s)	236, 367
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	6 cut(s)	46, 223, 249, 304, 370, 412
BsgI	GTGCAG	2 cut(s)	303, 425
BshFI	GGCC	2 cut(s)	33, 438
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	33, 438
BsoBI	CYCGRG	1 cut(s)	249
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	243, 280, 389
BspACI	CCGC	4 cut(s)	35, 191, 203, 381
BspANI	GGCC	2 cut(s)	33, 438
BspCNI	CTCAG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	2 cut(s)	251, 275
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	3 cut(s)	108, 129, 250
BssMI	GATC	3 cut(s)	243, 280, 389
Bst2UI	CCWGG	3 cut(s)	131, 144, 324
Bst4CI	ACNGT	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	35, 39
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	236, 367
BstKTI	GATC	3 cut(s)	246, 283, 392
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	243, 280, 389
BstNI	CCWGG	3 cut(s)	131, 144, 324
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	3 cut(s)	129, 142, 322
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	6 cut(s)	46, 223, 249, 304, 370, 412
BstX2I	RGATCY	2 cut(s)	280, 389
BstYI	RGATCY	2 cut(s)	280, 389
BsuRI	GGCC	2 cut(s)	33, 438
BtsCI	GGATG	2 cut(s)	236, 367
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	35, 39
Cfr13I	GGNCC	3 cut(s)	31, 32, 436
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	2 cut(s)	167, 310
CviJI	RGCY	7 cut(s)	33, 54, 73, 96, 214, 425, 438
CviKI_1	RGCY	7 cut(s)	33, 54, 73, 96, 214, 425, 438
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	3 cut(s)	245, 282, 391
DpnII	GATC	3 cut(s)	243, 280, 389
Eco24I	GRGCYC	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	249
EcoRII	CCWGG	3 cut(s)	129, 142, 322
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	170, 313
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	166, 309
FauI	CCCGC	1 cut(s)	42
Fnu4HI	GCNGC	7 cut(s)	60, 212, 263, 318, 381, 384, 426
FokI	GGATG	2 cut(s)	243, 374
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	7 cut(s)	60, 212, 263, 318, 381, 384, 426
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	7 cut(s)	60, 212, 263, 318, 381, 384, 426
HaeIII	GGCC	2 cut(s)	33, 438
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	2 cut(s)	170, 313
HinfI	GANTC	1 cut(s)	498
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	2 cut(s)	238, 305
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	3 cut(s)	78, 274, 503
Hpy188III	TCNNGA	2 cut(s)	122, 172
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	16, 352, 359
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	7 cut(s)	62, 159, 265, 300, 320, 347, 406
HpyF3I	CTNAG	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	170, 313
Kzo9I	GATC	3 cut(s)	243, 280, 389
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	6 cut(s)	46, 223, 249, 304, 370, 412
LweI	GCATC	2 cut(s)	115, 208
MaeI	CTAG	1 cut(s)	387
MalI	GATC	3 cut(s)	245, 282, 391
MboI	GATC	3 cut(s)	243, 280, 389
MboII	GAAGA	1 cut(s)	110
MflI	RGATCY	2 cut(s)	280, 389
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	2 cut(s)	372, 419
MnlI	CCTC	6 cut(s)	76, 84, 103, 245, 294, 320
Mph1103I	ATGCAT	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	3 cut(s)	131, 144, 324
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	3 cut(s)	131, 144, 324
NdeII	GATC	3 cut(s)	243, 280, 389
NlaIII	CATG	2 cut(s)	170, 313
NlaIV	GGNNCC	1 cut(s)	33
NmeAIII	GCCGAG	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	302
NspI	RCATGY	1 cut(s)	313
PciI	ACATGT	1 cut(s)	309
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	498
PkrI	GCNGC	7 cut(s)	61, 213, 264, 319, 382, 385, 427
PscI	ACATGT	1 cut(s)	309
Psp6I	CCWGG	3 cut(s)	129, 142, 322
PspGI	CCWGG	3 cut(s)	129, 142, 322
PspN4I	GGNNCC	1 cut(s)	33
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	3 cut(s)	31, 32, 436
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	280, 389
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SatI	GCNGC	7 cut(s)	60, 212, 263, 318, 381, 384, 426
Sau3AI	GATC	3 cut(s)	243, 280, 389
Sau96I	GGNCC	3 cut(s)	31, 32, 436
ScrFI	CCNGG	3 cut(s)	131, 144, 324
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	4 cut(s)	87, 135, 271, 427
SfaNI	GCATC	2 cut(s)	115, 208
SfcI	CTRYAG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	372, 419
SsiI	CCGC	4 cut(s)	35, 191, 203, 381
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	129, 142, 322
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	2 cut(s)	121, 171
TasI	AATT	2 cut(s)	372, 419
TatI	WGTACW	1 cut(s)	148
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	1 cut(s)	498
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	6 cut(s)	59, 211, 262, 317, 383, 425
TspDTI	ATGAA	2 cut(s)	371, 378
TspRI	CASTG	1 cut(s)	166
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.