Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Reverse (-)

5062122 .. 5063984

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAGAAGAAAGCTAGCAACTTGCTCAGAACCATCACCACCTTCAACCCCAAGCACCGCAAAATCATGGACGATTTACCAGAGCGCTACTCTTACAACCCAACTCTCCGCTGGAACGCCGACCTCGAAAGTTACTTCTCCAACGCCTACGGACCCCACCATTTCTCCCGCATCTCCGATGCACTAACGCGGCCGTCTTGCTACTCCTGCATACGCGTGAACACGCTGAAGTCGACGCCGGATGCGGCCATTGAGAAGCTGAGGACGGTTCTGAAAGAAAAAGGAGCTGACATTTCCAAGTGTGAAGTGGGAGGGATGGACTATGTTCTGTTTGTGAAGGGTTCGGGCCCGCAGGCCATTGATTATAGCTGTGCTGCAGATGGGAAGCCTCCGAAAGAGGTTCTTGTGAGCCGGAAATGTGCCGAGGCAGTTCTTCGAGGTGCCCAGGTGTATGTTCCTGGTGTACTGGGTTGCACTGCTCGTGTCGAGAAAGGGGATATTGTGGCGGTTTCAGTTGCGGTTCAGCAGCCCGGTGCTGATGGTGGATGGGTCGTTGGGATCACCCGAGGGACTGTGCCGCAAGGTTCAGAGACAGATCCTTATCATCTTGAACGAGGTGGGCTGTATATCGGCAAAGGAAGAGCAACGCTGTCAAGGGCCGGGATTTTCTGTGTTATGGAAGGGCTTGCTGTGGATATGAGTGTCAGAGTTTTTAATCTTCCTTCTTTACATGATGTGCTTGAGGAAGAAATATTTCTTCAAAATCTGCCAATCATTATTGTTGCTCATGCACTAGATCCTCAAAAAGGTGAACGCATATTAGACTTGTGTCTGCACCAGGAGGGAAAACAACTGCAATTGCACTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

291

Amino Acids

31.84

Weight (kDa)

