Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372479.1

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 938

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372479.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 566 bp

gtttggagtacttggtgtttgtgaagggctcaggtcctcactcagttgattacgggtgtgatgaggatgggaatgtgaagcatcctcctaaggaggtgcttgtgagccggaaatgtgccgaggcggttcttcgtggcgccgaggtgtatgttcctggtgtactggcttgcagtgctcatgttgagaagggggatgaggttgcggtttcggtgtcggttgagcagcccggtgctgagggtggatgggtggttgggatcactagagggactattctgcaaggtgctgagacagatccttatcattttgaaaggagtgggctgtatattggccgaggtaaagcaatgatgtcaaggtctgggatttttcgtgctcctgaaggaattgctgtggatttcagtgacagagtatatgatctgccttcgtttcgtggcgtgcttgagggggaaatatttcttcaaaatctgccaagcattgtcactgctcatgctctaggtacctattacagtattttggttattgaatcagcttacacatgttattgcttcataatcatcattgagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

187

Amino Acids

20.27

Weight (kDa)

4.99

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	493
AccB1I	GGYRCC	2 cut(s)	136, 493
AciI	CCGC	2 cut(s)	124, 202
AclWI	GGATC	2 cut(s)	262, 286
AcoI	YGGCCR	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	3 cut(s)	10, 161, 495
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	3 cut(s)	307, 457, 520
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	526
AluI	AGCT	1 cut(s)	526
Alw21I	GWGCWC	2 cut(s)	177, 372
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	262, 286
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	449
Asp718I	GGTACC	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	34
AxyI	CCTNAGG	1 cut(s)	89
BanI	GGYRCC	2 cut(s)	136, 493
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	2 cut(s)	177, 372
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	61, 236
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	2 cut(s)	260, 490
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	155, 227
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	138, 495
BmrFI	CCNGG	2 cut(s)	155, 227
BmsI	GCATC	1 cut(s)	90
Bpu10I	CCTNAGC	2 cut(s)	30, 233
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	119, 140, 330
Bse1I	ACTGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	3 cut(s)	119, 140, 330
BseGI	GGATG	4 cut(s)	72, 81, 198, 247
BseJI	GATNNNNATC	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	4 cut(s)	44, 56, 224, 275
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	2 cut(s)	136, 493
BsiHKAI	GWGCWC	2 cut(s)	177, 372
BsiSI	CCGG	2 cut(s)	108, 227
BslFI	GGGAC	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	3 cut(s)	31, 177, 372
Bsp143I	GATC	3 cut(s)	254, 291, 411
BspACI	CCGC	2 cut(s)	124, 202
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	4 cut(s)	43, 55, 225, 276
BspLI	GGNNCC	2 cut(s)	138, 495
BspPI	GGATC	2 cut(s)	262, 286
BspT107I	GGYRCC	2 cut(s)	136, 493
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	119, 140, 330
BssMI	GATC	3 cut(s)	254, 291, 411
BssNI	GRCGYC	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	505
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	168, 433
BstDEI	CTNAG	5 cut(s)	30, 42, 89, 233, 284
BstF5I	GGATG	4 cut(s)	72, 81, 198, 247
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	3 cut(s)	257, 294, 414
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	3 cut(s)	254, 291, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	153, 225
BstV1I	GCAGC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	4 cut(s)	72, 81, 198, 247
BtsI	GCAGTG	2 cut(s)	177, 476
BtsIMutI	CAGTG	3 cut(s)	177, 402, 476
Cac8I	GCNNGC	2 cut(s)	168, 433
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	9, 160, 494
CviAII	CATG	3 cut(s)	178, 484, 533
CviJI	RGCY	7 cut(s)	29, 107, 166, 225, 318, 329, 526
CviKI_1	RGCY	7 cut(s)	29, 107, 166, 225, 318, 329, 526
CviQI	GTAC	3 cut(s)	9, 160, 494
DdeI	CTNAG	5 cut(s)	30, 42, 89, 233, 284
DinI	GGCGCC	1 cut(s)	138
DpnI	GATC	3 cut(s)	256, 293, 413
DpnII	GATC	3 cut(s)	254, 291, 411
EaeI	YGGCCR	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	31
EgeI	GGCGCC	1 cut(s)	138
EheI	GGCGCC	1 cut(s)	138
FaeI	CATG	3 cut(s)	181, 487, 536
FaiI	YATR	8 cut(s)	149, 179, 323, 408, 410, 485, 534, 547
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	3 cut(s)	177, 483, 532
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	4 cut(s)	68, 79, 205, 254
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	2 cut(s)	260, 490
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	2 cut(s)	108, 227
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	181, 487, 536
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	520
HpaII	CCGG	2 cut(s)	108, 227
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	4 cut(s)	18, 180, 370, 428
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	2 cut(s)	170, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	5 cut(s)	30, 42, 89, 233, 284
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	181, 487, 536
HspAI	GCGC	1 cut(s)	137
KasI	GGCGCC	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	497
Kzo9I	GATC	3 cut(s)	254, 291, 411
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	8 cut(s)	17, 121, 140, 148, 167, 240, 341, 386
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	260, 490
MaeIII	GTNAC	2 cut(s)	397, 474
MalI	GATC	3 cut(s)	256, 293, 413
MboI	GATC	3 cut(s)	254, 291, 411
MboII	GAAGA	2 cut(s)	121, 445
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	3 cut(s)	31, 177, 372
MluCI	AATT	1 cut(s)	380
Mly113I	GGCGCC	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	449
MspI	CCGG	2 cut(s)	108, 227
MspR9I	CCNGG	2 cut(s)	155, 227
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	254, 291, 411
NlaIII	CATG	3 cut(s)	181, 487, 536
NlaIV	GGNNCC	2 cut(s)	138, 495
NmeAIII	GCCGAG	3 cut(s)	144, 165, 355
NmuCI	GTSAC	2 cut(s)	397, 474
NspI	RCATGY	1 cut(s)	536
PciI	ACATGT	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	520
PkrI	GCNGC	1 cut(s)	224
PluTI	GGCGCC	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	34
PscI	ACATGT	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	138, 495
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	3 cut(s)	10, 161, 495
RsaNI	GTAC	3 cut(s)	9, 160, 494
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	3 cut(s)	254, 291, 411
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	155, 227
SduI	GDGCHC	3 cut(s)	31, 177, 372
SfaNI	GCATC	1 cut(s)	90
SfoI	GGCGCC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	2 cut(s)	124, 202
SspDI	GGCGCC	1 cut(s)	136
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	2 cut(s)	260, 490
StyD4I	CCNGG	2 cut(s)	153, 225
TaaI	ACNGT	1 cut(s)	505
TasI	AATT	1 cut(s)	380
TatI	WGTACW	2 cut(s)	8, 159
TfiI	GAWTC	1 cut(s)	520
TscAI	CASTG	3 cut(s)	177, 402, 483
TseFI	GTSAC	2 cut(s)	397, 474
TseI	GCWGC	1 cut(s)	222
Tsp45I	GTSAC	2 cut(s)	397, 474
TspDTI	ATGAA	1 cut(s)	534
TspRI	CASTG	3 cut(s)	177, 402, 483
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	260, 490
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.