8.35

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	233
AccII	CGCG	2 cut(s)	190, 216
AciI	CCGC	9 cut(s)	58, 109, 169, 190, 245, 350, 506, 518, 578
AclWI	GGATC	3 cut(s)	566, 590, 791
AcoI	YGGCCR	2 cut(s)	191, 246
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	465
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	46, 611, 761
AjnI	CCWGG	3 cut(s)	444, 457, 837
AluBI	AGCT	4 cut(s)	14, 259, 287, 369
AluI	AGCT	4 cut(s)	14, 259, 287, 369
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	3 cut(s)	566, 590, 791
Ama87I	CYCGRG	1 cut(s)	564
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	5 cut(s)	191, 246, 346, 354, 657
ApaI	GGGCCC	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	374, 526
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	4 cut(s)	152, 346, 347, 657
AsuC2I	CCSGG	2 cut(s)	531, 661
AsuHPI	GGTGA	3 cut(s)	28, 553, 821
AsuNHI	GCTAGC	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	2 cut(s)	350, 445
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	350
BauI	CACGAG	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	361, 538
BccI	CCATC	5 cut(s)	41, 310, 374, 533, 540
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	3 cut(s)	446, 459, 839
BcnI	CCSGG	2 cut(s)	531, 661
BcoDI	GTCTC	1 cut(s)	584
BfaI	CTAG	2 cut(s)	15, 794
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	5 cut(s)	191, 246, 375, 527, 578
BlsI	GCNGC	5 cut(s)	192, 247, 376, 528, 579
Bme1390I	CCNGG	5 cut(s)	446, 459, 531, 661, 839
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	564
BmgT120I	GGNCC	4 cut(s)	152, 346, 347, 657
BmiI	GGNNCC	3 cut(s)	154, 348, 442
BmrFI	CCNGG	5 cut(s)	446, 459, 531, 661, 839
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	3 cut(s)	169, 180, 232
BmtI	GCTAGC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	476
BoxI	GACNNNNGTC	1 cut(s)	828
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	2 cut(s)	531, 661
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	423, 444, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse1I	ACTGG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	3 cut(s)	446, 459, 839
BseDI	CCNNGG	3 cut(s)	423, 444, 565
BseGI	GGATG	3 cut(s)	247, 321, 551
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	40, 251
BseNI	ACTGG	1 cut(s)	471
BseSI	GKGCMC	2 cut(s)	350, 445
BseX3I	CGGCCG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	361, 538
BsgI	GTGCAG	1 cut(s)	818
Bsh1236I	CGCG	2 cut(s)	190, 216
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	5 cut(s)	193, 248, 348, 356, 659
BshNI	GGYRCC	1 cut(s)	440
BsiEI	CGRYCG	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	564
BsiSI	CCGG	4 cut(s)	239, 412, 531, 660
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	5 cut(s)	193, 248, 348, 356, 659
BsoBI	CYCGRG	1 cut(s)	564
Bsp120I	GGGCCC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	350, 445
Bsp143I	GATC	3 cut(s)	558, 595, 796
BspACI	CCGC	9 cut(s)	58, 109, 169, 190, 245, 350, 506, 518, 578
BspANI	GGCC	5 cut(s)	193, 248, 348, 356, 659
BspCNI	CTCAG	2 cut(s)	39, 252
BspFNI	CGCG	2 cut(s)	190, 216
BspLI	GGNNCC	3 cut(s)	154, 348, 442
BspMAI	CTGCAG	1 cut(s)	379
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	3 cut(s)	566, 590, 791
BspQI	GCTCTTC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	423, 444, 565
BssMI	GATC	3 cut(s)	558, 595, 796
BssNI	GRCGYC	1 cut(s)	236
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	3 cut(s)	446, 459, 839
Bst4CI	ACNGT	2 cut(s)	268, 574
Bst6I	CTCTTC	1 cut(s)	634
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	4 cut(s)	16, 350, 354, 687
BstDEI	CTNAG	2 cut(s)	26, 260
BstENI	CCTNNNNNAGG	1 cut(s)	804
BstF5I	GGATG	3 cut(s)	247, 321, 551
BstFNI	CGCG	2 cut(s)	190, 216
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	3 cut(s)	561, 598, 799
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	3 cut(s)	558, 595, 796
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	3 cut(s)	446, 459, 839
BstPAI	GACNNNNGTC	1 cut(s)	828
BstSCI	CCNGG	5 cut(s)	444, 457, 529, 659, 837
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	2 cut(s)	350, 445
BstUI	CGCG	2 cut(s)	190, 216
BstV1I	GCAGC	2 cut(s)	361, 538
BstX2I	RGATCY	2 cut(s)	595, 796
BstYI	RGATCY	2 cut(s)	595, 796
BstZI	CGGCCG	1 cut(s)	191
BsuRI	GGCC	5 cut(s)	193, 248, 348, 356, 659
BtsCI	GGATG	3 cut(s)	247, 321, 551
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	4 cut(s)	16, 350, 354, 687
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	4 cut(s)	152, 346, 347, 657
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	3 cut(s)	67, 731, 788
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	2 cut(s)	26, 260
DpnI	GATC	3 cut(s)	560, 597, 798
DpnII	GATC	3 cut(s)	558, 595, 796
EaeI	YGGCCR	2 cut(s)	191, 246
EagI	CGGCCG	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	634
EclXI	CGGCCG	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	86
Eco52I	CGGCCG	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	564
EcoNI	CCTNNNNNAGG	1 cut(s)	804
EcoRII	CCWGG	3 cut(s)	444, 457, 837
EcoT38I	GRGCYC	1 cut(s)	350
FaeI	CATG	3 cut(s)	70, 734, 791
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	3 cut(s)	66, 730, 787
FauI	CCCGC	2 cut(s)	176, 357
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	5 cut(s)	191, 246, 375, 527, 578
FokI	GGATG	3 cut(s)	254, 328, 558
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	191, 246, 375, 527, 578
FspBI	CTAG	2 cut(s)	15, 794
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	5 cut(s)	191, 246, 375, 527, 578
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	5 cut(s)	193, 248, 348, 356, 659
HapII	CCGG	4 cut(s)	239, 412, 531, 660
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	70, 734, 791
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HpaII	CCGG	4 cut(s)	239, 412, 531, 660
HphI	GGTGA	3 cut(s)	28, 553, 821
Hpy166II	GTNNAC	4 cut(s)	220, 234, 464, 812
Hpy188I	TCNGA	6 cut(s)	29, 178, 273, 393, 589, 707
Hpy188III	TCNNGA	2 cut(s)	487, 608
Hpy8I	GTNNAC	4 cut(s)	220, 234, 464, 812
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	4 cut(s)	52, 331, 674, 732
HpyCH4III	ACNGT	2 cut(s)	268, 574
HpyCH4V	TGCA	8 cut(s)	182, 210, 377, 474, 791, 835, 856, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	26, 260
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	70, 734, 791
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	558, 595, 796
LguI	GCTCTTC	1 cut(s)	634
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	2 cut(s)	361, 538
LweI	GCATC	3 cut(s)	169, 180, 232
MaeI	CTAG	2 cut(s)	15, 794
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	560, 597, 798
MboI	GATC	3 cut(s)	558, 595, 796
MboII	GAAGA	7 cut(s)	16, 19, 425, 651, 710, 749, 758
MfeI	CAATTG	1 cut(s)	857
MflI	RGATCY	2 cut(s)	595, 796
MhlI	GDGCHC	2 cut(s)	350, 445
MluCI	AATT	1 cut(s)	857
MluI	ACGCGT	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	4 cut(s)	239, 412, 531, 660
MspR9I	CCNGG	5 cut(s)	446, 459, 531, 661, 839
MunI	CAATTG	1 cut(s)	857
MvaI	CCWGG	3 cut(s)	446, 459, 839
MvnI	CGCG	2 cut(s)	190, 216
MwoI	GCNNNNNNNGC	1 cut(s)	207
NciI	CCSGG	2 cut(s)	531, 661
NdeII	GATC	3 cut(s)	558, 595, 796
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	70, 734, 791
NlaIV	GGNNCC	3 cut(s)	154, 348, 442
NmeAIII	GCCGAG	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 230
PdmI	GAANNNNTTC	1 cut(s)	753
PkrI	GCNGC	5 cut(s)	192, 247, 376, 528, 579
PshAI	GACNNNNGTC	1 cut(s)	828
Psp6I	CCWGG	3 cut(s)	444, 457, 837
PspGI	CCWGG	3 cut(s)	444, 457, 837
PspN4I	GGNNCC	3 cut(s)	154, 348, 442
PspOMI	GGGCCC	1 cut(s)	346
PspPI	GGNCC	4 cut(s)	152, 346, 347, 657
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	595, 796
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	5 cut(s)	191, 246, 375, 527, 578
Sau3AI	GATC	3 cut(s)	558, 595, 796
Sau96I	GGNCC	4 cut(s)	152, 346, 347, 657
ScrFI	CCNGG	5 cut(s)	446, 459, 531, 661, 839
SduI	GDGCHC	2 cut(s)	350, 445
SfaNI	GCATC	3 cut(s)	169, 180, 232
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	1 cut(s)	857
SsiI	CCGC	9 cut(s)	58, 109, 169, 190, 245, 350, 506, 518, 578
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	2 cut(s)	15, 794
StyD4I	CCNGG	5 cut(s)	444, 457, 529, 659, 837
TaaI	ACNGT	2 cut(s)	268, 574
TaqI	TCGA	4 cut(s)	126, 233, 436, 486
TasI	AATT	1 cut(s)	857
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	3 cut(s)	193, 248, 580
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	2 cut(s)	374, 526
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	152
XagI	CCTNNNNNAGG	1 cut(s)	804
XcmI	CCANNNNNNNNNTGG	2 cut(s)	108, 304
XmiI	GTMKAC	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	2 cut(s)	15, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.